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Wang LQ, Xiong HY, Wang WB. [Application of phylogenetic analysis in the molecular epidemiological study of infectious diseases]. Zhonghua Liu Xing Bing Xue Za Zhi 2022; 43:282-285. [PMID: 35184497 DOI: 10.3760/cma.j.cn112338-20210701-00515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The rapid development of sequencing technology brings the explosive growth of pathogen genetic data. The combination of genomic data and phylogenetic method is being used to elaborate the origin and evolution of pathogens, the time and space distribution and parameter changes in the prevalence process, and how phenotypes like antigen, virulence, and resistance change over time. This method is also being used to predict pathogen transmission trends. In this study, we described the aim of phylogeny and the process of the phylogenetic construction method. We elaborated the advantages and disadvantages and scope of application of tree-building methods including distance-based, maximum parsimony, maximum likelihood and bayesian methods. We have reviewed the application and the estimation methods of major epidemiological parameters of phylodynamics and phylogeography in domestic and foreign studies. We concluded that the time- and location-scaled phylogenetic trees are increasingly used for outbreak investigation and routine surveillance of infectious diseases.
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Affiliation(s)
- L Q Wang
- Department of Epidemiology, School of Public Health, Fudan University, Shanghai 200032, China
| | - H Y Xiong
- Department of Epidemiology, School of Public Health, Fudan University, Shanghai 200032, China
| | - W B Wang
- Department of Epidemiology, School of Public Health, Fudan University, Shanghai 200032, China
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Xu SF, Lu YH, Zhang T, Xiong HY, Wang WB. Cross-Sectional Seroepidemiologic Study of Coronavirus Disease 2019 (COVID-19) among Close Contacts, Children, and Migrant Workers in Shanghai. Int J Environ Res Public Health 2020; 17:7223. [PMID: 33561032 PMCID: PMC7579139 DOI: 10.3390/ijerph17197223] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 09/27/2020] [Accepted: 09/29/2020] [Indexed: 12/27/2022]
Abstract
(1) Background: Along with an increasing risk caused by migrant workers returning to the urban areas for the resumption of work and production and growing epidemiological evidence of possible transmission during the incubation period, a study of Coronavirus Disease 2019 (COVID-19) is warranted among key populations to determine the serum antibody against the SARS-CoV-2 and the carrying status of SARS-CoV-2 to identify potential asymptomatic infection and to explore the risk factors. (2) Method: This is a cross-sectional seroepidemiologic study. Three categories of targeted populations (close contacts, migrant workers who return to urban areas for work, and school children) will be included in this study as they are important for case identification in communities. A multi-stage sampling method will be employed to acquire an adequate sample size. Assessments that include questionnaires and blood, nasopharyngeal specimens, and feces collection will be performed via home-visit survey. (3) Ethics and Dissemination: The study was approved by the Institute Review Board of School of Public Health, Fudan University (IRB#2020-04-0818). Before data collection, written informed consent will be obtained from all participants. The manuscripts from this work will be submitted for publication in quality peer-reviewed journals and presented at national or international conferences.
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Affiliation(s)
| | | | | | | | - Wei-Bing Wang
- Department of Epidemiology, School of Public Health, Fudan University, Shanghai 200032, China; (S.-F.X.); (Y.-H.L.); (T.Z.); (H.-Y.X.)
