Advances in Computational Techniques for Bio-Inspired Cellular Materials in the Field of Biomechanics: Current Trends and Prospects

Cellular materials have a wide range of applications, including structural optimization and biomedical applications. Due to their porous topology, which promotes cell adhesion and proliferation, cellular materials are particularly suited for tissue engineering and the development of new structural solutions for biomechanical applications. Furthermore, cellular materials can be effective in adjusting mechanical properties, which is especially important in the design of implants where low stiffness and high strength are required to avoid stress shielding and promote bone growth. The mechanical response of such scaffolds can be improved further by employing functional gradients of the scaffold's porosity and other approaches, including traditional structural optimization frameworks; modified algorithms; bio-inspired phenomena; and artificial intelligence via machine learning (or deep learning). Multiscale tools are also useful in the topological design of said materials. This paper provides a state-of-the-art review of the aforementioned techniques, aiming to identify current and future trends in orthopedic biomechanics research, specifically implant and scaffold design.

Endophytic Trichoderma species from rubber trees native to the Brazilian Amazon, including four new species

Fungi belonging to the genus Trichoderma have been widely recognized as efficient controllers of plant diseases. Although the majority of isolates currently deployed, thus far, have been isolated from soil, endophytic Trichoderma spp. is considered to be a promising option for application in biocontrol. In this study, 30 endophytic Trichoderma isolates-obtained from the leaves, stems, and roots of wild Hevea spp. in the Brazilian Amazon-were analyzed using specific DNA barcodes: sequences of internal transcribed spacers 1 and 2 of rDNA (ITS region), genes encoding translation elongation factor 1-α (TEF1-α), and the second largest subunit of RNA polymerase II (RPB2). The genealogical concordance phylogenetic species recognition (GCPSR) concept was used for species delimitation. A phylogenetic analysis showed the occurrence of Trichoderma species, such as T. erinaceum, T. ovalisporum, T. koningiopsis, T. sparsum, T. lentiforme, T. virens, and T. spirale. Molecular and morphological features resulted in the discovery of four new species, such as T. acreanum sp. nov., T. ararianum sp. nov., T. heveae sp. nov., and T. brasiliensis sp. nov. The BI and ML analyses shared a similar topology, providing high support to the final trees. The phylograms show three distinct subclades, namely, T. acreanum and T. ararianum being paraphyletic with T. koningiopsis; T. heveae with T. subviride; and T. brasiliensis with T. brevicompactum. This study adds to our knowledge of the diversity of endophytic Trichoderma species in Neotropical forests and reveals new potential biocontrol agents for the management of plant diseases.

Numerical implementation of an osmo-poro-visco-hyperelastic finite element solver: application to the intervertebral disc

This work deals with the finite element (FE) implementation of a biphasic poroelastic formulation specifically developed to address the intricate behaviour of the Intervertebral Disc (IVD) and other highly hydrated soft tissues. This formulation is implemented in custom FE solver V-Biomech, being the validation performed with a lumbar IVD model, which was compared against the analogous FE model of Williams et al. and the experiments of Tyrrell et al. Good agreement with these benchmarks was achieved, meaning that V-Biomech and its novel poroelastic formulation are a viable alternative for simulation of biphasic soft tissues.

Influence of the Adopted Balloon Modeling Strategies in the Stent Deployment Procedure: An In-Silico Analysis

PURPOSE

As the promoter of the stent expansion, the balloon plays a very important role, offering a strong influence on the deployment process. Balloon-artery interaction is pointed as a probable cause of restenosis, stressing the relevance of balloon modeling when simulating the stenting procedure. In this work, an in-silico study of the balloon modeling strategies is performed.

METHODS

Ultrasonic-microcasting is a novel technology that allows obtaining stents manufactured in magnesium alloys, being suggested as a promising solution. However, this technique demands superior stent strut thickness, which may have an impact on the stent deployment procedure. The influence of the balloon modeling is studied through the simulation of different balloon geometries (open- or taper-ended) and material constitutive model (linear elastic or hyperelastic) on the expanded configuration of a stent manufactured through ultrasonic-microcasting.

RESULTS

The results obtained suggest that the choice of balloon type has small impact in terms of demanded pressure to inflate the balloon and in the stent final radius achieved at fully-expanded configuration. Additionally, it was proved that the balloon-type influences the stent expanded profile along its length and diameter as a result of the different deformation behavior exhibited by the balloon.

