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Aguilar A, Ahumada TJ, Amezcua Moreno N, Bohn J, Bustamante DE, Calderon MS, Cardoso E, Carranza R, Castillo M, Cazares E, Cazares E, Companion JK, Cruz J, Cuevas N, De La Torre L, Dietz DP, Fernando KM, Garcia B, Gomez P, Gonzales-Miramontes B, Hernandez Y, Huaracha K, Hughey JR, Lazaro G, Zhai Lorenzo F, Medrano D, Mendoza A, Mendoza D, Mohssin A, Orozco Medina J, Pacheco A, Palacios Ruvalcaba G, Patel J, Patel J, Patino S, Perez-Alfaro K, Ponce AN, Poso JG, Ramirez G, Ramirez HA, Resendiz N, Reyno R, Rodriguez D, Russell IA, Saenz-Verdugo P, Carmona AS, Sanchez F, Sheffer SX, Solorio C, Soto Trujillo A, Vasaya GS, Velasquez Lopez V. The complete mitochondrial and plastid genomes of the invasive marine red alga Caulacanthus okamurae (Caulacanthaceae, Rhodophyta) from Moss Landing, California, USA. Mitochondrial DNA B Resour 2020; 5:2067-2069. [PMID: 33457745 PMCID: PMC7782071 DOI: 10.1080/23802359.2020.1763870] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Caulacanthus okamurae is an invasive red alga that forms extensive mats in sheltered marine habitats around the world. To determine its genomic structure and genetic relationship to native and other non-native populations of C. okamurae, high-throughput sequencing analysis was performed on an introduced specimen from Bennett Slough, Moss Landing, California, USA. Assembly of 23,146,595 filtered 150 bp paired-end Illumina sequencing reads yielded its complete mitogenome (GenBank accession MT193839) and plastid genome (GenBank accession MT193838). The mitogenome is 25,995 bp in length and contains 50 genes. The plastid genome is 173,516 bp and contains 234 genes. Comparison of the organellar chromosomes to other Gigartinales revealed a high-level of gene synteny. BLAST analysis of marker sequences (rbcL, cox1, cox2) of C. okamurae from Moss Landing identified four identical DNA sequences: one from a specimen from a native population of C. okamurae from South Korea and three from specimens representing invasive populations from France, Spain, and the USA. These genetic results confirm the presence of C. okamurae in central California, USA, and represent the first complete mitogenome and plastid genome from the Caulacanthaceae.
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Affiliation(s)
| | - Alejandro Aguilar
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Tania J Ahumada
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Noemi Amezcua Moreno
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Jacob Bohn
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Danilo E Bustamante
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza, Amazonas, Peru
| | - Martha S Calderon
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza, Amazonas, Peru.,Laboratorio de Ecosistemas Marinos Antárticos y Sub-antárticos (LEMAS), Universidad de Magallanes, Punta Arenas, Chile
| | - Edgar Cardoso
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Rocio Carranza
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Maria Castillo
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Elizabeth Cazares
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Emmanuel Cazares
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Janelle K Companion
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Jeanette Cruz
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Neovid Cuevas
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Lizbeth De La Torre
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Daniel P Dietz
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Kathleen M Fernando
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Bryan Garcia
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Pamela Gomez
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | | | - Yuviana Hernandez
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Kayla Huaracha
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Jeffery R Hughey
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Gabriela Lazaro
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Feifei Zhai Lorenzo
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Diana Medrano
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Ailen Mendoza
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Daniel Mendoza
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Adam Mohssin
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | | | - Aislinn Pacheco
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | | | - Jankiben Patel
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Jatin Patel
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Samantha Patino
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Karina Perez-Alfaro
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Alejandra N Ponce
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Jasmine G Poso
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Gabriel Ramirez
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Hector A Ramirez
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Nathalie Resendiz
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Rachelle Reyno
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Diego Rodriguez
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Ian A Russell
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Paola Saenz-Verdugo
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Angel S Carmona
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Fabian Sanchez
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Sabrina X Sheffer
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | - Carmen Solorio
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
| | | | - Geraldine S Vasaya
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, CA, USA
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