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Lin YJ, Cai QY, Xu YY, Liu HY, Han WH, Wang Y, Tan Y, Xiong HY, Hu AQ, Zheng YJ. [Association and interaction of pre-pregnant body mass index and gestational weight gain of women on neonatal birthweight]. Zhonghua Liu Xing Bing Xue Za Zhi 2018; 39:770-775. [PMID: 29936745 DOI: 10.3760/cma.j.issn.0254-6450.2018.06.015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To investigate the association between maternal pre-pregnant body mass index and gestational weight gain, as well as their interaction on neonatal birthweight. Methods: We built a cohort in Anqing Municipal Hospital from January 2014 to March 2015, enrolling pregnant women who decided to give birth in this hospital. All women were asked to fill a questionnaire for basic information collection. Medical information of both pregnant women and their newborns were obtained through electronic medical record. Chi-square analysis, multinomial logistic regression, multiplicative and additive interaction methods were used to analyze the association between pre-pregnant body mass index and gestational weight gain as well as their interactions on birth weight of the neonates. Results: A total of 2 881 pregnant women were included in this study. Of the 2 881 newborns, 359 (12.46%) were small for gestational age (SGA) and 273 (9.48%) were large for gestational age (LGA). After adjusting the possible confounding factors, results from the multinomial logistic regression showed that pre-pregnancy underweight women were more possible to deliver SGA (aRR=1.33, 95%CI: 1.02-1.73). If the gestational weight gain was below the recommended criteria, the risk of SGA (aRR=1.64, 95%CI: 1.23-2.19) might increase. Pre-pregnancy overweight/obese could increase the risk of being LGA (aRR=1.86, 95%CI: 1.33-2.60). Maternal gestational weight gain above the recommendation level was associated with higher rates of LGA (aRR=2.03, 95%CI: 1.49-2.78). Results from the interaction analysis showed that there appeared no significant interaction between pre-pregnancy BMI and gestational weight on birthweight. Conclusion: Pre-pregnancy body mass index and gestational weight gain were independently associated with neonatal birthweight while pre-pregnancy BMI and gestational weight gain did not present interaction on birthweight.
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Affiliation(s)
- Y J Lin
- Department of Public Health Microbiology, School of Public Health, Fudan University, Shanghai 200032, China;Department of Epidemiology, School of Public Health, Fudan University, Shanghai 200032, China
| | - Q Y Cai
- Department of Public Health Microbiology, School of Public Health, Fudan University, Shanghai 200032, China
| | - Y Y Xu
- Department of Laboratory, Anqing Municipal Hospital, Anqing 246003, China
| | - H Y Liu
- Department of Laboratory, Anqing Municipal Hospital, Anqing 246003, China
| | - W H Han
- Department of Obstetrics and Gynecology, Anqing Municipal Hospital, Anqing 246003, China
| | - Y Wang
- Department of Obstetrics and Gynecology, Anqing Municipal Hospital, Anqing 246003, China
| | - Y Tan
- Department of Laboratory, Anqing Municipal Hospital, Anqing 246003, China
| | - H Y Xiong
- Department of Public Health Microbiology, School of Public Health, Fudan University, Shanghai 200032, China
| | - A Q Hu
- Department of Laboratory, Anqing Municipal Hospital, Anqing 246003, China
| | - Y J Zheng
- Department of Public Health Microbiology, School of Public Health, Fudan University, Shanghai 200032, China;Key Laboratory for Public Health Safety, Ministry of Education, School of Public Health, Fudan University, Shanghai 200032, China;Key Laboratory for Health Technology Assessment, National Commission of Health and Family Planning, School of Public Health, Fudan University, Shanghai 200032, China
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Xiong HY, Luo YF, Liu HY, Han WH, Hu AQ, Wang Y, Zheng YJ. [Comparison of results of two immunoassays for detection of hepatitis B surface antigen in pregnant women]. Zhonghua Liu Xing Bing Xue Za Zhi 2018; 38:1537-1540. [PMID: 29141345 DOI: 10.3760/cma.j.issn.0254-6450.2017.11.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To evaluate and compare the detection consistency of hepatitis B surface antigen (HBsAg) by two immunoassays: enzyme-linked immunosorbent assay (ELISA) and electrochemiluminescent immunoassay (ECLIA). Methods: A prospective study was conducted among 2 296 pregnant women recruited consecutively from January 1, 2014 to January 31, 2015 in a hospital. Blood samples were collected from them for the detection of HBsAg by using ELISA and ECLIA, Kappa test was performed on the results. Nested polymerase chain reaction and sequencing of HBV S gene were also performed in all samples. Phylogenetic analysis was performed using Mega 6.0 software. Results: The two methods had high detection consistence of HBsAg (Kappa=0.71). There were significant differences in detection result of B genotype and adw2 serotype HBV strains between two methods. Among 123 identified HBV strains, 113 belonged to genotype B and available for further analysis. The difference in detection of substitution rates between two methods or different positive groups were not significant. Compared with ELISA single positive group, the ECLIA single positive group had completely different substitution sites. Conclusion: The two methods had high detection consistence of HBsAg, but there were still 32.4% HBV DNA positive cases in ELISA/ECLIA single positive group, and complete complementary substitution sites between ELISA single positive group and ECLIA single positive group. Our results suggested that more effective detection procedure should be considered for the possible impact of the HBV silent transmission and infection.
