1
|
Matt GY, Sioson E, Shelton K, Wang J, Lu C, Zaldivar Peraza A, Gangwani K, Paul R, Reilly C, Acić A, Liu Q, Sandor SR, McLeod C, Patel J, Wang F, Im C, Wang Z, Sapkota Y, Wilson CL, Bhakta N, Ness KK, Armstrong GT, Hudson MM, Robison LL, Zhang J, Yasui Y, Zhou X. St. Jude Survivorship Portal: sharing and analyzing large clinical and genomic datasets from pediatric cancer survivors. Cancer Discov 2024:742905. [PMID: 38593228 DOI: 10.1158/2159-8290.cd-23-1441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 03/08/2024] [Accepted: 03/26/2024] [Indexed: 04/11/2024]
Abstract
Childhood cancer survivorship studies generate comprehensive datasets comprising demographic, diagnosis, treatment, outcome, and genomic data from survivors. To broadly share this data, we created the St. Jude Survivorship Portal (https://survivorship.stjude.cloud), the first data portal for sharing, analyzing, and visualizing pediatric cancer survivorship data. Over 1,600 phenotypic variables and 400 million genetic variants from over 7,700 childhood cancer survivors can be explored on this free, open-access portal. Summary statistics of variables are computed on-the-fly and visualized through interactive and customizable charts. Survivor cohorts can be customized and/or divided into groups for comparative analysis. Users can also seamlessly perform cumulative incidence and regression analyses on the stored survivorship data. Using the portal, we explored the ototoxic effects of platinum-based chemotherapy, uncovered a novel association between mental health, age, and limb amputation, and discovered a novel haplotype in MAGI3 strongly associated with cardiomyopathy specifically in survivors of African ancestry.
Collapse
Affiliation(s)
- Gavriel Y Matt
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Edgar Sioson
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Kyla Shelton
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Jian Wang
- St. Jude Children's Research Hospital, Memphis, Tennessee, United States
| | - Congyu Lu
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | | | | | - Robin Paul
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Colleen Reilly
- St. Jude Children's Research Hospital, Memphis, United States
| | - Aleksandar Acić
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Qi Liu
- University of Alberta, Edmonton, Alberta, Canada
| | | | - Clay McLeod
- St. Jude Children's Research Hospital, Memphis, United States
| | - Jaimin Patel
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Fan Wang
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Cindy Im
- University of Minnesota, Minneapolis, MN, United States
| | - Zhaoming Wang
- St. Jude Children's Research Hospital, Memphis, Tennessee, United States
| | - Yadav Sapkota
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Carmen L Wilson
- St. Jude Children's Research Hospital, Memphis, TENNESSEE, United States
| | - Nickhill Bhakta
- St. Jude Children's Research Hospital, Memphis, United States
| | - Kirsten K Ness
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | | | - Melissa M Hudson
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Leslie L Robison
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Jinghui Zhang
- St. Jude Children's Research Hospital, Memphis, TN, United States
| | - Yutaka Yasui
- St. Jude Children's Research Hospital, Memphis, United States
| | - Xin Zhou
- St. Jude Children's Research Hospital, memphis, United States
| |
Collapse
|