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Gao KT, Xie E, Chen V, Iriondo C, Calivà F, Souza RB, Majumdar S, Pedoia V. Large-Scale Analysis of Meniscus Morphology as Risk Factor for Knee Osteoarthritis. Arthritis Rheumatol 2023; 75:1958-1968. [PMID: 37262347 DOI: 10.1002/art.42623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Revised: 03/24/2023] [Accepted: 05/25/2023] [Indexed: 06/03/2023]
Abstract
OBJECTIVE Although it is established that structural damage of the meniscus is linked to knee osteoarthritis (OA) progression, the predisposition to future development of OA because of geometric meniscal shapes is plausible and unexplored. This study aims to identify common variations in meniscal shape and determine their relationships to tissue morphology, OA onset, and longitudinal changes in cartilage thickness. METHODS A total of 4,790 participants from the Osteoarthritis Initiative data set were studied. A statistical shape model was developed for the meniscus, and shape scores were evaluated between a control group and an OA incidence group. Shape features were then associated with cartilage thickness changes over 8 years to localize the relationship between meniscus shape and cartilage degeneration. RESULTS Seven shape features between the medial and lateral menisci were identified to be different between knees that remain normal and those that develop OA. These include length-width ratios, horn lengths, root attachment angles, and concavity. These "at-risk" shapes were linked to unique cartilage thickness changes that suggest a relationship between meniscus geometry and decreased tibial coverage and rotational imbalances. Additionally, strong associations were found between meniscal shape and demographic subpopulations, future tibial extrusion, and meniscal and ligamentous tears. CONCLUSION This automatic method expanded upon known meniscus characteristics that are associated with the onset of OA and discovered novel shape features that have yet to be investigated in the context of OA risk.
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Affiliation(s)
- Kenneth T Gao
- University of California, San Francisco and University of California Berkeley-University of California San Francisco Graduate Program in Bioengineering, San Francisco, United States
| | - Emily Xie
- Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, United States
| | - Vincent Chen
- Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, United States
| | - Claudia Iriondo
- University of California, San Francisco and University of California Berkeley-University of California San Francisco Graduate Program in Bioengineering, San Francisco, United States
| | - Francesco Calivà
- Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, United States
| | - Richard B Souza
- Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco and Department of Physical Therapy and Rehabilitation Science, University of California, San Francisco, United States
| | - Sharmila Majumdar
- Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, United States
| | - Valentina Pedoia
- Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, United States
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Tolpadi AA, Han M, Calivà F, Pedoia V, Majumdar S. Region of interest-specific loss functions improve T 2 quantification with ultrafast T 2 mapping MRI sequences in knee, hip and lumbar spine. Sci Rep 2022; 12:22208. [PMID: 36564430 PMCID: PMC9789075 DOI: 10.1038/s41598-022-26266-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022] Open
Abstract
MRI T2 mapping sequences quantitatively assess tissue health and depict early degenerative changes in musculoskeletal (MSK) tissues like cartilage and intervertebral discs (IVDs) but require long acquisition times. In MSK imaging, small features in cartilage and IVDs are crucial for diagnoses and must be preserved when reconstructing accelerated data. To these ends, we propose region of interest-specific postprocessing of accelerated acquisitions: a recurrent UNet deep learning architecture that provides T2 maps in knee cartilage, hip cartilage, and lumbar spine IVDs from accelerated T2-prepared snapshot gradient-echo acquisitions, optimizing for cartilage and IVD performance with a multi-component loss function that most heavily penalizes errors in those regions. Quantification errors in knee and hip cartilage were under 10% and 9% from acceleration factors R = 2 through 10, respectively, with bias for both under 3 ms for most of R = 2 through 12. In IVDs, mean quantification errors were under 12% from R = 2 through 6. A Gray Level Co-Occurrence Matrix-based scheme showed knee and hip pipelines outperformed state-of-the-art models, retaining smooth textures for most R and sharper ones through moderate R. Our methodology yields robust T2 maps while offering new approaches for optimizing and evaluating reconstruction algorithms to facilitate better preservation of small, clinically relevant features.