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Affiliation(s)
- H Y Xiong
- Anqing City Hospital, Anqing 246003, China, Department of Hygienic Microbiology, School of Public Health; Anqing City Hospital, Anqing 246003, China, Key Laboratory for Health Technology Assessment, National Commission of Health and Family Planning; Anqing City Hospital, Anqing 246003, China, Key Laboratory for Public Health Safety, Ministry of Education-School of Public Health
| | - Y F Luo
- Anqing City Hospital, Anqing 246003, China, Department of Hygienic Microbiology, School of Public Health; Anqing City Hospital, Anqing 246003, China, Key Laboratory for Public Health Safety, Ministry of Education-School of Public Health
| | - H Y Liu
- Anqing City Hospital, Anqing 246003, China, Fudan University, Shanghai 200032, China; Department of Clinical Laboratory
| | - W H Han
- Anqing City Hospital, Anqing 246003, China, Department of Gynaecology and Obstetrics
| | - A Q Hu
- Anqing City Hospital, Anqing 246003, China, Fudan University, Shanghai 200032, China; Department of Clinical Laboratory
| | - Y Wang
- Anqing City Hospital, Anqing 246003, China, Department of Gynaecology and Obstetrics
| | - Y J Zheng
- Anqing City Hospital, Anqing 246003, China, Department of Hygienic Microbiology, School of Public Health; Anqing City Hospital, Anqing 246003, China, Key Laboratory for Health Technology Assessment, National Commission of Health and Family Planning; Anqing City Hospital, Anqing 246003, China, Key Laboratory for Public Health Safety, Ministry of Education-School of Public Health
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Xiong HY, Jin ZX. [Current status and prospect of cardiopulmonary bypass education and training in China]. Zhonghua Yi Xue Za Zhi 2017; 97:2984-2986. [PMID: 29061004 DOI: 10.3760/cma.j.issn.0376-2491.2017.38.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
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Reyihanguli M, Liu HY, Han WH, Luo YF, Hu AQ, Wang Y, Wang HL, Xiong HY, Zheng YJ. [Influence of intrahepatic cholestasis during pregnancy on the incidence of preterm birth]. Zhonghua Liu Xing Bing Xue Za Zhi 2017; 38:1415-1418. [PMID: 29060991 DOI: 10.3760/cma.j.issn.0254-6450.2017.10.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: Intrahepatic cholestasis during pregnancy (ICP) and its relation to incidence of preterm birth (PTB) were under study. Methods: A prospective cohort study was carried out that including all the hospitalized pregnant women with live singleton births, from January 2014 to March 2015 in Anqing Municipal Hospitals. Informed consent was followed in every pregnant woman with related demographic information collected through questionnaire and hospital electronic medical record system. Both univariate and multi-variate statistical methods were used to analyze the relations between ICP and incidence of PTB. Results: A total of 2 758 pregnant women were included in this study. The incidence proportions of ICP and PTB appeared as 7.25% and 16.28% respectively. Results from the logistic regression analysis showed that ICP increased the risk of both overall PTB (RR=2.33, 95%CI: 1.67-3.25) and medically indicated PTB (RR=8.46, 95%CI: 5.45-13.12), but not the spontaneous PTB (RR=0.94, 95%CI: 0.57-1.54). Conclusion: ICP seemed to have increased the risk on medically indicated PTB but not the spontaneous PTB.