CONCLUSION

The hyperelastic taper-ended balloon suggests being the model that better correlates with both experimental and clinical results regarding the expanded balloon profile during the procedure.

In silico evaluation of the stress fields on the cortical bone surrounding dental implants: Comparing root-analogue and screwed implants

Tooth loss is a problem that affects both old and young people. It may be caused by several conditions, such as poor oral hygiene, lifestyle choices or even diseases like periodontal disease, tooth grinding or diabetes. Nowadays, replacing a missing tooth by an implant is a very common process. However, many limitations regarding the actual strategies can be enumerated. Conventional screwed implants tend to induce high levels of stress in the peri-implant bone area, leading to bone loss, bacterial bio-film formation, and subsequent implant failure. In this sense, root-analogue dental implants are becoming promising solutions for immediate implantation due to their minimally invasive nature, improved bone stress distribution and because they do not require bone drilling, sinus lift, bone augmentation nor other traumatic procedures. The aim of this study was to analyse and compare, by means of FEA, the stress fields of peri-implant bone around root-analogue and screwed conventional zirconia implants. For that purpose, one root-analogue implant, one root-analogue implant with flaps, two conventional implants (with different threads) and a replica of a natural tooth were modelled. COMSOL was used to perform the analysis and implants were subjected to two simultaneous loads: 100 N axially and 100 N oblique (45°). RESULTS: revealed that root-analogue implants, namely with flaps, should be considered as promising alternatives for dental implant solutions since they promote a better stress distribution in the cortical bone when compared with conventional implants.

Bipolaris marantae sp. nov., A Novel Helminthosporoid Species Causing Foliage Blight of the Garden Plant Maranta leuconeura in Brazil

A severe leaf spot, turning to foliage blight, was observed on leaves of Maranta leuconeura growing in a garden in Brazil (state of Rio de Janeiro) in 2015. A dematiaceous hyphomycete bearing a morphology typical of a helminthosporoid fungi was regularly found in association with diseased tissues. The fungus was isolated and pathogenicity was demonstrated through the completion of Koch's postulates. A morphology and molecular analysis led to the conclusion that the fungus belonged to the genus Bipolaris, which is characterized by having fusiform conidia, externally thickened and truncate hila and a bipolar pattern of germination. Additionally, homology of internal transcribed spacer and GAPDH sequences with sequences of other Bipolaris species, confirmed its generic placement. A phylogenetic study also indicated clearly that the fungus on M. leuconeura is phylogenetically distinct from related species of this genus, leading to the proposal of the new species Bipolaris marantae.

The feasibility of a custom-made endoprosthesis in mandibular reconstruction: Implant design and finite element analysis

This work studies the feasibility of custom-made endoprosthesis in the reconstruction of major mandibular defects. The natural anatomical and occlusal relations are used to accurately reconstruct a mandibular defect. The customized implant allows the accurate restoration of the facial profile and aesthetics. The biomechanical behaviour of mandibular endoprosthesis was validated with Finite Element Analysis for three masticatory tasks, namely incisal, right molar and left group clenching. The implanted mandible shows displacement fields and stress distributions very similar to the intact mandible. The strain fields observed along the bone-implant interface may promote bone maintenance and ingrowth. The preliminary results show that this implant may be a reliable alternative to other prosthetic mandibular reconstruction approaches.

Long-Term Creep Behavior of the Intervertebral Disk: Comparison between Bioreactor Data and Numerical Results

The loaded disk culture system is an intervertebral disk (IVD)-oriented bioreactor developed by the VU Medical Center (VUmc, Amsterdam, The Netherlands), which has the capacity of maintaining up to 12 IVDs in culture, for approximately 3 weeks after extraction. Using this system, eight goat IVDs were provided with the essential nutrients and submitted to compression tests without losing their biomechanical and physiological properties, for 22 days. Based on previous reports (Paul et al., 2012, 2013; Detiger et al., 2013), four of these IVDs were kept in physiological condition (control) and the other four were previously injected with chondroitinase ABC (CABC), in order to promote degenerative disk disease (DDD). The loading profile intercalated 16 h of activity loading with 8 h of loading recovery to express the standard circadian variations. The displacement behavior of these eight IVDs along the first 2 days of the experiment was numerically reproduced, using an IVD osmo-poro-hyper-viscoelastic and fiber-reinforced finite element (FE) model. The simulations were run on a custom FE solver (Castro et al., 2014). The analysis of the experimental results allowed concluding that the effect of the CABC injection was only significant in two of the four IVDs. The four control IVDs showed no signs of degeneration, as expected. In what concerns to the numerical simulations, the IVD FE model was able to reproduce the generic behavior of the two groups of goat IVDs (control and injected). However, some discrepancies were still noticed on the comparison between the injected IVDs and the numerical simulations, namely on the recovery periods. This may be justified by the complexity of the pathways for DDD, associated with the multiplicity of physiological responses to each direct or indirect stimulus. Nevertheless, one could conclude that ligaments, muscles, and IVD covering membranes could be added to the FE model, in order to improve its accuracy and properly describe the recovery periods.