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Affiliation(s)
- Aniket A Tolpadi
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA.
| | - Misung Han
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
| | - Francesco Calivà
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
| | - Valentina Pedoia
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
| | - Sharmila Majumdar
- Department of Radiology and Biomedical Imaging, University of California, 1700, 4th Street, San Francisco, CA, 94158, USA
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Calivà F, Namiri NK, Dubreuil M, Pedoia V, Ozhinsky E, Majumdar S. Studying osteoarthritis with artificial intelligence applied to magnetic resonance imaging. Nat Rev Rheumatol 2022; 18:112-121. [PMID: 34848883 DOI: 10.1038/s41584-021-00719-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/03/2021] [Indexed: 02/08/2023]
Abstract
The 3D nature and soft-tissue contrast of MRI makes it an invaluable tool for osteoarthritis research, by facilitating the elucidation of disease pathogenesis and progression. The recent increasing employment of MRI has certainly been stimulated by major advances that are due to considerable investment in research, particularly related to artificial intelligence (AI). These AI-related advances are revolutionizing the use of MRI in clinical research by augmenting activities ranging from image acquisition to post-processing. Automation is key to reducing the long acquisition times of MRI, conducting large-scale longitudinal studies and quantitatively defining morphometric and other important clinical features of both soft and hard tissues in various anatomical joints. Deep learning methods have been used recently for multiple applications in the musculoskeletal field to improve understanding of osteoarthritis. Compared with labour-intensive human efforts, AI-based methods have advantages and potential in all stages of imaging, as well as post-processing steps, including aiding diagnosis and prognosis. However, AI-based methods also have limitations, including the arguably limited interpretability of AI models. Given that the AI community is highly invested in uncovering uncertainties associated with model predictions and improving their interpretability, we envision future clinical translation and progressive increase in the use of AI algorithms to support clinicians in optimizing patient care.
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Affiliation(s)
- Francesco Calivà
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Nikan K Namiri
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Maureen Dubreuil
- Section of Rheumatology, Department of Medicine, Boston University School of Medicine, Boston, MA, USA
| | - Valentina Pedoia
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Eugene Ozhinsky
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA
| | - Sharmila Majumdar
- Department of Radiology and Biomedical Imaging and Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, USA.
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Iriondo C, Liu F, Calivà F, Kamat S, Majumdar S, Pedoia V. Towards understanding mechanistic subgroups of osteoarthritis: 8-year cartilage thickness trajectory analysis. J Orthop Res 2021; 39:1305-1317. [PMID: 32897602 DOI: 10.1002/jor.24849] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Revised: 07/23/2020] [Accepted: 09/02/2020] [Indexed: 02/04/2023]
Abstract
Many studies have validated cartilage thickness as a biomarker for knee osteoarthritis (OA); however, few studies investigate beyond cross-sectional observations or comparisons across two timepoints. By characterizing the trajectory of cartilage thickness changes over 8 years in healthy individuals from the OA initiative data set, this study discovers associations between the dynamics of cartilage changes and OA incidence. A fully automated cartilage segmentation and thickness measurement method were developed and validated against manual measurements: mean absolute error = 0.11-0.14 mm (n = 4129 knees) and automatic reproducibility = 0.04-0.07 mm (n = 316 knees). The mean thickness for the medial and lateral tibia (MT, LT), central weight-bearing medial and lateral femur (cMF, cLF), and patella (P) cartilage compartments were quantified for 1453 knees at seven timepoints. Trajectory subgroups were defined per cartilage compartment such as stable, thinning to thickening, accelerated thickening, plateaued thickening, thickening to thinning, accelerated thinning, or plateaued thinning. For tibiofemoral compartments, the stable (22%-36%) and plateaued thinning (22%-37%) trajectories were the most common, with an average initial velocity (μm/month), acceleration (μm/month2 ) for the plateaued thinning trajectories LT: -2.66, 0.0326; MT: -2.49, 0.0365; cMF: -3.51, 0.0509; and cLF: -2.68, 0.041. In the patella compartment, the plateaued thinning (35%) and thickening to thinning (24%) trajectories were the most common, with an average initial velocity, acceleration for each -4.17, 0.0424; 1.95, -0.0835. Knees with nonstable trajectories had higher adjusted odds of OA incidence than stable trajectories: accelerated thickening, accelerated thinning, and plateaued thinning trajectories of the MT had adjusted odds ratio (OR) of 18.9, 5.48, and 1.47, respectively; in the cMF, adjusted OR of 8.55, 10.1, and 2.61, respectively.
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Affiliation(s)
- Claudia Iriondo
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California, USA.,Department of Bioengineering, University of California, San Francisco and University of California, Berkeley Joint Graduate Group in Bioengineering, San Francisco, California, USA
| | - Felix Liu
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California, USA
| | - Francesco Calivà
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California, USA
| | - Sarthak Kamat
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California, USA
| | - Sharmila Majumdar
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California, USA
| | - Valentina Pedoia
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California, USA
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