Explainable machine learning model for predicting skeletal muscle loss during surgery and adjuvant chemotherapy in ovarian cancer

BACKGROUND

Skeletal muscle loss during treatment is associated with poor survival outcomes in patients with ovarian cancer. Although changes in muscle mass can be assessed on computed tomography (CT) scans, this labour-intensive process can impair its utility in clinical practice. This study aimed to develop a machine learning (ML) model to predict muscle loss based on clinical data and to interpret the ML model by applying SHapley Additive exPlanations (SHAP) method.

METHODS

This study included the data of 617 patients with ovarian cancer who underwent primary debulking surgery and platinum-based chemotherapy at a tertiary centre between 2010 and 2019. The cohort data were split into training and test sets based on the treatment time. External validation was performed using 140 patients from a different tertiary centre. The skeletal muscle index (SMI) was measured from pre- and post-treatment CT scans, and a decrease in SMI ≥ 5% was defined as muscle loss. We evaluated five ML models to predict muscle loss, and their performance was determined using the area under the receiver operating characteristic curve (AUC) and F1 score. The features for analysis included demographic and disease-specific characteristics and relative changes in body mass index (BMI), albumin, neutrophil-to-lymphocyte ratio (NLR), and platelet-to-lymphocyte ratio (PLR). The SHAP method was applied to determine the importance of the features and interpret the ML models.

RESULTS

The median (inter-quartile range) age of the cohort was 52 (46-59) years. After treatment, 204 patients (33.1%) experienced muscle loss in the training and test datasets, while 44 (31.4%) patients experienced muscle loss in the external validation dataset. Among the five evaluated ML models, the random forest model achieved the highest AUC (0.856, 95% confidence interval: 0.854-0.859) and F1 score (0.726, 95% confidence interval: 0.722-0.730). In the external validation, the random forest model outperformed all ML models with an AUC of 0.874 and an F1 score of 0.741. The results of the SHAP method showed that the albumin change, BMI change, malignant ascites, NLR change, and PLR change were the most important factors in muscle loss. At the patient level, SHAP force plots demonstrated insightful interpretation of our random forest model to predict muscle loss.

CONCLUSIONS

Explainable ML model was developed using clinical data to identify patients experiencing muscle loss after treatment and provide information of feature contribution. Using the SHAP method, clinicians may better understand the contributors to muscle loss and target interventions to counteract muscle loss.

Accumulation of ammonium in rice leaves in response to excess cadmium

The relationship between ammonium accumulation and senescence of detached rice leaves caused by excess cadmium (Cd) was investigated. CdCl(2) was effective in increasing ammonium content in detached rice leaves under both light and dark conditions. Both CdCl(2) and CdSO(4) induced ammonium accumulation in detached rice leaves, indicating that ammonium accumulation is induced by Cd ions. CdCl(2)-promoted senescence and ammonium accumulation is not specific for the rice cultivar used in this study. The senescence of detached rice leaves induced by CdCl(2) was found to be prior to ammonium accumulation. CdCl(2) induces more ammonium accumulation in the dark than in the light. However, CdCl(2) treatment was found to be less effective in promoting senescence in the dark than in the light. The current results suggest that ammonium accumulation is not associated with the senescence of detached rice leaves induced by Cd. Evidence was presented to show that CdCl(2)-induced ammonium accumulation in detached rice leaves is attributed to a decrease in glutamine synthetase (GS) activity.