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Behera NR, Dutta S, Chacko R, Barik S, Aravind G. A 22-pole radiofrequency ion trap setup for laboratory astrophysical studies. Rev Sci Instrum 2024; 95:013201. [PMID: 38197771 DOI: 10.1063/5.0166169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Accepted: 12/18/2023] [Indexed: 01/11/2024]
Abstract
The formation of large interstellar molecules starting from small reactants constitutes the bottom-up approach in astrochemistry. An experimental setup wherein the ionic reactant is prepared and allowed to react with neutral reactants within a confined interaction space is most desirable for this approach. Here, we present our efforts in constructing a 22-pole radio-frequency ion trap experimental setup that could act as a reaction chamber for the neutral reactant and trapped ions. A compact piezo-based pulsed supersonic expansion discharge source was developed to achieve efficient production of anions, particularly metal-bearing ions. In addition, two other ion sources, namely, the electron impact ion source and the plasma supersonic discharge ion source, were developed to cater to the production of specific ions. The geometry of this experimental setup facilitates photo excitation of trapped ions. The trapping efficiency was studied by trapping SF5+ and SF6- for a few seconds. The control exhibited by various parameters on the efficiency of the trapping is discussed in detail. Potential studies that could be performed with this new experimental setup are also discussed.
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Affiliation(s)
| | - Saurav Dutta
- Indian Institute of Technology Madras, Chennai 600036, India
| | - Roby Chacko
- Indian Institute of Technology Madras, Chennai 600036, India
| | - Saroj Barik
- Indian Institute of Technology Madras, Chennai 600036, India
| | - G Aravind
- Indian Institute of Technology Madras, Chennai 600036, India
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Barik S, Behera NR, Dutta S, Kushawaha RK, Sajeev Y, Ramabhadran RO, Aravind G. Molecular growth of PANH via intermolecular Coulombic decay. Sci Adv 2023; 9:eadi0230. [PMID: 37494436 PMCID: PMC10371028 DOI: 10.1126/sciadv.adi0230] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 06/22/2023] [Indexed: 07/28/2023]
Abstract
Nitrogen-bearing polycyclic aromatic hydrocarbons (PANHs) are ubiquitous in space. They are considered precursors to advanced biomolecules identified in meteorites. However, their chemical evolution into biomolecules in photodestructive astrophysical mediums remains a paradox. Here, we show that light can efficiently initiate the molecular mass growth of PANHs. Ultraviolet-photoexcited quinoline monomers, the smallest PANH, were observed to associate and intermolecular Coulombic decay between the associating monomers formed the cations of quinoline-dimer. Molecular rearrangements in the dimer cation lead to a dominant formation of cations heavier than quinoline. The enrichment of these heavier cations over all the other cations reveals the efficiency of this route for the mass growth of PANHs in space. This mechanism also leads to a highly reactive unsaturated PANH-ring via CH loss, a hitherto unknown channel in any photon-driven process. The occurrence of this efficient pathway toward complex molecules points to a rich chemistry in dense interstellar clouds.
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Affiliation(s)
- Saroj Barik
- Department of Physics, Indian Institute of Technology Madras, Chennai, India
| | - Nihar Ranjan Behera
- Department of Physics, Indian Institute of Technology Madras, Chennai, India
| | - Saurav Dutta
- Department of Physics, Indian Institute of Technology Madras, Chennai, India
| | | | - Y Sajeev
- Theoretical Chemistry Section, Bhabha Atomic Research Centre, Mumbai, India
| | | | - G Aravind
- Department of Physics, Indian Institute of Technology Madras, Chennai, India
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Barik S, Dutta S, Behera NR, Kushawaha RK, Sajeev Y, Aravind G. Ambient-light-induced intermolecular Coulombic decay in unbound pyridine monomers. Nat Chem 2022; 14:1098-1102. [PMID: 35909167 DOI: 10.1038/s41557-022-01002-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 06/16/2022] [Indexed: 11/09/2022]
Abstract
Intermolecular Coulombic decay (ICD) is a process whereby photoexcited molecules relax by ionizing their neighbouring molecules. ICD is efficient when intermolecular interactions are active and consequently it is observed only in weakly bound systems, such as clusters and hydrogen-bonded systems. Here we report an efficient ICD between unbound molecules excited at ambient-light intensities. On the photoexcitation of gas-phase pyridine monomers, well below the ionization threshold and at low laser intensities, we detected the parent and heavier-than-parent cations. The isotropic emission of slow electrons revealed ICD as the underlying process. π-π* excitation in unbounded pyridine monomers triggered an associative interaction between them, which leads to an efficient three-centre ICD. The cation resulting from the molecular association of the three pyridine centres relaxed through fragmentation. This below-threshold ionization under ambient light has implications for the understanding of radiation damage and astrochemistry.
