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Ghodke PP, Mali JR, Patra A, Rizzo CJ, Guengerich FP, Egli M. Enzymatic bypass and the structural basis of miscoding opposite the DNA adduct 1,N 2-ethenodeoxyguanosine by human DNA translesion polymerase η. J Biol Chem 2021; 296:100642. [PMID: 33839151 PMCID: PMC8121704 DOI: 10.1016/j.jbc.2021.100642] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 04/01/2021] [Accepted: 04/05/2021] [Indexed: 11/26/2022] Open
Abstract
Etheno (ε)-adducts, e.g., 1,N2-ε−guanine (1,N2-ε-G) and 1,N6-ε−adenine (1,N6-ε-A), are formed through the reaction of DNA with metabolites of vinyl compounds or with lipid peroxidation products. These lesions are known to be mutagenic, but it is unknown how they lead to errors in DNA replication that are bypassed by DNA polymerases. Here we report the structural basis of misincorporation frequencies across from 1,N2-ε-G by human DNA polymerase (hpol) η. In single-nucleotide insertions opposite the adduct 1,N2-ε-G, hpol η preferentially inserted dGTP, followed by dATP, dTTP, and dCTP. This preference for purines was also seen in the first extension step. Analysis of full-length extension products by LC-MS/MS revealed that G accounted for 85% of nucleotides inserted opposite 1,N2-ε-G in single base insertion, and 63% of bases inserted in the first extension step. Extension from the correct nucleotide pair (C) was not observed, but the primer with A paired opposite 1,N2-ε-G was readily extended. Crystal structures of ternary hpol η insertion-stage complexes with nonhydrolyzable nucleotides dAMPnPP or dCMPnPP showed a syn orientation of the adduct, with the incoming A staggered between adducted base and the 5’-adjacent T, while the incoming C and adducted base were roughly coplanar. The formation of a bifurcated H-bond between incoming dAMPnPP and 1,N2-ε-G and T, compared with the single H-bond formed between incoming dCMPnPP and 1,N2-ε-G, may account for the observed facilitated insertion of dGTP and dATP. Thus, preferential insertion of purines by hpol η across from etheno adducts contributes to distinct outcomes in error-prone DNA replication.
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Affiliation(s)
- Pratibha P Ghodke
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee, USA
| | - Jyotirling R Mali
- Department of Chemistry, College of Arts and Science, Vanderbilt University, Nashville, Tennessee, USA
| | - Amritraj Patra
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee, USA
| | - Carmelo J Rizzo
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee, USA; Department of Chemistry, College of Arts and Science, Vanderbilt University, Nashville, Tennessee, USA; Vanderbilt-Ingram Cancer Center, Nashville, Tennessee, USA
| | - F Peter Guengerich
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee, USA; Vanderbilt-Ingram Cancer Center, Nashville, Tennessee, USA
| | - Martin Egli
- Department of Biochemistry, School of Medicine, Vanderbilt University, Nashville, Tennessee, USA; Vanderbilt-Ingram Cancer Center, Nashville, Tennessee, USA.
