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Rocha GD, de Simoni Gouveia JJ, da Costa MM, Soares RAN, Gouveia GV. Resistance and virulence in Staphylococcus aureus by whole-genome sequencing: a comparative approach in blaZ-positive isolates. Braz J Microbiol 2024; 55:955-967. [PMID: 38265572 PMCID: PMC10920469 DOI: 10.1007/s42770-023-01243-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 12/28/2023] [Indexed: 01/25/2024] Open
Abstract
Mastitis caused by Staphylococcus aureus is a worldwide problem in dairy farms, in part because of the pathogenicity of the bacteria, biofilm formation, and mechanisms of antimicrobial resistance that make the disease difficult to diagnose and treat, which is typically done with the use of beta-lactam antibiotics. The aim of the present study was to determine the virulence and resistance factors of S. aureus isolates from subclinical mastitis, blaZ + /mecA - /mecC - , resistant and sensitive to oxacillin. All isolates were classified as CC97 by MLST analysis, a clonal complex well adapted to the mammary gland and although STAU23 and STAU73 were resistant to oxacillin while STAU32 and STAU78 were sensitive, the genomic analysis identified only the blaZ operon corresponding to resistance to beta-lactams. However, the presence of the sdrC gene was revealed exclusively in resistant isolates, an important adhesin in the colonization process that potentiates pathogenicity in S. aureus. In addition, resistance islands (REIs) were identified in these isolates, suggesting more conserved REIs. In the analysis of SNPs throughout the genome, mutations were found in the trmB and smpB genes of the resistant isolates and in the murD and rimM genes of the sensitive isolates. This study highlights the potential benefit of genome-wide characterization tools to identify molecular mechanisms of S. aureus in bovine mastitis.
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Affiliation(s)
- Gabriela Dias Rocha
- Universidade Federal Do Vale Do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho S/N, C1, Petrolina, PE, 56300-000, Brazil
| | - João José de Simoni Gouveia
- Universidade Federal Do Vale Do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho S/N, C1, Petrolina, PE, 56300-000, Brazil
| | - Mateus Matiuzzi da Costa
- Universidade Federal Do Vale Do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho S/N, C1, Petrolina, PE, 56300-000, Brazil
| | - Riani Ananda Nunes Soares
- Universidade Federal Do Vale Do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho S/N, C1, Petrolina, PE, 56300-000, Brazil
| | - Gisele Veneroni Gouveia
- Universidade Federal Do Vale Do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho S/N, C1, Petrolina, PE, 56300-000, Brazil.
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Maia JCDS, Silva GADA, Cunha LSDB, Gouveia GV, Góes-Neto A, Brenig B, Araújo FA, Aburjaile F, Ramos RTJ, Soares SC, Azevedo VADC, Costa MMD, Gouveia JJDS. Genomic Characterization of Aeromonas veronii Provides Insights into Taxonomic Assignment and Reveals Widespread Virulence and Resistance Genes throughout the World. Antibiotics (Basel) 2023; 12:1039. [PMID: 37370358 DOI: 10.3390/antibiotics12061039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 05/23/2023] [Accepted: 06/09/2023] [Indexed: 06/29/2023] Open
Abstract
Aeromonas veronii is a Gram-negative bacterial species that causes disease in fish and is nowadays increasingly recurrent in enteric infections of humans. This study was performed to characterize newly sequenced isolates by comparing them with complete genomes deposited at the NCBI (National Center for Biotechnology Information). Nine isolates from fish, environments, and humans from the São Francisco Valley (Petrolina, Pernambuco, Brazil) were sequenced and compared with complete genomes available in public databases to gain insight into taxonomic assignment and to better understand virulence and resistance profiles of this species within the One Health context. One local genome and four NCBI genomes were misidentified as A. veronii. A total of 239 virulence genes were identified in the local genomes, with most encoding adhesion, motility, and secretion systems. In total, 60 genes involved with resistance to 22 classes of antibiotics were identified in the genomes, including mcr-7 and cphA. The results suggest that the use of methods such as ANI is essential to avoid misclassification of the genomes. The virulence content of A. veronii from local isolates is similar to those complete genomes deposited at the NCBI. Genes encoding colistin resistance are widespread in the species, requiring greater attention for surveillance systems.