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Affiliation(s)
- Maimaiti Reyihanguli
- Department of Hygienic Microbiology, School of Public Health; Department of Epidemiology, School of Public Health
| | - H Y Liu
- Fudan University, Shanghai 200032, China; Department of Laboratory, Anqing Municipal Hospital, Anqing 246003, China
| | - W H Han
- Department of Obstetrics and Gynecology, Anqing Municipal Hospital, Anqing 246003 China
| | - Y F Luo
- Department of Hygienic Microbiology, School of Public Health
| | - A Q Hu
- Fudan University, Shanghai 200032, China; Department of Laboratory, Anqing Municipal Hospital, Anqing 246003, China
| | - Y Wang
- Department of Obstetrics and Gynecology, Anqing Municipal Hospital, Anqing 246003 China
| | - H L Wang
- Department of Hygienic Microbiology, School of Public Health
| | - H Y Xiong
- Department of Hygienic Microbiology, School of Public Health
| | - Y J Zheng
- Department of Hygienic Microbiology, School of Public Health; Key Laboratory for Public Health Safety, Ministry of Education-School of Public Health; Key Laboratory for Health Technology Assessment, National Commission of Health and Family Planning; The Innovation Center for Social Risk Governance in Health, Shanghai 200032, China
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He YN, Xiong HY, Zheng YJ. [Progress in research of relationship between vaginal Lactobacillus and preterm delivery]. Zhonghua Liu Xing Bing Xue Za Zhi 2017; 38:406-410. [PMID: 28329949 DOI: 10.3760/cma.j.issn.0254-6450.2017.03.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The vaginal flora in most healthy women is dominated by Lactobacillus species. The absence of Lactobacillus species in vaginal flora might lead to a series of symptoms, especially in pregnant women causing adverse pregnancy outcomes, such as preterm delivery. This review focuses on the progress in the research of the relationship between vaginal Lactobacillus and preterm delivery, providing reference for the reduction of the incidence of preterm delivery.
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Affiliation(s)
- Y N He
- Department of Hygienic Microbiology, School of Public Health, Fudan University, Shanghai 200032, China; Department of Epidemiology, School of Public Health, Fudan University, Shanghai 200032, China
| | - H Y Xiong
- Department of Hygienic Microbiology, School of Public Health, Fudan University, Shanghai 200032, China
| | - Y J Zheng
- Key Laboratory for Public Health Safety, Ministry of Education-School of Public Health, Fudan University, Shanghai 200032, China; Key Laboratory for Health Technology Assessment, National Commission of Health and Family Planning, Fudan University, Shanghai 200032, China; Department of Hygienic Microbiology, School of Public Health, Fudan University, Shanghai 200032, China
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Song L, Zhang SL, Bai KH, Yang J, Xiong HY, Li X, Liu T, Liu HR. Serum agonistic autoantibodies against type-1 angiotensin II receptor titer in patients with epithelial ovarian cancer: a potential role in tumor cell migration and angiogenesis. J Ovarian Res 2013; 6:22. [PMID: 23561060 PMCID: PMC3626713 DOI: 10.1186/1757-2215-6-22] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2013] [Accepted: 04/02/2013] [Indexed: 01/08/2023] Open
Abstract
BACKGROUND Although agonistic autoantibodies against type-1 angiotensin-II receptor (AT1-AA) are frequently detected in women with preeclampsia, the clinical significance of AT1-AA in association with epithelial ovarian cancer (EOC) has not been identified. METHODS In an attempt to clarify this issue, we measured serum AT1-AA titer from EOC patients (n = 89) and healthy normal subjects (n = 55), correlated AT1-AA titer with EOC stage and grade, and demonstrated the effects of purified AT1-AA on migration of ovarian cancer cells and angiogenesis of chick embryo chorioallantoic membrane. RESULTS We found that the AT1-AA titer was significantly higher in EOC patients compared with healthy control subjects (1.77 ± 0.28 vs. 0.35 ± 0.05, P < 0.01). The positive rate was averaged by 72.1±2.5% in EOC patients and 15.5 ±1.5% in control (P < 0.01). Increased AT1-AA titer in EOC patients was associated with advanced stages and grades of EOC, and positively correlated with level of vascular endothelial growth factor (r = 0.855, P < 0.01). Furthermore, AT1-AA directly stimulated migration of ovarian cancer cells and enhanced microvascular density of chick embryo chorioallantoic membrane. These AT1-AA-mediated effects were significantly blocked either by an autoantibody-neutralizing peptide or an angiotensin II type I receptor antagonist, losartan. CONCLUSION Taken together, we found that a higher serum AT1-AA titer may be associated with advanced progression of EOC in patients and play an important role in development of EOC by promoting cancer cell migration and angiogenesis. These findings implicate that AT1-AA might be selected as a detectable biomarker and potential therapeutic target in diagnosis and treatment of EOC patients.
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Affiliation(s)
- Li Song
- Department of Pathophysiology, Capital Medical University, Beijing, P,R, China.