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Affiliation(s)
- Saroj Barik
- Department of Physics, Indian Institute of Technology Madras, Chennai, India
| | - Saurav Dutta
- Department of Physics, Indian Institute of Technology Madras, Chennai, India
| | - Nihar Ranjan Behera
- Department of Physics, Indian Institute of Technology Madras, Chennai, India
| | | | - Y Sajeev
- Theoretical Chemistry Section, Bhabha Atomic Research Centre, Mumbai, India.
| | - G Aravind
- Department of Physics, Indian Institute of Technology Madras, Chennai, India.
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Sujay M, Madhavi S, Aravind G, Hasan A, Venugopalan VM. Transforaminal sacral approach for spinal anesthesia in orthopedic surgery: A novel approach. Anesth Essays Res 2015; 8:253-5. [PMID: 25886238 PMCID: PMC4173626 DOI: 10.4103/0259-1162.134526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Regional anesthesia is preferred world-wide for its distinct advantages. The benefits of regional anesthesia in patients with comorbid conditions are well-established. The administration of regional anesthesia can sometimes pose a challenge to the anesthesiologist due to the structural abnormalities of the spine. The most common difficulty encountered for spinal anesthesia in our hospital (Nalgonda District) is skeletal fluorosis. Apart from the midline approach, paramedian, and Taylor's approaches are advocated for difficult scenarios. This article reports two orthopedic cases, conducted under a novel spinal anesthesia technique, i.e., transforaminal sacral approach under C-arm guidance with a successful outcome. The sacral foraminal subarachnoid block is a method to access the subarachnoid space through the upper posterior sacral foramina.
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Affiliation(s)
- Mysore Sujay
- Department of Anaesthesiology, Kamineni Institute of Medical Sciences, Narketpally, Nalgonda, N.T.R University of Health Sciences, Andhra Pradesh, India
| | - Santpur Madhavi
- Department of Anaesthesiology, Kamineni Institute of Medical Sciences, Narketpally, Nalgonda, N.T.R University of Health Sciences, Andhra Pradesh, India
| | - G Aravind
- Department of Anaesthesiology, Kamineni Institute of Medical Sciences, Narketpally, Nalgonda, N.T.R University of Health Sciences, Andhra Pradesh, India
| | - Adil Hasan
- Department of Anaesthesiology, Kamineni Institute of Medical Sciences, Narketpally, Nalgonda, N.T.R University of Health Sciences, Andhra Pradesh, India
| | - V M Venugopalan
- Department of Anaesthesiology, Kamineni Institute of Medical Sciences, Narketpally, Nalgonda, N.T.R University of Health Sciences, Andhra Pradesh, India
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Carter CRD, Aravind G, Smalle NL, Cole JY, Savic S, Wood PMD. CVID patients with autoimmunity have elevated T cell expression of granzyme B and HLA-DR and reduced levels of Treg cells. J Clin Pathol 2012; 66:146-50. [PMID: 23172556 DOI: 10.1136/jclinpath-2012-201046] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
AIMS Common variable immunodeficiency (CVID) is a primary antibody immunodeficiency with approximately 20% of patients reporting additional autoimmune symptoms. The primary aim of this study was to compare the levels of activated and regulatory T cells (Treg cells) in CVID patients in an attempt to clarify their possible interactions leading to the generation of autoimmunity. METHODS Immunophenotyping of T cells was performed by flow cytometry using a whole blood approach. Surface expression of human leukocyte antigen HLA class II DR and intracellular levels of granzyme B in T cell subsets were assessed; Treg levels were measured using CD4 CD25, FOXp3 and CTLA-4. RESULTS CVID patients had higher levels of granzyme B and HLA-DR on CD8(+) T cells compared with control values (mean of 59% vs 30% and 45% vs 21%, respectively). Patients also had reduced levels of Treg cells compared with control values (con mean=3.24% vs pat=2.54%). Patients with autoimmunity (5/23) had a similar level of T cell activation markers to the rest of the patients but with lower Treg cells (mean of 1.1%) and reduced CD25 and CTLA-4 expression. Patients with autoimmunity had a higher ratio of activated to Treg cells compared with patients with no autoimmune symptoms. CONCLUSIONS These results highlight that reduced levels of Treg cells were associated with elevated levels of activated T cells, suggesting that reduced Treg cells in these patients may have functional consequences in allowing exaggerated T cell responses.
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Affiliation(s)
- Clive R D Carter
- Cellular Immunology Laboratory, Department of Immunology and Transplant Immunology, St James's University Hospital, Leeds, UK.
