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Bekris F, Vasileiadis S, Papadopoulou E, Samaras A, Testempasis S, Gkizi D, Tavlaki G, Tzima A, Paplomatas E, Markakis E, Karaoglanidis G, Papadopoulou KK, Karpouzas DG. Correction to: Grapevine wood microbiome analysis identifies key fungal pathogens and potential interactions with the bacterial community implicated in grapevine trunk disease appearance. Environ Microbiome 2022; 17:11. [PMID: 35255987 PMCID: PMC8903652 DOI: 10.1186/s40793-022-00405-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Affiliation(s)
- Fotios Bekris
- Laboratory of Plant and Environmental Biotechnology, Viopolis, Department of Biochemistry and Biotechnology, University of Thessaly, 41500 Larissa, Greece
| | - Sotirios Vasileiadis
- Laboratory of Plant and Environmental Biotechnology, Viopolis, Department of Biochemistry and Biotechnology, University of Thessaly, 41500 Larissa, Greece
| | - Elena Papadopoulou
- Laboratory of Plant and Environmental Biotechnology, Viopolis, Department of Biochemistry and Biotechnology, University of Thessaly, 41500 Larissa, Greece
| | - Anastasios Samaras
- Plant Pathology Laboratory, Faculty of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Stefanos Testempasis
- Plant Pathology Laboratory, Faculty of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Danae Gkizi
- Laboratory of Plant Pathology, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece
| | - Georgia Tavlaki
- Laboratory of Mycology, Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Subtropical Crops and Viticulture, Hellenic Agricultural Organization DIMITRA, 32A Kastorias Street, Mesa Katsabas, 71307 Heraklion, Crete Greece
| | - Aliki Tzima
- Laboratory of Plant Pathology, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece
| | - Epaminondas Paplomatas
- Laboratory of Plant Pathology, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece
| | - Emmanuel Markakis
- Laboratory of Mycology, Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Subtropical Crops and Viticulture, Hellenic Agricultural Organization DIMITRA, 32A Kastorias Street, Mesa Katsabas, 71307 Heraklion, Crete Greece
| | - George Karaoglanidis
- Plant Pathology Laboratory, Faculty of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Kalliope K. Papadopoulou
- Laboratory of Plant and Environmental Biotechnology, Viopolis, Department of Biochemistry and Biotechnology, University of Thessaly, 41500 Larissa, Greece
| | - Dimitrios G. Karpouzas
- Laboratory of Plant and Environmental Biotechnology, Viopolis, Department of Biochemistry and Biotechnology, University of Thessaly, 41500 Larissa, Greece
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Omirou M, Rousidou C, Bekris F, Papadopoulou KK, Menkissoglou-Spiroudi U, Ehaliotis C, Karpouzas DG. The impact of biofumigation and chemical fumigation methods on the structure and function of the soil microbial community. Microb Ecol 2011; 61:201-13. [PMID: 20811742 DOI: 10.1007/s00248-010-9740-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2010] [Accepted: 08/11/2010] [Indexed: 05/14/2023]
Abstract
Biofumigation (BIOF) is carried out mainly by the incorporation of brassica plant parts into the soil, and this fumigation activity has been linked to their high glucosinolate (GSL) content. GSLs are hydrolyzed by the endogenous enzyme myrosinase to release isothiocyanates (ITCs). A microcosm study was conducted to investigate the effects induced on the soil microbial community by the incorporation of broccoli residues into soil either with (BM) or without (B) added myrosinase and of chemical fumigation, either as soil application of 2-phenylethyl ITC (PITC) or metham sodium (MS). Soil microbial activity was evaluated by measuring fluorescein diacetate hydrolysis and soil respiration. Effects on the structure of the total microbial community were assessed by phospholipid fatty acid analysis, while the impact on important fungal (ascomycetes (ASC)) and bacterial (ammonia-oxidizing bacteria (AOB)) guilds was evaluated by denaturating gradient gel electrophoresis (DGGE). Overall, B, and to a lesser extent BM, stimulated microbial activity and biomass. The diminished effect of BM compared to B was particularly evident in fungi and Gram-negative bacteria and was attributed to rapid ITC release following the myrosinase treatment. PITC did not have a significant effect, whereas an inhibitory effect was observed in the MS-treated soil. DGGE analysis showed that the ASC community was temporarily altered by BIOF treatments and more persistently by the MS treatment, while the structure of the AOB community was not affected by the treatments. Cloning of the ASC community showed that MS application had a deleterious effect on potential plant pathogens like Fusarium, Nectria, and Cladosporium compared to BIOF treatments which did not appear to inhibit them. Our findings indicate that BIOF induces changes on the structure and function of the soil microbial community that are mostly related to microbial substrate availability changes derived from the soil amendment with fresh organic materials.
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Affiliation(s)
- Michalis Omirou
- Department of Natural Resources and Agricultural Engineering, Laboratory of Soils and Agricultural Chemistry, Agricultural University of Athens, 75 Iera Odos Str, 11855, Athens, Greece
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Karpouzas DG, Rousidou C, Papadopoulou KK, Bekris F, Zervakis GI, Singh BK, Ehaliotis C. Effect of continuous olive mill wastewater applications, in the presence and absence of nitrogen fertilization, on the structure of rhizosphere-soil fungal communities. FEMS Microbiol Ecol 2009; 70:388-401. [DOI: 10.1111/j.1574-6941.2009.00779.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
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