Intervertebral disc creep behavior assessment through an open source finite element solver

Degenerative Disc Disease (DDD) is one of the largest health problems faced worldwide, based on lost working time and associated costs. By means of this motivation, this work aims to evaluate a biomimetic Finite Element (FE) model of the Intervertebral Disc (IVD). Recent studies have emphasized the importance of an accurate biomechanical modeling of the IVD, as it is a highly complex multiphasic medium. Poroelastic models of the disc are mostly implemented in commercial finite element packages with limited access to the algorithms. Therefore, a novel poroelastic formulation implemented on a home-developed open source FE solver is briefly addressed throughout this paper. The combination of this formulation with biphasic osmotic swelling behavior is also taken into account. Numerical simulations were devoted to the analysis of the non-degenerated human lumbar IVD time-dependent behavior. The results of the tests performed for creep assessment were inside the scope of the experimental data, with a remarkable improvement of the numerical accuracy when compared with previously published results obtained with ABAQUS(®). In brief, this in-development open-source FE solver was validated with literature experimental data and aims to be a valuable tool to study the IVD biomechanics and DDD mechanisms.

Additions to the mycobiota of the invasive weed Miconia calvescens (Melastomataceae)

Miconia calvescens (Melastomataceae) is a shrub or small tree native to the Neotropics that has become one of the worst invaders of forest ecosystems, particularly in Pacific islands such as Hawaii and French Polynesia. It has been a target for biological control for more than 10 y, both with arthropod and pathogen natural enemies. Until now Colletotrichum gloeosporioides f. sp. miconiae was the only organism to be used in biological control against this weed. This fungus was introduced both in Hawaii and in French Polynesia in the late 1990s/early 2000s, where it has caused some damage to the weed, but it became evident that additional agents are needed to achieve adequate control. Exploratory surveys for plant pathogens as potential biocontrol agents of M. calvescens were undertaken in Brazil, Costa Rica and Ecuador and yielded a diverse list of pathogens, including one phytoplasma, two nematodes, one oomycete and numerous fungi. A study including the description of five fungal species found attacking M. calvescens was published recently. Herein the following additional fungi also belonging to the mycobiota of M. calvescens are described: Hyalosphaera ornata sp. nov, Microsphaeropsis miconiae sp. nov., Myrothecium miconiae sp. nov., Phyllachora miconiiphila sp. nov., as well as Hyalosphaera miconiae, Lembosia melastomatum and Microsphaeropsis clidemiae, which are recorded here for the first time on this host. Although preliminary our observations of damage to M. calvescens caused by these seven fungal species did not indicate any potential for use in classical biological control.