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Bhosle MR, Kharote SA, Bondle GM, Mali JR. Tromethamine organocatalyzed efficient tandem-multicomponent synthesis of new thiazolyl-4-thiazolidinones in aqueous medium. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2019.1597124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Manisha R. Bhosle
- Department of Chemistry, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra, 431004, India
| | - Sayali A. Kharote
- Department of Chemistry, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra, 431004, India
| | - Giribala M. Bondle
- Department of Chemistry, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra, 431004, India
| | - Jyotirling R. Mali
- College of Pharmacy, Dongguk University-Seoul, Goyang, 10326, Republic of Korea
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Jalani HB, Mali JR, Park H, Lee JK, Lee K, Lee K, Choi Y. Iodine‐Promoted One‐pot Synthesis of Highly Substituted 4‐Aminopyrroles and Bis‐4‐aminopyrrole from Aryl Methyl Ketones, Arylamines, and Enamines. Adv Synth Catal 2018. [DOI: 10.1002/adsc.201800899] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Hitesh B. Jalani
- School of Life Sciences and BiotechnologyKorea University Seoul 02841 Republic of Korea
| | - Jyotirling R. Mali
- College of PharmacyDongguk University-Seoul Goyang 10326 Republic of Korea
| | - Hyejun Park
- School of Life Sciences and BiotechnologyKorea University Seoul 02841 Republic of Korea
| | - Jae Kyun Lee
- Center for Neuromedicine, Korea Institute of Science and Technology Seoul 02792 Republic of Korea
| | - Kiho Lee
- College of PharmacyKorea University Sejong-ro 2511 Republic of Korea
| | - Kyeong Lee
- College of PharmacyDongguk University-Seoul Goyang 10326 Republic of Korea
| | - Yongseok Choi
- School of Life Sciences and BiotechnologyKorea University Seoul 02841 Republic of Korea
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Harmalkar DS, Mali JR, Sivaraman A, Choi Y, Lee K. Schweinfurthins A–Q: isolation, synthesis, and biochemical properties. RSC Adv 2018; 8:21191-21209. [PMID: 35539907 PMCID: PMC9080957 DOI: 10.1039/c8ra02872a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Accepted: 05/21/2018] [Indexed: 02/04/2023] Open
Abstract
Stilbene analogues have shown remarkable structural diversity constituting simple or tangled structures, which have attracted the synthetic as well as the medicinal chemistry communities. Schweinfurthins are a family of prenylated/geranylated/farnesylated stilbenes that are isolated from an African plant belonging to the Macaranga species. These compounds have displayed potency towards central nervous system, renal and breast cancer cell lines. Specifically, these compounds have been found to be potent and selective inhibitors of cell growth in the National Cancer Institute's 60 cell-line screen. In this review article, we described the isolation, synthesis, and biochemical properties of schweinfurthins. An overview of the isolation, synthesis, and biochemical properties of the stilbene-based natural products schweinfurthins A–Q (1999–2017).![]()
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Affiliation(s)
| | | | - Aneesh Sivaraman
- College of Pharmacy
- Dongguk University-Seoul
- Goyang
- Republic of Korea
| | - Yongseok Choi
- Department of Biotechnology
- Korea University
- Seoul
- Republic of Korea
| | - Kyeong Lee
- College of Pharmacy
- Dongguk University-Seoul
- Goyang
- Republic of Korea
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Bhosle MR, Khillare LD, Mali JR, Sarkate AP, Lokwani DK, Tiwari SV. DIPEAc promoted one-pot synthesis of dihydropyrido[2,3-d:6,5-d′]dipyrimidinetetraone and pyrimido[4,5-d]pyrimidine derivatives as potent tyrosinase inhibitors and anticancer agents: in vitro screening, molecular docking and ADMET predictions. NEW J CHEM 2018. [DOI: 10.1039/c8nj04622k] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Efficient and rapid synthesis of 18 tyrosinase inhibitors with good to moderate anticancer activity and good oral drug like properties.
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Affiliation(s)
- Manisha R. Bhosle
- Department of Chemistry
- Dr Babasaheb Ambedkar Marathwada University
- Aurangabad 431004
- India
| | - Lalit D. Khillare
- Department of Chemistry
- Dr Babasaheb Ambedkar Marathwada University
- Aurangabad 431004
- India
| | - Jyotirling R. Mali
- College of Pharmacy
- Dongguk University-Seoul
- Goyang-10326
- Republic of Korea
| | - Aniket P. Sarkate
- Department of Chemical Technology
- Dr Babasaheb Ambedkar Marathwada University
- Aurangabad-431004
- India
| | - Deepak K. Lokwani
- R. C. Patel Institute of Pharmaceutical Education & Research
- Shirpur-425405
- India
| | - Shailee V. Tiwari
- Department of Pharmaceutical Chemistry
- Durgamata Institute of Pharmacy
- Parbhani-431401
- India
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Bhosle MR, Mali JR, Mulay AA, Mane RA. Polyethylene glycol mediated one-pot three-component synthesis of new 4-thiazolidinones. Heteroatom Chem 2011. [DOI: 10.1002/hc.20766] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Jawale DV, Pratap UR, Mali JR, Mane RA. Silica chloride catalyzed one-pot synthesis of fully substituted pyrazoles. CHINESE CHEM LETT 2011. [DOI: 10.1016/j.cclet.2011.05.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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