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Zhang X, Zhang SL, Xiong HY, DU YH, Quan L, Yang J, Ma XR, Liu HR. Vascular dysfunction in the offspring of AT1 receptor antibody-positive pregnant rats during high-salt diet. Sheng Li Xue Bao 2011; 63:149-154. [PMID: 21505730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Antibody against the angiotensin AT1 receptor (AT1-Ab) could disturb placental development. The placenta is the key organ between mother and fetus. Placental damage will seriously impair fetal growth and development in utero, leading to intrauterine growth restriction (IUGR). Based on the fetal origins of adult disease (FOAD) hypothesis, IUGR could increase a propensity to develop adult onset cardiovascular disease (CVD). The present study was designed to determine whether vascular function has changed in the adult offspring of AT1-Ab positive pregnant rats. Twenty four female rats (8-week-old, AT1-Ab negative) were randomly divided into two groups, immunized and vehicle groups. Immunized group received active immunization to establish AT1-Ab-positive model, while vehicle group was subjected to Freund's adjuvant without antigen. After 8 weeks of immunization, the antibody titers in sera from the female rats were detected by enzyme-linked immunosorbent assay (ELISA). Then all the female rats were mated with normal Wistar male rats and became pregnant. Immunized/vehicle group offspring rats (I offspring/V offspring) were raised to 40-week-old under standard chow feeding. Then the two groups' offspring rats were given a high-salt diet for 12 weeks (4% NaCl in chow feeding). Systolic blood pressure (SBP) was measured dynamically by noninvasive blood pressure system. The vascular ring experiment was performed to detect vascular function and reactivity. As detected by ELISA, the titers of antibody peaked at the 8th week (OD values: 2.75 ± 0.08 vs 0.33 ± 0.01, P < 0.01 vs vehicle group at the same time point). There was no significant difference of SBP between the two groups' offspring rats during the high-salt diet (P > 0.05). Isolated thoracic aortic rings of I offspring had significantly decreased constriction under norepinephrine treatment (P < 0.01 vs V offspring) and significantly decreased dilation under acetylcholine treatment (P < 0.05 vs V offspring). These results suggest that the offspring of AT1-Ab-positive pregnant rats are more susceptible to vascular functional abnormality while being fed high-salt diet.
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Affiliation(s)
- Xi Zhang
- Department of Pathophysiology, Capital Medical University, Beijing, China
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Sun Y, Gao SL, Hao LJ, Li L, Gu B, Ding QY, Lu PJ, Xiong HY, Li YX. Relationship between the characteristics of immunopathological expression of hepatitis C virus antigen and hepatocytic injury. Chin Med J (Engl) 1993; 106:763-6. [PMID: 7518373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
Biopsied liver tissues from 352 cases were tested for hepatitis C virus (HCVAg) with improved PAP immunohistologic chemical method. Furthermore, corresponding seroantibody to hepatitis C virus was also tested. The total HCVAg positive rate was 9.1%. The HCVAg positive rate in chronic persistent hepatitis (CPH) was 5%. The HCVAg positive rate in chronic active hepatitis (CAH) was 11.2%. The HCVAg positive rate raised gradually along with the severity of hepatocytic injury. HCVAg may be seen in necrotic liver cells exfoliating into the liver sinus, indicating a close relationship between HCVAg and hepatocytic injury. Expression of HCVAg was mostly of the nucleus type in CPH cases and was mostly of the plasma type in CAH cases. The periphery of nucleus type-expressed positive cells generally had no marked inflammatory cell infiltration. The periphery of plasma type-expressed positive cells had a certain amount of inflammatory cell infiltration. Along with the severity of hepatocytic injury, HCVAg expressed itself in a positive correlation according to the nucleus and plasma types. The HCVAg positive cells were located mostly in the lobular peripheral band and rarely located in the venoperipheral band. It was possible that this had some relation with the lobular microcirculation of blood and blood supply. In this study, there was no obvious correlation between the HCVAg positive rate in hepatic tissues and the anti-HCV positive rate in sera. Neither the patients with HCVAg positive liver tissues nor the patients with seropositive anti-HCV had any history of blood transfusion and the use of blood products.(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- Y Sun
- Department of Pathology, PLA 100th Hospital, Suzhou
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