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Affiliation(s)
- José Cleves da Silva Maia
- Graduate Program in Animal Science, Agricultural Sciences Campus, Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
- Center for Open Access Genomic Analysis (CALAnGO), Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
| | - Gabriel Amorim de Albuquerque Silva
- Center for Open Access Genomic Analysis (CALAnGO), Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
| | - Letícia Stheffany de Barros Cunha
- Graduate Program in Animal Science, Agricultural Sciences Campus, Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
- Center for Open Access Genomic Analysis (CALAnGO), Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
| | - Gisele Veneroni Gouveia
- Center for Open Access Genomic Analysis (CALAnGO), Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
| | - Aristóteles Góes-Neto
- Laboratory of Molecular Computational Biology of Fungi (LBMCF), Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, Minas Gerais, Brazil
| | - Bertram Brenig
- Institute of Veterinary Medicine, University of Göttingen, 37077 Göttingen, Niedersachsen, Germany
| | - Fabrício Almeida Araújo
- Biological Engineering Laboratory, Institute of Biological Sciences, Federal University of Pará (UFPA), Belém 66075-110, Pará, Brazil
| | - Flávia Aburjaile
- Preventive Veterinary Medicine Department, Veterinary School, Federal University of Minas Gerais, Belo Horizonte 31270-901, Minas Gerais, Brazil
| | - Rommel Thiago Jucá Ramos
- Biological Engineering Laboratory, Institute of Biological Sciences, Federal University of Pará (UFPA), Belém 66075-110, Pará, Brazil
| | - Siomar Castro Soares
- Department of Microbiology, Immunology, and Parasitology, Federal University of Triângulo Mineiro, Uberaba 38025-180, Minas Gerais, Brazil
| | - Vasco Ariston de Carvalho Azevedo
- Laboratory of Cellular and Molecular Genetics (LGCM), Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, Minas Gerais, Brazil
| | - Mateus Matiuzzi da Costa
- Center for Open Access Genomic Analysis (CALAnGO), Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
| | - João José de Simoni Gouveia
- Center for Open Access Genomic Analysis (CALAnGO), Federal University of Vale of São Francisco (Univasf), Petrolina 56304-917, Pernambuco, Brazil
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Meira TM, da Costa MM, de Simoni Gouveia JJ, Soares RAN, Tavares MRS, Fernandes AWC, Gouveia GV. Action of crude ethanol extract of Hymenaea martiana leaf, gallic acid, and polypyrrole (PPy) against Aeromonas hydrophila. Braz J Microbiol 2023; 54:1191-1202. [PMID: 36807089 PMCID: PMC10235323 DOI: 10.1007/s42770-023-00922-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 02/06/2023] [Indexed: 02/20/2023] Open
Abstract
Pisciculture represents one of the industries with the fastest growth rates worldwide. However, it presents obstacles to its development, such as bacteriosis, which is conventionally treated with antibiotics. The indiscriminate and inappropriate use of antibiotics can lead to bacterial resistance, thus alternatives to the use of antibiotics have been researched. The study aimed to analyze the potential of crude ethanol extract (CEE) from Hymenaea martiana leaf, gallic acid (GA), and polypyrrole (PPy) against Aeromonas hydrophila. Tests were performed to determine the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of the compounds individually and in synergy (checkerboard) against A. hydrophila and in silico tests between the compounds evaluated. The CEE of H. martiana leaf and PPy were effective against A. hydrophila with MBC results of 3125 μg/mL for the CEE of H. martiana and 125 μg/mL for PPy. Evaluating the GA, a MIC and MBC of 125 μg/mL was obtained. In the interaction tests (checkerboard, using PPy/CEE and PPy/GA), there was a significant reduction in individual introductions. Thus, for the PPy/CEE tests, we had a reduction of MIC/MBC to 1.95 and 781.25 μg/mL, and for the synergy tests between PPy/GA to 7.8125 and 31.125 μg/mL, respectively. The synergy tests are encouraging, and it is possible to verify a decrease of up to 98% in the introduction of PPy, 75% in CEE for H. martiana and 75.1% for GA, when compared to their individual tests. The tests with GA are encouraging due to GA's effectiveness as an antimicrobial agent and high synergy with polypyrrole, both in vitro results and molecular docking experiments showed the actions at the same activation site in A. hydrophila. In vivo tests evaluating isolated components of CEE from H. martiana in synergy with PPy should be performed, to verify the quality of the interactions and the improvement of the immune responses of the animals. It was evidenced that gallic acid, a substance isolated from the extract, tends to have more promising results. This is relevant since the industry has been developing these compounds for different uses, thus providing easier access to the product. Thus, the present study indicates an efficient alternative in the use of bioactive compounds as substitutes for conventional antimicrobials.
