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Gräfenstein A, Brückner D, Rumancev C, Garrevoet J, Galbierz V, Schroeder WH, Schroer CG, Falkenberg G, Rosenhahn A. Single-Slice XRF Mapping of Light Elements in Frozen-Hydrated Allium schoenoprasum via a Self-Absorption-Corrected Hyperspectral Tomographic Reconstruction Approach. Anal Chem 2023. [PMID: 37384657 DOI: 10.1021/acs.analchem.3c00188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/01/2023]
Abstract
3D and 2D-cross-sectional X-ray fluorescence analysis of biological material is a powerful tool to image the distribution of elements and to understand and quantify metal homeostasis and the distribution of anthropogenic metals and nanoparticles with minimal preparation artifacts. Using tomograms recorded on cryogenically prepared leaves of Allium schoenoprasum, the cross-sectional distribution of physiologically relevant elements like calcium, potassium, manganese, and zinc could be tomographically reconstructed by peak fitting followed by a conventional maximum-likelihood algorithm with self-absorption correction to reveal the quantitative cross-sectional element distribution. If light elements such as S and P are located deep in the sample compared to the escape depth of their characteristic X-ray fluorescence lines, the quantitative reconstruction becomes inaccurate. As a consequence, noise is amplified to a magnitude where it might be misinterpreted as actual concentration. We show that a tomographic MCA hyperspectral reconstruction in combination with a self-absorption correction allows for fitting of the XRF spectra directly in real space, which significantly improves the qualitative and quantitative analysis of the light elements compared to the conventional method as noise and artifacts in the tomographic reconstruction are reduced. This reconstruction approach can substantially improve the quantitative analysis of trace elements as it allows the fitting of summed voxel spectra in anatomical regions of interest. The presented method can be applied to XRF 2D single-slice tomography data and 3D tomograms and is particularly relevant for, but not limited to, biological material in order to help retrieve self-absorption corrected quantitative reconstructions of the spatial distribution of light elements and ultra-trace-elements.
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Affiliation(s)
- A Gräfenstein
- Analytical Chemistry - Biointerfaces, Ruhr University Bochum, Universitätsstr. 150NC4, 44780 Bochum, Germany
| | - D Brückner
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Helmholtz Imaging Platform, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - C Rumancev
- Analytical Chemistry - Biointerfaces, Ruhr University Bochum, Universitätsstr. 150NC4, 44780 Bochum, Germany
| | - J Garrevoet
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - V Galbierz
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - W H Schroeder
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Nanotech Consulting, Liblarer Straβe 8, 50321 Brühl, Germany
| | - C G Schroer
- Center for X-ray and Nano Science CXNS, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Department Physik, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- Helmholtz Imaging Platform, Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - G Falkenberg
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - A Rosenhahn
- Analytical Chemistry - Biointerfaces, Ruhr University Bochum, Universitätsstr. 150NC4, 44780 Bochum, Germany
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Glazyrin K, Khandarkhaeva S, Fedotenko T, Dong W, Laniel D, Seiboth F, Schropp A, Garrevoet J, Brückner D, Falkenberg G, Kubec A, David C, Wendt M, Wenz S, Dubrovinsky L, Dubrovinskaia N, Liermann HP. Sub-micrometer focusing setup for high-pressure crystallography at the Extreme Conditions beamline at PETRA III. J Synchrotron Radiat 2022; 29:654-663. [PMID: 35510998 PMCID: PMC9070721 DOI: 10.1107/s1600577522002582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 03/07/2022] [Indexed: 06/14/2023]
Abstract
Scientific tasks aimed at decoding and characterizing complex systems and processes at high pressures set new challenges for modern X-ray diffraction instrumentation in terms of X-ray flux, focal spot size and sample positioning. Presented here are new developments at the Extreme Conditions beamline (P02.2, PETRA III, DESY, Germany) that enable considerable improvements in data collection at very high pressures and small scattering volumes. In particular, the focusing of the X-ray beam to the sub-micrometer level is described, and control of the aberrations of the focusing compound refractive lenses is made possible with the implementation of a correcting phase plate. This device provides a significant enhancement of the signal-to-noise ratio by conditioning the beam shape profile at the focal spot. A new sample alignment system with a small sphere of confusion enables single-crystal data collection from grains of micrometer to sub-micrometer dimensions subjected to pressures as high as 200 GPa. The combination of the technical development of the optical path and the sample alignment system contributes to research and gives benefits on various levels, including rapid and accurate diffraction mapping of samples with sub-micrometer resolution at multimegabar pressures.
