scRNA-seq Reveals Novel Genetic Pathways and Sex Chromosome Regulation in Tribolium Spermatogenesis

Spermatogenesis is critical to sexual reproduction yet evolves rapidly in many organisms. High-throughput single-cell transcriptomics promises unparalleled insight into this important process but understanding can be impeded in nonmodel systems by a lack of known genes that can reliably demarcate biologically meaningful cell populations. Tribolium castaneum, the red flour beetle, lacks known markers for spermatogenesis found in insect species like Drosophila melanogaster. Using single-cell sequencing data collected from adult beetle testes, we implement a strategy for elucidating biologically meaningful cell populations by using transient expression stage identification markers, weighted principal component clustering, and SNP-based haploid/diploid phasing. We identify populations that correspond to observable points in sperm differentiation and find species specific markers for each stage. Our results indicate that molecular pathways underlying spermatogenesis in Coleoptera are substantially diverged from those in Diptera. We also show that most genes on the X chromosome experience meiotic sex chromosome inactivation. Temporal expression of Drosophila MSL complex homologs coupled with spatial analysis of potential chromatin entry sites further suggests that the dosage compensation machinery may mediate escape from meiotic sex chromosome inactivation and postmeiotic reactivation of the X chromosome.

Adaptive Variation in Homolog Number Within Transcript Families Promotes Expression Divergence in Reef-Building Coral

Gene expression, especially in multi-species experiments, is used to gain insight into the genetic basis of how organisms adapt and respond to changing environments. However, evolutionary processes which can influence gene expression patterns between species such as the presence of paralogs which arise from gene duplication events are rarely accounted for. Paralogous transcripts can alter the transcriptional output of a gene and thus exclusion of these transcripts can obscure important biological differences between species. To address this issue, we investigated how differences in transcript family size is associated with divergent gene expression patterns in five species of Caribbean reef-building corals. We demonstrate that transcript families that are rapidly evolving in terms of size have increased levels of expression divergence. Additionally, these rapidly evolving transcript families are enriched for multiple biological processes, with genes involved in the coral innate immune system demonstrating pronounced variation in homolog number between species. Overall, this investigation demonstrates the importance of incorporating paralogous transcripts when comparing gene expression across species by influencing both transcriptional output and the number of transcripts within biological processes. As this investigation was based on transcriptome assemblies, additional insights into the relationship between gene duplications and expression patterns will likely emergence once more genome assemblies are available for study.

Direct electron microscopy study on the morphological diversity of bacteriophage populations in lake plusssee

Direct electron microscopy of bacteriophages adsorbed to a carbon film without prior enrichment by specific host strains or concentration by physical or chemical methods was used to study the morphological diversity of natural bacteriophage assemblages in a North German lake. All samples contained a mixture of morphologically different tailed viruses, which were regarded as bacteriophages. Most of them had isometric heads and long noncontractile tails, belonging to morphotype B1 (Siphoviridae). In addition, members of morphotypes A1 (Myoviridae), B2 (Siphoviridae with elongated heads), and C1 (Podoviridae) were present in lower numbers. Only one cubic virus was detected, while no filamentous or pleomorphic phages were found. Up to 11 different phages per sample, and a total of 39 phages when all samples were considered together, could be distinguished by morphological criteria. The total number of phages was estimated to be on the order of 10/ml.

[Drinking water supply with reference to geogenic arsenic contamination]

Geogenic Arsenic in Drinking Water. Drinking water production of surface spring water in southern Lower Saxony (Niedersachsen, Germany) was reduced because of microbiological contaminations and unreliably variable water reserves. Surface spring water in general has a low arsenic content. As a consequence ground water has been increasingly used for drinking water. Thus, high geogenic concentrations of arsenic in the central "Buntsandstein" in southern Lower Saxony caused high arsenic contents in the groundwater. Under the regulation of the German Drinking Water Ordinance (1986) the limit for total arsenic (40 micrograms/l) was exceeded in 2% of 150 fountains, wells and sources in southern Lower Saxony. Because of the well-known cancerogenic potential of arsenic the limit for total arsenic in drinking water was reduced from 40 micrograms/l to 10 micrograms/l suspending the new standard value until January 1996. This regulation based on new calculations revealing a skin cancer risk of roughly 6:10,000 and a mortality risk of roughly 1:10(6) in respect of lifetime in case of arsenic concentrations of 10 micrograms As/l drinking water. After that limit change 40% of 150 wells and sources in southern Lower Saxony exceeded the arsenic limit of 10 micrograms/l drinking water. As a matter of fact, it became necessary for a large number of water supply works to eliminate arsenic from the drinking water by technical means or to dilute drinking water with high concentrations of arsenic.

[Establishment of a method for determining the association between Legionella sp. and Amoeba sp. using polymerase chain reaction]

With two pairs of primers for the amplification of the MIP- (macrophage infectivity potentiator) and the 5S rDNA-fragment, it was possible to establish a DNA extraction and a PCR method for the detection of Legionella sp. in water-samples and, after cultivation, in Amoeba sp. Therefore, water-samples from a warm water-system in a hospital were taken. In all samples, legionellae were detected by the PCR method and identified by cultivation and a direct immunofluorescence-method as L. pneumophila (serogroup 1). Legionellae and amoebae of the same water sample were cocultured. Legionellae were also adherent at the outer-membrane. To separate the amoebae from the legionellae, the amoebae were sedimented selectively by centrifugation at 200 x g. This washing procedure had to be repeated seven times in order to eliminate the extraamoebale legionellae for sure. After DNA-extraction of water samples and heat treatment of the intraamoebale legionellae respectively, the amplification was performed with the MIP- and 5S rDNA-primers. In 14 of 16 cocultivations growth of legionellae was found. This result and the detection of legionellae and amoebae in the same water samples suggest that an infection of amoebae may also take place in the water system of the hospital. This is important for the disinfection as a procedure to eliminate legionellae, since intraamoebale bacteria are more resistant to environmental manipulation. Because in two of the cocultivations no growth of legionellae in amoebae was found, it can be assumed that only specific subtypes of legionellae can infect amoebae species.