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Ibelli AMG, Peixoto JDO, Zanella R, Gouveia JJDS, Cantão ME, Coutinho LL, Marchesi JAP, Pizzol MSD, Marcelino DEP, Ledur MC. Downregulation of growth plate genes involved with the onset of femoral head separation in young broilers. Front Physiol 2022; 13:941134. [PMID: 36003650 PMCID: PMC9393217 DOI: 10.3389/fphys.2022.941134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 07/08/2022] [Indexed: 11/13/2022] Open
Abstract
Femoral head separation (FHS) is characterized by the detachment of growth plate (GP) and articular cartilage, occurring in tibia and femur. However, the molecular mechanisms involved with this condition are not completely understood. Therefore, genes and biological processes (BP) involved with FHS were identified in 21-day-old broilers through RNA sequencing of the femoral GP. 13,487 genes were expressed in the chicken femoral head transcriptome of normal and FHS-affected broilers. From those, 34 were differentially expressed (DE; FDR ≤0.05) between groups, where all of them were downregulated in FHS-affected broilers. The main BP were enriched in receptor signaling pathways, ossification, bone mineralization and formation, skeletal morphogenesis, and vascularization. RNA-Seq datasets comparison of normal and FHS-affected broilers with 21, 35 and 42 days of age has shown three shared DE genes (FBN2, C1QTNF8, and XYLT1) in GP among ages. Twelve genes were exclusively DE at 21 days, where 10 have already been characterized (SHISA3, FNDC1, ANGPTL7, LEPR, ENSGALG00000049529, OXTR, ENSGALG00000045154, COL16A1, RASD2, BOC, GDF10, and THSD7B). Twelve SNPs were associated with FHS (p < 0.0001). Out of those, 5 were novel and 7 were existing variants located in 7 genes (RARS, TFPI2, TTI1, MAP4K3, LINK54, and AREL1). We have shown that genes related to chondrogenesis and bone differentiation were downregulated in the GP of FHS-affected young broilers. Therefore, these findings evince that candidate genes pointed out in our study are probably related to the onset of FHS in broilers.
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Affiliation(s)
- Adriana Mércia Guaratini Ibelli
- Embrapa Suínos e Aves, Concórdia, Brazil
- Programa de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, Guarapuava, Brazil
| | - Jane de Oliveira Peixoto
- Embrapa Suínos e Aves, Concórdia, Brazil
- Programa de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, Guarapuava, Brazil
| | | | | | | | - Luiz Lehmann Coutinho
- Laboratório de Biotecnologia Animal, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de SP, Piracicaba, Brazil
| | | | | | | | - Mônica Corrêa Ledur
- Embrapa Suínos e Aves, Concórdia, Brazil
- Programa de Pós-Graduação Em Zootecnia, Universidade do Estado de SC, UDESC-Oeste, Chapecó, Brazil
- *Correspondence: Mônica Corrêa Ledur,
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Goldoni I, Ibelli AMG, Fernandes LT, Peixoto JDO, Hul LM, Cantão ME, Gouveia JJDS, Ledur MC. Comprehensive Analyses of Bone and Cartilage Transcriptomes Evince Ion Transport, Inflammation and Cartilage Development-Related Genes Involved in Chickens’ Femoral Head Separation. Animals (Basel) 2022; 12:ani12060788. [PMID: 35327184 PMCID: PMC8944783 DOI: 10.3390/ani12060788] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 03/15/2022] [Accepted: 03/17/2022] [Indexed: 12/13/2022] Open
Abstract