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Affiliation(s)
- K. Glazyrin
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - S. Khandarkhaeva
- Bayerisches Geoinstitut, University of Bayreuth, Universitätsstrasse 30, 95440 Bayreuth, Germany
- Material Physics and Technology at Extreme Conditions, Laboratory of Crystallography, University of Bayreuth, Universitätsstrasse 30, 95440 Bayreuth, Germany
| | - T. Fedotenko
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
- Material Physics and Technology at Extreme Conditions, Laboratory of Crystallography, University of Bayreuth, Universitätsstrasse 30, 95440 Bayreuth, Germany
| | - W. Dong
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - D. Laniel
- Material Physics and Technology at Extreme Conditions, Laboratory of Crystallography, University of Bayreuth, Universitätsstrasse 30, 95440 Bayreuth, Germany
| | - F. Seiboth
- Center for X-ray and Nano Science CXNS, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - A. Schropp
- Center for X-ray and Nano Science CXNS, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
- Helmholtz Imaging Platform, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - J. Garrevoet
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - D. Brückner
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
- Department Physik, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - G. Falkenberg
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - A. Kubec
- Laboratory for Micro- and Nanotechnology, Paul Scherrer Institut, Forschungsstrasse 111, 5232 Villigen-PSI, Switzerland
| | - C. David
- Laboratory for Micro- and Nanotechnology, Paul Scherrer Institut, Forschungsstrasse 111, 5232 Villigen-PSI, Switzerland
| | - M. Wendt
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - S. Wenz
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - L. Dubrovinsky
- Bayerisches Geoinstitut, University of Bayreuth, Universitätsstrasse 30, 95440 Bayreuth, Germany
| | - N. Dubrovinskaia
- Material Physics and Technology at Extreme Conditions, Laboratory of Crystallography, University of Bayreuth, Universitätsstrasse 30, 95440 Bayreuth, Germany
- Department of Physics, Chemistry and Biology (IFM), Linköping University, Campus Valla, Fysikhuset F310, SE-581 83 Linköping, Sweden
| | - H.-P. Liermann
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
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3
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Höller S, Küpper H, Brückner D, Garrevoet J, Spiers K, Falkenberg G, Andresen E, Peiter E. Overexpression of METAL TOLERANCE PROTEIN8 reveals new aspects of metal transport in Arabidopsis thaliana seeds. Plant Biol (Stuttg) 2022; 24:23-29. [PMID: 34546650 DOI: 10.1111/plb.13342] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
METAL TOLERANCE PROTEIN8 (MTP8) of Arabidopsis thaliana is a member of the CATION DIFFUSION FACILITATOR (CDF) family of proteins that transports primarily manganese (Mn), but also iron (Fe). MTP8 mediates Mn allocation to specific cell types in the developing embryo, and Fe re-allocation as well as Mn tolerance during imbibition. We analysed if an overexpression of MTP8 driven by the CaMV 35S promoter has an effect on Mn tolerance during imbibition and on Mn and Fe storage in seeds, which would render it a biofortification target. Fe, Mn and Zn concentrations in MTP8-overexpressing lines in wild type and vit1-1 backgrounds were analysed by ICP-MS. Distribution of metals in intact seeds was determined by synchrotron µXRF tomography. MTP8 overexpression led to a strongly increased Mn tolerance of seeds during imbibition, supporting its effectiveness in loading excess Mn into the vacuole. In mature seeds, MTP8 overexpression did not cause a consistent increase in Mn and Fe accumulation, and it did not change the allocation pattern of these metals. Zn concentrations were consistently increased in bulk samples. The results demonstrate that Mn and Fe allocation is not determined primarily by the MTP8 expression pattern, suggesting either a cell type-specific provision of metals for vacuolar sequestration by upstream transport processes, or the determination of MTP8 activity by post-translational regulation.
