Multi-trait assessment of early-in-life female, male and genomic measures for use in genetic selection to improve female reproductive performance of Brahman cattle

Early-in-life female and male measures with potential to be practical genetic indicators were chosen from earlier analyses and examined together with genomic measures for multi-trait use to improve female reproduction of Brahman cattle. Combinations of measures were evaluated on the genetic gains expected from selection of sires and dams for each of age at puberty (AGECL, i.e. first observation of a corpus luteum), lactation anoestrous interval in 3-year-old cows (LAI), and lifetime annual weaning rate (LAWR, i.e. the weaning rate of cows based on the number of annual matings they experienced over six possible matings). Selection was on an index of comparable records for each combination. Selection intensities were less than theoretically possible but assumed a concerted selection effort was able to be made across the Brahman breed. The results suggested that substantial genetic gains could be possible but need to be confirmed in other data. The estimated increase in LAWR in 10 years, for combinations without or with genomic measures, ranged from 8 to 12 calves weaned per 100 cows from selection of sires, and from 12 to 15 calves weaned per 100 cows from selection of sires and dams. Corresponding reductions in LAI were 60–103 days or 94–136 days, and those for AGECL were 95–125 or 141–176 days, respectively. Coat score (a measure of the sleekness or wooliness of the coat) and hip height in females, and preputial eversion and liveweight in males, were measures that may warrant wider recording for Brahman female reproduction genetic evaluation. Pregnancy-test outcomes from Matings 1 and 2 also should be recorded. Percentage normal sperm may be important to record for reducing LAI and scrotal size and serum insulin-like growth factor-I concentration in heifers at 18 months for reducing AGECL. Use of a genomic estimated breeding value (EBV) in combination with other measures added to genetic gains, especially at genomic EBV accuracies of 40%. Accuracies of genomic EBVs needed to approach 60% for the genomic EBV to be the most important contributor to gains in the combinations of measures studied.

Genome-wide association studies of female reproduction in tropically adapted beef cattle

The genetics of reproduction is poorly understood because the heritabilities of traits currently recorded are low. To elucidate the genetics underlying reproduction in beef cattle, we performed a genome-wide association study using the bovine SNP50 chip in 2 tropically adapted beef cattle breeds, Brahman and Tropical Composite. Here we present the results for 3 female reproduction traits: 1) age at puberty, defined as age in days at first observed corpus luteum (CL) after frequent ovarian ultrasound scans (AGECL); 2) the postpartum anestrous interval, measured as the number of days from calving to first ovulation postpartum (first rebreeding interval, PPAI); and 3) the occurrence of the first postpartum ovulation before weaning in the first rebreeding period (PW), defined from PPAI. In addition, correlated traits such as BW, height, serum IGF1 concentration, condition score, and fatness were also examined. In the Brahman and Tropical Composite cattle, 169 [false positive rate (FPR) = 0.262] and 84 (FPR = 0.581) SNP, respectively, were significant (P < 0.001) for AGECL. In Brahman, 41% of these significant markers mapped to a single chromosomal region on BTA14. In Tropical Composites, 16% of these significant markers were located on BTA5. For PPAI, 66 (FPR = 0.67) and 113 (FPR = 0.432) SNP were significant (P < 0.001) in Brahman and Tropical Composite, respectively, whereas for PW, 68 (FPR = 0.64) and 113 (FPR = 0.432) SNP were significant (P < 0.01). In Tropical Composites, the largest concentration of PPAI markers were located on BTA5 [19% (PPAI) and 23% (PW)], and BTA16 [17% (PPAI) and 18% (PW)]. In Brahman cattle, the largest concentration of markers for postpartum anestrus was located on BTA3 (14% for PPAI and PW) and BTA14 (17% PPAI). Very few of the significant markers for female reproduction traits for the Brahman and Tropical Composite breeds were located in the same chromosomal regions. However, fatness and BW traits as well as serum IGF1 concentration were found to be associated with similar genome regions within and between breeds. Clusters of SNP associated with multiple traits were located on BTA14 in Brahman and BTA5 in Tropical Composites.

Genetic parameters for wool production and quality traits in South Australian Merinos of the Collinsville family group

Heritabilities and phenotypic and genetic correlations for fleece traits were estimated from a data set comprising 805 male and female progeny of 44 sires of the Collinsville family group. Characteristics included in the study were greasy and clean fleece weight, yield, mean, standard deviation and coefficient of variation of fibre diameter, resistance to compression, scoured and greasy wool colour (expressed as yellowness, lightness and yellowness index), wax content, suint content, and subjectively assessed scores for greasy colour, character, handle, quality number, condition, staple formation, tip formation and density. Heritabilities of greasy and clean fleece weight, yield, mean fibre diameter and subjectively assessed fleece scores were in broad agreement with estimates from other Merino strains, but the genetic correlations of mean fibre diameter and associated characters (handle, quality number) with clean fleece weight were lower than previous estimates. Heritabilities for scoured yellowness of wool, resistance to compression and coefficient of variation of fibre diameter, which are potential additional measurements for the specification of wool in sale lots, were 0.42 (�. 0.14), 0.57 (� 0.15) and 0.47 ( � 0.15) respectively. Estimated heritabilities of wax and suint content were 0.24 (�0.11) and 0.44 ( � 0.14). Although the phenotypic correlations between measures of greasy wool colour and the corresponding measures of scoured wool colour were low (less than 0.3), the genetic correlations were moderate to high (0.4-0.9). Thus selection on the basis of greasy wool colour should lead to genetic improvements in scoured colour. The genetic correlations of resistance to compression with clean fleece weight and fibre diameter were: 0.46 (�0.21) and 0.44 (� 0.20) respectively, but there were no other strong, unfavourable correlations.

Phenotypic and genetic parameters for lamb and hogget traits in a flock of South Australian Merino sheep

The heritability of and phenotypic and genetic correlations among weaning weight (WW). greasy fleece weight (GFW), scouring yield (YLD), clean fleece weight (CFW), fibre diameter (FD), crimps per inch (CR) and staple length (SL) were estimated in a flock consisting of a control and 2 selection lines of South Australian Merino sheep. The effects of type of rearing, age of dam and sex were also examined. Estimates were compared with those currently in use in WOOLPLAN (National Performance Recording Scheme for non-pedigreed sheep) and in other studies. In general, agreement between the present study and other estimates was good, but there were some exceptions, namely: (i) standard deviation of GFW and FD; (ii) 'adjustment factors' for day of birth, type of rearing and age of dam for GFW, CFW and liveweight traits; (iii) heritability of YLD; (iv) phenotypic correlations of GFW and CFW with FD, and between YLD and CFW and (v) genetic correlations of WW with GFW, CFW and FD. It is concluded that special attention should be given to these exceptions in order to decide whether alterations to current 'accepted' parameter values are justified.