Simple Summary Femoral head necrosis (FHN) and other locomotor problems cause severe impacts on the poultry industry due to huge economic losses and reduced animal welfare. Femoral head separation (FHS), the initial phase of FHN, is usually a subclinical condition characterized by the detachment of articular cartilage from the bone. In this study, we aimed to identify genes and biological processes involved with FHS in broilers. A better understanding of the FHS molecular mechanisms can help to develop strategies to reduce this condition in chickens. Here, we described several genes that have their expression altered in the articular cartilage and femur when normal and FHS-affected animals were compared. Furthermore, genetic variants were found differing between the studied groups. Therefore, performing an integrated analysis of these datasets, we were able to detect genes and variants related to FHS in chickens. Some of them, such as SLC4A1, RHAG, ANK1, MKNK2, SPTB, ADA, C7 and EPB420 genes were highlighted and should be further explored to validate them as candidates to FHS and FHN in chickens and possibly in humans. Abstract Femoral head separation (FHS) is usually a subclinical condition characterized by the detachment of articular cartilage from the bone. In this study, a comprehensive analysis identifying shared and exclusive expression profiles, biological processes (BP) and variants related to FHS in the femoral articular cartilage and growth plate in chickens was performed through RNA sequencing analysis. Thirty-six differentially expressed (DE) genes were shared between femoral articular cartilage (AC) and growth plate (GP) tissues. Out of those, 23 genes were enriched in BP related to ion transport, translation factors and immune response. Seventy genes were DE exclusively in the AC and 288 in the GP. Among the BP of AC, the response against bacteria can be highlighted, and for the GP tissue, the processes related to chondrocyte differentiation and cartilage development stand out. When the chicken DE genes were compared to other datasets, eight genes (SLC4A1, RHAG, ANK1, MKNK2, SPTB, ADA, C7 and EPB420) were shared between chickens and humans. Furthermore, 89 variants, including missense in the SPATS2L, PRKAB1 and TRIM25 genes, were identified between groups. Therefore, those genes should be more explored to validate them as candidates to FHS/FHN in chickens and humans.
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Affiliation(s)
- Iara Goldoni
- Programa de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, R. Salvatore Renna, 875, Guarapuava 85015-430, PR, Brazil; (I.G.); (J.d.O.P.); (L.M.H.)
| | - Adriana Mércia Guaratini Ibelli
- Programa de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, R. Salvatore Renna, 875, Guarapuava 85015-430, PR, Brazil; (I.G.); (J.d.O.P.); (L.M.H.)
- Embrapa Suínos e Aves, Rodovia BR 153, km 110, Concórdia 89715-899, SC, Brazil; (L.T.F.); (M.E.C.)
- Correspondence: (A.M.G.I.); (M.C.L.); Tel.: +55-49-3441-3217 (A.M.G.I.); +55-49-3441-0411 (M.C.L.)
| | - Lana Teixeira Fernandes
- Embrapa Suínos e Aves, Rodovia BR 153, km 110, Concórdia 89715-899, SC, Brazil; (L.T.F.); (M.E.C.)
| | - Jane de Oliveira Peixoto
- Programa de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, R. Salvatore Renna, 875, Guarapuava 85015-430, PR, Brazil; (I.G.); (J.d.O.P.); (L.M.H.)
- Embrapa Suínos e Aves, Rodovia BR 153, km 110, Concórdia 89715-899, SC, Brazil; (L.T.F.); (M.E.C.)
| | - Ludmila Mudri Hul
- Programa de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, R. Salvatore Renna, 875, Guarapuava 85015-430, PR, Brazil; (I.G.); (J.d.O.P.); (L.M.H.)
| | - Maurício Egídio Cantão
- Embrapa Suínos e Aves, Rodovia BR 153, km 110, Concórdia 89715-899, SC, Brazil; (L.T.F.); (M.E.C.)
| | - João José de Simoni Gouveia
- Programa de Pós-Graduação em Ciências Veterinárias no Semiárido, Universidade Federal do Vale do São Francisco, UNIVASF, Rodovia BR 407, 12 Lote 543, Petrolina 56300-000, PE, Brazil;
| | - Mônica Corrêa Ledur
- Embrapa Suínos e Aves, Rodovia BR 153, km 110, Concórdia 89715-899, SC, Brazil; (L.T.F.); (M.E.C.)
- Programa de Pós-Graduação em Zootecnia, UDESC-Oeste, Rua Beloni Trombeta Zanin, 680E, Chapecó 89815-630, SC, Brazil
- Correspondence: (A.M.G.I.); (M.C.L.); Tel.: +55-49-3441-3217 (A.M.G.I.); +55-49-3441-0411 (M.C.L.)