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Affiliation(s)
- S Höller
- Plant Nutrition Laboratory, Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - H Küpper
- Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics & Biochemistry, Czech Academy of Sciences, České Budějovice, Czech Republic
- Department of Experimental Plant Biology, University of South Bohemia, České Budějovice, Czech Republic
| | - D Brückner
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
- Department of Physics, University of Hamburg, Hamburg, Germany
- Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany
| | - J Garrevoet
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
| | - K Spiers
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
| | - G Falkenberg
- Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany
| | - E Andresen
- Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics & Biochemistry, Czech Academy of Sciences, České Budějovice, Czech Republic
| | - E Peiter
- Plant Nutrition Laboratory, Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
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Rumancev C, Gräfenstein A, Vöpel T, Stuhr S, von Gundlach AR, Senkbeil T, Garrevoet J, Jolmes L, König B, Falkenberg G, Ebbinghaus S, Schroeder WH, Rosenhahn A. X-ray fluorescence analysis of metal distributions in cryogenic biological samples using large-acceptance-angle SDD detection and continuous scanning at the Hard X-ray Micro/Nano-Probe beamline P06 at PETRA III. J Synchrotron Radiat 2020; 27:60-66. [PMID: 31868737 PMCID: PMC6927521 DOI: 10.1107/s1600577519014048] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Accepted: 10/15/2019] [Indexed: 06/10/2023]
Abstract
A new Rococo 2 X-ray fluorescence detector was implemented into the cryogenic sample environment at the Hard X-ray Micro/Nano-Probe beamline P06 at PETRA III, DESY, Hamburg, Germany. A four sensor-field cloverleaf design is optimized for the investigation of planar samples and operates in a backscattering geometry resulting in a large solid angle of up to 1.1 steradian. The detector, coupled with the Xspress 3 pulse processor, enables measurements at high count rates of up to 106 counts per second per sensor. The measured energy resolution of ∼129 eV (Mn Kα at 10000 counts s-1) is only minimally impaired at the highest count rates. The resulting high detection sensitivity allows for an accurate determination of trace element distributions such as in thin frozen hydrated biological specimens. First proof-of-principle measurements using continuous-movement 2D scans of frozen hydrated HeLa cells as a model system are reported to demonstrate the potential of the new detection system.
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Affiliation(s)
- C. Rumancev
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
| | - A. Gräfenstein
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
| | - T. Vöpel
- Department of Physical Chemistry II, Ruhr University Bochum, 44780 Bochum, Germany
| | - S. Stuhr
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
| | - A. R. von Gundlach
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
| | - T. Senkbeil
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
| | - J. Garrevoet
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, Hamburg, Germany
| | - L. Jolmes
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
| | - B. König
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
| | - G. Falkenberg
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, Hamburg, Germany
| | - S. Ebbinghaus
- Department of Physical Chemistry II, Ruhr University Bochum, 44780 Bochum, Germany
- Institute of Physical and Theoretical Chemistry, TU Braunschweig, Rebenring 56, 38106 Braunschweig, Germany
| | - W. H. Schroeder
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, Hamburg, Germany
- Nanotech Consulting, Arnoldsweilerstrasse 10, 52382 Niederzier, Germany
| | - A. Rosenhahn
- Analytical Chemistry – Biointerfaces, Ruhr University Bochum, 44780 Bochum, Germany
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Lindenberg P, Arana LR, Mahnke LK, Rönfeldt P, Heidenreich N, Doungmo G, Guignot N, Bean R, Chapman HN, Dierksmeyer D, Knoska J, Kuhn M, Garrevoet J, Mariani V, Oberthuer D, Pande K, Stern S, Tolstikova A, White TA, Beyerlein KR, Terraschke H. New insights into the crystallization of polymorphic materials: from real-time serial crystallography to luminescence analysis. REACT CHEM ENG 2019. [DOI: 10.1039/c9re00191c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This article unravels reaction conditions governing the formation of polymorphic structures in solution down to the single particle level applying, for instance, unprecedented real-time serial crystallography measurements during a synthesis process.