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Carter CR, Aravind G, Smalle NL, Cole JY, Cherukuri A, Savic S, Wood PM. Do defective B cells contribute to reduced Treg cells and autoimmunity in patients with Common Variable Immunodeficiency? Immunol Lett 2012; 148:39-40. [DOI: 10.1016/j.imlet.2012.07.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2012] [Accepted: 07/24/2012] [Indexed: 01/01/2023]
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Aravind G, Klærke B, Rajput J, Toker Y, Andersen LH, Bochenkova AV, Antoine R, Lemoine J, Racaud A, Dugourd P. Photodissociation pathways and lifetimes of protonated peptides and their dimers. J Chem Phys 2012; 136:014307. [PMID: 22239781 DOI: 10.1063/1.3671943] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Photodissociation lifetimes and fragment channels of gas-phase, protonated YA(n) (n = 1,2) peptides and their dimers were measured with 266 nm photons. The protonated monomers were found to have a fast dissociation channel with an exponential lifetime of ~200 ns while the protonated dimers show an additional slow dissociation component with a lifetime of ~2 μs. Laser power dependence measurements enabled us to ascribe the fast channel in the monomer and the slow channel in the dimer to a one-photon process, whereas the fast dimer channel is from a two-photon process. The slow (1 photon) dissociation channel in the dimer was found to result in cleavage of the H-bonds after energy transfer through these H-bonds. In general, the dissociation of these protonated peptides is non-prompt and the decay time was found to increase with the size of the peptides. Quantum RRKM calculations of the microcanonical rate constants also confirmed a statistical nature of the photodissociation processes in the dipeptide monomers and dimers. The classical RRKM expression gives a rate constant as an analytical function of the number of active vibrational modes in the system, estimated separately on the basis of the equipartition theorem. It demonstrates encouraging results in predicting fragmentation lifetimes of protonated peptides. Finally, we present the first experimental evidence for a photo-induced conversion of tyrosine-containing peptides into monocyclic aromatic hydrocarbon along with a formamide molecule both found in space.
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Affiliation(s)
- G Aravind
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
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Shavi GV, Kumar AR, Karthik A, Naseer M, Aravind G, Praful B, Reddy MS, Udupa N. Novel paclitaxel nanoparticles: Development, in vitro anti-tumor activity in BT-549 cells and i n vivo evaluation. J Control Release 2010; 148:e119-21. [DOI: 10.1016/j.jconrel.2010.07.091] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Aravind G, Antoine R, Klaerke B, Lemoine J, Racaud A, Rahbek DB, Rajput J, Dugourd P, Andersen LH. Sub-microsecond photodissociation pathways of gas phase adenosine 5'-monophosphate nucleotide ions. Phys Chem Chem Phys 2010; 12:3486-90. [PMID: 20355289 DOI: 10.1039/b921038e] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The sub-microsecond dissociation pathways for the protonated and deprotonated forms of adenosine 5'-monophosphate were probed in the gas phase using a linear time of flight spectrometer. The studies show two dissociation pathways for the AMP ions indicating dominant ergodic pathways in the photodissociation of these species. The photofragmentation was determined to be a single photon process for the AMP ions. Photodetachment of the AMP anion excited at 266 nm was not observed, leaving dissociation as the prominent pathway for relaxation of the excess energy in the biomolecule. The photofragments were analysed at the electrostatic ion storage ring (ELISA) and found to be similar to collision induced fragments in the case of anions but different in the case of cations.
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Affiliation(s)
- G Aravind
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
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Rajput J, Rahbek DB, Aravind G, Andersen LH. Spectral tuning of the photoactive yellow protein chromophore by H-bonding. Biophys J 2010; 98:488-92. [PMID: 20141763 DOI: 10.1016/j.bpj.2009.10.025] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2009] [Revised: 10/19/2009] [Accepted: 10/19/2009] [Indexed: 11/24/2022] Open
Abstract
Spectral tuning in the photoactive yellow protein (PYP) is investigated by performing gas-phase absorption measurements on a PYP-model chromophore with two water molecules hydrogen-bonded to it. The photoabsorption maximum shows an unusually large blue shift of 0.71 eV in going from the bare to the hydrogen-bonded chromophore. It is concluded that several interactions within the PYP protein are mutually cancelling each other, yielding an absorption maximum that is close to the absorption maximum of the bare chromophore. The system breaks apart upon photoexcitation in the gas phase by releasing the two water molecules, leaving the chromophore itself intact. The hydrogen-bonding interactions thus play an important role in stabilizing the gas phase chromophore against photofragmentation. The relaxation dynamics for the breakup process was also studied, and the timescale of relaxation via fragmentation was found to be < 25 ns.
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Affiliation(s)
- J Rajput
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
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Aravind G, Lammich L, Andersen LH. Dissociation lifetime studies of doubly deprotonated angiotensin peptides. Phys Rev E Stat Nonlin Soft Matter Phys 2009; 79:011908. [PMID: 19257070 DOI: 10.1103/physreve.79.011908] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2008] [Indexed: 05/27/2023]
Abstract
The doubly deprotonated [Asn,Val5] angiopeptide, in the gas phase, was irradiated with 266 nm photons. The time of flight (TOF) of the products formed following photoabsorption, namely, the monoanion and neutral fragments, was recorded with submicrosecond time resolution. Monte Carlo simulations of the TOF of the neutral fragments indicate that the dissociation occurs faster than 100 ns. A similar experiment performed on the Val5 angiopeptide also yielded a dissociation time shorter than 100 ns. We suggest dissociation mechanisms that account for the different number of photons required for the release of CO2.
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Affiliation(s)
- G Aravind
- Institute of Physics and Astronomy, University of Aarhus, DK-8000 Aarhus C, Denmark
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