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Rocha GD, Nogueira JF, Gomes Dos Santos MV, Boaventura JA, Nunes Soares RA, José de Simoni Gouveia J, Matiuzzi da Costa M, Gouveia GV. Impact of polymorphisms in blaZ, blaR1 and blaI genes and their relationship with β-lactam resistance in S. aureus strains isolated from bovine mastitis. Microb Pathog 2022; 165:105453. [PMID: 35217180 DOI: 10.1016/j.micpath.2022.105453] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 02/16/2022] [Accepted: 02/17/2022] [Indexed: 11/29/2022]
Abstract
There is not a consensus between the presence of the genotypic resistance marker gene and the phenotypic resistance to β-lactams in Staphylococcus aureus, which means, positive S. aureus blaZ isolates demonstrating sensitivity to β-lactams. The present study aimed to characterize the blaZ, blaR1 and blaI genes, identify and evaluate single nucleotide polymorphisms (SNPs) and their relationship with β-lactam resistance in samples of Staphylococcus aureus obtained from cases of bovine mastitis. Five isolates (two resistant and three sensitive to oxacillin) of Staphylococcus aureus with detected production of beta-lactamase, previously evaluated as containing the blaZ gene and negative for the mecA and mecC genes, had the bla operon completely sequenced. Impacts on the protein sequence due to the detected polymorphisms were evaluated by modeling the proteins encoded by the blaZ, blaR1 and blaI genes using a three-dimensional model structure obtained from the Protein Data Bank (PDB) database. Fifteen SNPs were detected in the blaZ gene, 30 in the blaR1 gene and three in the blaI gene. These SNPs caused alterations in amino acid sites. Deleterious mutations were detected in the blaZ gene (E146G, P218S, Y221C) and the blaR1 gene (K481E). Molecular docking analysis revealed that polymorphisms in the blaZ gene may explain the phenotypic sensitivity in isolates that contain the resistance marker gene. Although sensitive and resistant isolates encode beta-lactamase, these proteins are functionally altered due to a change in the binding site with the antibiotic.
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Affiliation(s)
- Gabriela Dias Rocha
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil
| | - Joel Fonseca Nogueira
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil
| | - Marion Venâncio Gomes Dos Santos
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil
| | - Joanna Adrielly Boaventura
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil
| | - Riani Ananda Nunes Soares
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil
| | - João José de Simoni Gouveia
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil
| | - Mateus Matiuzzi da Costa
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil
| | - Gisele Veneroni Gouveia
- Universidade Federal do Vale do São Francisco, Campus Ciências Agrárias, Rodovia Km 12, Lote 543, Projeto de Irrigação Nilo Coelho s/n, C1, Petrolina, PE, 56300-000, Brazil.
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de Sant'ana AS, Silva APR, do Nascimento SPO, Moraes AA, Nogueira JF, Bezerra FCM, da Costa CF, de Simoni Gouveia JJ, Gouveia GV, de Souza Rodrigues RT, Bonfa HC, Menezes DR. Tannin as a modulator of rumen microbial profile, apparent digestibility and ingestive behavior of lactating goats: A preliminary metagenomic view of goats adaptability to tannin. Res Vet Sci 2022; 145:159-168. [DOI: 10.1016/j.rvsc.2022.02.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 12/13/2021] [Accepted: 02/02/2022] [Indexed: 11/26/2022]
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Santos CRO, Gouveia JJDS, Gouveia GV, Bezerra FCM, Nogueira JF, Baraúna Júnior D. Molecular screening for the mutation associated with canine degenerative myelopathy (SOD1:c.118G > A) in German Shepherd dogs in Brazil. PLoS One 2020; 15:e0242347. [PMID: 33196688 PMCID: PMC7668602 DOI: 10.1371/journal.pone.0242347] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 10/30/2020] [Indexed: 12/01/2022] Open
Abstract
Canine Degenerative Myelopathy is a late onset recessive autosomal disease characterized by a progressive ascending degeneration of the spinal cord. Two causal mutations are associated with this disease: a transition (c.118G>A) in exon 2 of the SOD1 that was described in several breeds and a transversion (c.52A>T) in exon 1 of the same gene described in Bernese Mountain dogs. The aim of this study was to understand the impact of the SOD1:c.118G > A mutation by genotyping a population of German Shepherd dogs in Brazil. A PCR-RFLP approach was used to genotype 97 healthy individuals belonging from the Northeast (Bahia and Pernambuco states) and South (Santa Catarina state) regions of Brazil. A total of 95 individuals were successfully genotyped resulting in an observed genotype frequency (with 95% confidence interval) of: 0.758 (0.672–0.844), 0.242 (0.156–0.328) and 0.000 (0.000–0.000) for “GG”, “AG” and “AA” genotypes, respectively. To our knowledge, this is the first attempt to describe the presence of the “A” allele associated with CDM (SOD1:c.118G > A) in German Shepherd dogs in Brazil and, as such, these results contribute toward important epidemiological data in this country and to the knowledge of the distribution of the aforementioned mutation worldwide.