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Ryan CG, Kirkham R, de Jonge MD, Siddons DP, van der Ent A, Pagés A, Boesenberg U, Kuczewski AJ, Dunn P, Jensen M, Liu W, Harris H, Moorhead GF, Paterson DJ, Howard DL, Afshar N, Garrevoet J, Spiers K, Falkenberg G, Woll AR, De Geronimo G, Carini GA, James SA, Jones MWM, Fisher LA, Pearce M. The Maia Detector and Event Mode. ACTA ACUST UNITED AC 2018. [DOI: 10.1080/08940886.2018.1528430] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
| | | | - M. D. de Jonge
- Australian Synchrotron, ANSTO, Clayton, Victoria, Australia
| | - D. P. Siddons
- Brookhaven National Laboratory, Upton, New York, USA
| | - A. van der Ent
- Sustainable Minerals Institute, University of Queensland, Brisbane, Queensland, Australia
| | - A. Pagés
- CSIRO, Clayton, Victoria, Australia
| | - U. Boesenberg
- European X-ray Free-Electron Laser Facility, Schenefeld, Germany
| | | | - P. Dunn
- CSIRO, Clayton, Victoria, Australia
| | | | - W. Liu
- CSIRO, Clayton, Victoria, Australia
| | - H. Harris
- Department of Chemisty, University of Adelaide, Adelaide, Australia
| | | | - D. J. Paterson
- Australian Synchrotron, ANSTO, Clayton, Victoria, Australia
| | - D. L. Howard
- Australian Synchrotron, ANSTO, Clayton, Victoria, Australia
| | - N. Afshar
- Australian Synchrotron, ANSTO, Clayton, Victoria, Australia
| | - J. Garrevoet
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - K. Spiers
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - G. Falkenberg
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - A. R. Woll
- Cornell High Energy Synchrotron Source, Ithaca, New York, USA
| | | | - G. A. Carini
- Brookhaven National Laboratory, Upton, New York, USA
| | - S. A. James
- The Florey Institute of Neuroscience and Mental Health, Parkville, Victoria, Australia
| | - M. W. M. Jones
- Institute for Future Environments, Queensland University of Technology, Brisbane, Queensland, Australia
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Niemiec MJ, De Samber B, Garrevoet J, Vergucht E, Vekemans B, De Rycke R, Björn E, Sandblad L, Wellenreuther G, Falkenberg G, Cloetens P, Vincze L, Urban CF. Trace element landscape of resting and activated human neutrophils on the sub-micrometer level. Metallomics 2016; 7:996-1010. [PMID: 25832493 DOI: 10.1039/c4mt00346b] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Every infection is a battle for trace elements. Neutrophils migrate first to the infection site and accumulate quickly to high numbers. They fight pathogens by phagocytosis and intracellular toxication. Additionally, neutrophils form neutrophil extracellular traps (NETs) to inhibit extracellular microbes. Yet, neutrophil trace element characteristics are largely unexplored. We investigated unstimulated and phorbol myristate acetate-stimulated neutrophils using synchrotron radiation X-ray fluorescence (SR-XRF) on the sub-micron spatial resolution level. PMA activates pinocytosis, cytoskeletal rearrangements and the release of NETs, all mechanisms deployed by neutrophils to combat infection. By analyzing Zn, Fe, Cu, Mn, P, S, and Ca, not only the nucleus but also vesicular granules were identifiable in the elemental maps. Inductively Coupled Plasma Mass Spectrometry (ICP-MS) revealed a neutrophil-specific composition of Zn, Fe, Cu, and Mn in comparison with J774 and HeLa cells, indicating a neutrophil-specific metallome complying with their designated functions. When investigating PMA-activated neutrophils, the SR-XRF analysis depicted typical subcellular morphological changes: the transformation of nucleus and granules and the emergence of void vacuoles. Mature NETs were evenly composed of Fe, P, S, and Ca with occasional hot spots containing Zn, Fe, and Ca. An ICP-MS-based quantification of NET supernatants revealed a NETosis-induced decrease of soluble Zn, whereas Fe, Cu, and Mn concentrations were only slightly affected. In summary, we present a combination of SR-XRF and ICP-MS as a powerful tool to analyze trace elements in human neutrophils. The approach will be applicable and valuable to numerous aspects of nutritional immunity.
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Affiliation(s)
- M J Niemiec
- Department of Clinical Microbiology/MIMS, Umeå University, Sweden.
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Deruytter D, Vandegehuchte M, Garrevoet J, Vergucht E, Blust R, De Schamphelaere K, Vincze L, Janssen CR. The combined effects of DOC and salinity on the accumulation and toxicity of copper in mussel larvae. Commun Agric Appl Biol Sci 2013; 78:15-18. [PMID: 23875291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Affiliation(s)
- D Deruytter
- Laboratory of Environmental Toxicicology and Aquatic Ecology, Jozef Plateaustraat 22, B-9000 Ghent
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