Pseudocercospora ixoricola Causing Leaf Spots on Ixora coccinea in Brazil

Ixora coccinea, known as jungle geranium, flame of the woods, or flame of the forest, is a shrub in the Rubiaceae native to Eastern India and is widely cultivated for its showy red globose inflorescences. It was introduced in Brazil in the beginning of the 19th century where it became a popular ornamental (2). Recently, leaf spots were observed on I. coccinea foliage in Brazil. Severely diseased plants were unsightly with loss of foliage and remaining foliage was heavily spotted and yellowed. Sparse colonies of a fungus were consistently observed to be associated with diseased tissues. Slides were prepared by scraping colonized surfaces with a scalpel and mounting the fungal structures in lactophenol. Observations, measurements, and photographs were prepared with a light microscope (Olympus BX 50). The fungus was isolated in pure culture in plates containing V8 juice agar and incubated at 25°C. Pathogenicity was verified by placing pure culture plugs, obtained from actively growing colonies, onto healthy leaves of I. coccinea still attached to living plants left in a dew chamber. After 48 h, plants were removed and transferred to a greenhouse. Controls consisted of leaves of two separate healthy plants on which sterile culture medium plugs were deposited. Typical leaf spot symptoms appeared 11 days after inoculation and sporulation was observed after 30 days, but was not observed on the controls. Lesions on leaves were subcircular to polygonal or irregular, reddish brown to dark brown, 3.5 to 12 mm in diameter, coalescing, and leading to premature abscission. Fungus morphology was as follows: stromata absent; sporulation nearly indistinct under the dissecting microscope; conidiophores hypophyllous, either emerging from the stomata in small fascicles or isolate and formed from external mycelium, obclavate to cylindrical, 15 to 60 × 3.0 to 6.0 μm, 3 to 7 septate, obliquely constricted at septae, simple or branched, thin walled, brown, smooth; conidiogenous loci inconspicuous, not darkened, unthickened; conidia obclavate to cylindrical, straight to slightly curved, 17.5 to 89.0 × 3.0 to 5.0 μm, apex obtuse, base obconic-truncate, 1 to 7 obliquely septate, subhyaline, thin walled, eguttulate, smooth. Except for minor differences on conidiophore and conidial length, morphology was as described for Pseudocercospora ixoricola (4). Representative samples collected in the states of Minas Gerais (VIC 31216 - May 2009) and Rio de Janeiro (VIC 31217 - July 2009) were deposited in the local herbarium. Additional ad hoc observations indicate a widespread distribution of this disease in southeastern Brazil. Until now the sole cercosporoid fungus recorded on I. coccinea was P. ixorae from Asia and North America. There is also a record of this fungal species from an Ixora sp. from Brazil (1). Features such as the absence of stromata and the shape and size of conidiophores and conidia, separates it readily from P. ixoricola and P. ixoriana (a third species of Pseudocercospora known to be associated with plants in the genus Ixora). To our knowledge, this is the first record of P. ixoricola in South America and the first time it is recorded as a pathogen of I. coccinea. Previously, this fungus was only known in association with I. javanica in Singapore (3). References: (1) U. Braun and F. C. O. Freire. Cryptogam. Mycol. 23:295, 2002. (2) D. Hottz et al. Rev. Bras. Biociências, 5:642, 2007. (3) J. M. Yen. Rev. Mycol. 31:109, 1966. (4) J. M. Yen and G. Lim. Gard. Bull. Singap. 33:151, 1980.

Th1 and Th2 immunological profile induced by cysteine proteinase in murine leishmaniasis

This study evaluated the immune response to three synthetic peptides (pI, VMVEQVICFD; pII, VGGGLCFE; pIII, PYFLGSIMNTCHYT) from the COOH-terminal region of Leishmania amazonensis cysteine proteinases, in BALB/c- and CBA-infected mice with this parasite. Only BALB/c mice, previously inoculated with pI, showed a distinct exacerbation of the lesion. Blastogenesis assays were performed with lymph node cells from the group of mice infected with L. amazonensis, but not inoculated with the peptides, and we detected lymphoproliferative responses in BALB/c and CBA mice with a 5.0x and 2.5x stimulation index, respectively. Cell phenotypes were evaluated and in both mouse strains CD8(+)cells proliferated more extensively than CD4(+)cells. INF-gamma and nitric oxide were detected only in supernatants obtained from CBA mouse lymph node cell cultures, whereas IL-4 was detected in supernatant cultures from both strains of mice. Our results indicate a preferential stimulation of CD8(+)T-cell subsets by the pI cysteine proteinase peptide and the induction of both Th1 and Th2 phenotypes during L. amazonensis infections in both BALB/c and CBA mice. We suggest that the pI peptide from the COOH-terminal region of the cysteine proteinase induces immune responses different from those elicited by the whole molecule.

The use of metal chelate affinity chromatography on the isolation of Leishmania chagasi promastigote hydrophobic proteinases

In this work, we have assessed the possibility of isolating metalloproteinase fractions from infective Leishmania chagasi promastigotes. Our strategy was the association of the Triton X-114 method with iminodiacetic chromatography enriched with Zn2+. Thus, by using acid conditions, it was possible to isolate two fractions containing two polypeptides, 59 and 63 kDa. The enzymatic activity assay indicated that the two fractions and the two polypeptides had proteinase activities. In addition, it was proposed that those proteinase activities were affected by the presence of 1,10-phenanthroline, a metalloproteinase inhibitor. With this gentle chromatography strategy proposed it is possible to obtain metalloproteinases from L. chagasi in folding that preserve the enzyme activity. This is important for further studies on pathological complications observed in visceral leishmaniasis.