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Affiliation(s)
- Cássia Regina Oliveira Santos
- Postgraduate Program in Veterinary Sciences in the Semiarid, Federal University of Vale do São Francisco, Petrolina, Pernambuco, Brazil
- University Veterinary Clinic, Federal University of Vale do São Francisco, Petrolina, Pernambuco, Brazil
- * E-mail:
| | | | - Gisele Veneroni Gouveia
- Department of Animal Sciences, Federal University of Vale do São Francisco, Pernambuco, Brazil
| | - Flávia Caroline Moreira Bezerra
- Postgraduate Program in Veterinary Sciences in the Semiarid, Federal University of Vale do São Francisco, Petrolina, Pernambuco, Brazil
| | - Joel Fonseca Nogueira
- Postgraduate Program in Veterinary Sciences in the Semiarid, Federal University of Vale do São Francisco, Petrolina, Pernambuco, Brazil
| | - Durval Baraúna Júnior
- Department of Veterinary Medicine, Federal University of Vale do São Francisco, Petrolina, Pernambuco, Brazil
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Soares RAN, Nogueira JF, Neto JBDM, Gouveia GV, Ribeiro MN, Gouveia JJDS. PSI-9 Molecular characterization of Berganês sheep, a locally adapted ecotype from Brazilian semi-arid region. J Anim Sci 2019. [DOI: 10.1093/jas/skz258.583] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
The Ovis aries species is phenotypically diverse and it is bred around the world for meat, milk and wool production. In the 1980s, small farmers in the semi-arid region of Pernambuco, Brazil, initiated the introgression of genes from Santa Inês and Bergamácia breeds in their local sheep of undefined breed, and the selection of individuals in an unstructured form, giving rise to an ecotype with unique characteristics called Berganês. The aim of this study was to perform genetic structure analysis of the Berganês ecotype population on farms in the state of Pernambuco using the Illumina® BeadChip OvineSNP50 high density chip as a way of increasing knowledge about the ecotype. Animals from seven farms were genotyped, totaling 96 animals (17 males and 79 females). Of the 54,241 Single Nucleotide Polymorphism (SNPs) found, we elected the ones with GenCall Score > 0.5, Hardy-Weinberg equilibrium (significance at 0.01) and lower allele frequency (MAF) > 0.2. In addition, only SNPs located on the autosomal chromosomes were maintained, according to version 4.0 of the sheep genome, with 39,250 SNPs being selected. The observed and expected mean heterozygosity values were, respectively, 0.37159 and 0.37943. The F statistics found were: FIS = 0.02622, FST = 0 and FIT = 0.02394. Most of the variability found (97.61%), which was estimated by AMOVA, is uniformly distributed within the herds and the Principal Component Analysis (PCA) did not allow the visual identification of a substructure considering herds, sex or phenotypic characteristics (coat color, ear size and insertion, and head morphology). Thus, the genetic variability presented in the animals of the Berganês ecotype is distributed homogeneously among the herds analyzed. Therefore, the genetic characterization presented here represents a key point in the creation of conservation plans and breeding programs, improving the efficiency of selection processes and the selection of breeders.
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Affiliation(s)
| | - Joel Fonseca Nogueira
- Masters in Veterinary Science in the Semi-Arid, Universidade Federal do Vale do São Francisco
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Silva WEDLE, Amanso ES, Peixoto RDM, Gouveia JJDS, Gouveia GV, Costa MMD. MINIMUM BACTERICIDAL CONCENTRATION OF COMMERCIAL DISINFECTANTS ON STAPHYLOCOCCUS SPP. ISOLATED FROM MASTITIS IN GOATS AND DETECTION OF THE icaD GENE. Ciênc anim bras 2019. [DOI: 10.1590/1089-6891v20e-53193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Abstract This study aimed to evaluate the in vitro efficacy of commercial disinfectants on Staphylococcus spp., isolated from mastitis cases in goats, and to associate the observed resistance with the presence of the icaD gene. Broth microdilution was employed to evaluate the in vitro antimicrobial activity of the disinfectants, whereas the Congo Red technique was used for the evaluation of biofilm production and amplification of the icaD gene. All evaluated samples were sensitive to disinfectants, with the following ranges of activity: quaternary ammonium (0.13 - 21.33 µg/ml), chlorhexidine (4.00 - 313.00 µg/ml) and iodine (190.00 - 12500.00 µg/ml); however, the sodium hypochlorite-based disinfectant showed no bactericidal activity in the concentration range from 15.0 to 0.03 µg/ml. The icaD gene presented a frequency of 14.7% in the isolate samples. Fisher’s exact test showed a significant effect of the relation between the minimum bactericidal concentration value of the quaternary ammonium-based disinfectant and the presence/absence of the icaD gene (P <0.01). Commercial disinfectants with quaternary ammonium, chlorhexidine and iodine active ingredients presented in vitro activity even at concentrations lower than those recommended by the manufacturers. Therefore, the periodic evaluation of the sensitivity profile of the disinfectants must be performed.
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Nogueira JF, Borges AS, de Andrade DGA, Bezerra FCM, de Oliveira-Filho JP, Cunha SMF, Gouveia GV, Gouveia JJDS. Deepening the knowledge about dermatosparaxis in Brazilian White Dorper population: Basis for the development and implementation of a genetic disease eradication program in sheep. Livest Sci 2018. [DOI: 10.1016/j.livsci.2018.10.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Campos BM, do Carmo AS, da Silva TBR, Verardo LL, de Simoni Gouveia JJ, Mendes Malhado CH, Barbosa da Silva MVG, Souza Carneiro PL. Identification of artificial selection signatures in Caracu breed lines selected for milk production and meat production. Livest Sci 2017. [DOI: 10.1016/j.livsci.2017.10.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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de Simoni Gouveia JJ, Paiva SR, McManus CM, Caetano AR, Kijas JW, Facó O, Azevedo HC, de Araujo AM, de Souza CJH, Yamagishi MEB, Carneiro PLS, Braga Lôbo RN, de Oliveira SMP, da Silva MVG. Genome-wide search for signatures of selection in three major Brazilian locally adapted sheep breeds. Livest Sci 2017. [DOI: 10.1016/j.livsci.2017.01.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Gouveia JJDS, Cunha SMF, de Almeida EM, Nogueira JF, Souza Filho JLP, Menezes DR, Veneroni Gouveia G. Molecular and genealogical analyses reveal multiple sources of the mutation associated with dermatosparaxis in Brazilian White Dorper sheep. Small Rumin Res 2016. [DOI: 10.1016/j.smallrumres.2016.05.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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de Simoni Gouveia JJ, da Silva MVGB, Paiva SR, de Oliveira SMP. Identification of selection signatures in livestock species. Genet Mol Biol 2014; 37:330-42. [PMID: 25071397 PMCID: PMC4094609 DOI: 10.1590/s1415-47572014000300004] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2013] [Accepted: 02/27/2014] [Indexed: 11/22/2022] Open
Abstract
The identification of regions that have undergone selection is one of the principal goals of theoretical and applied evolutionary genetics. Such studies can also provide information about the evolutionary processes involved in shaping genomes, as well as physical and functional information about genes/genomic regions. Domestication followed by breed formation and selection schemes has allowed the formation of very diverse livestock breeds adapted to a wide variety of environments and with special characteristics. The advances in genomics in the last five years have enabled the development of several methods to detect selection signatures and have resulted in the publication of a considerable number of studies involving livestock species. The aims of this review are to describe the principal effects of natural/artificial selection on livestock genomes, to present the main methods used to detect selection signatures and to discuss some recent results in this area. This review should be useful also to research scientists working with wild animals/non-domesticated species and plant biologists working with breeding and evolutionary biology.
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Affiliation(s)
- João José de Simoni Gouveia
- Colegiado Acadêmico de Zootecnia , Universidade Federal do Vale do São Francisco , Petrolina, PE , Brazil . ; Programa de Doutorado Integrado em Zootecnia , Universidade Federal do Ceará , Fortaleza, CE , Brazil
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