Allosteric modulators of solute carrier function: a theoretical framework

Large-scale drug screening is currently the basis for the identification of new chemical entities. This is a rather laborious approach, because a large number of compounds must be tested to cover the chemical space in an unbiased fashion. However, the structures of targetable proteins have become increasingly available. Thus, a new era has arguably been ushered in with the advent of methods, which allow for structure-based docking campaigns (i.e., virtual screens). Solute carriers (SLCs) are among the most promising drug targets. This claim is substantiated by the fact that a large fraction of the 400 solute carrier genes is associated with human diseases. The ability to dock large ligand libraries into selected structures of solute carriers has set the stage for rational drug design. In the present study, we show that these structure-based approaches can be refined by taking into account how solute carriers operate. We specifically address the feasibility of targeting solute carriers with allosteric modulators, because their actions differ fundamentally from those of ligands, which bind to the substrate binding site. For the pertinent analysis we used transition state theory in conjunction with the linear free energy relationship (LFER). These provide the theoretical framework to understand how allosteric modulators affect solute carrier function.

The conservative view: is it necessary to implant a stent into the dopamine transporter?

This article is a reply to De Felice LJ and Cameron KN (2015). Comments on ‘A quantitative model of amphetamine action on the serotonin transporter’, by Sandtner et al., Br J Pharmacol 171: 1007–1018. Br J Pharmacol 172: this issue, doi: 10.1111/bph.12767, commenting on Sandtner W, Schmid D, Schicker K, Gerstbrein K, Koenig X, Mayer FP, Boehm S, Freissmuth M and Sitte HH (2014). A quantitative model of amphetamine action on the 5-HT transporter. Br J Pharmacol 171: 1007–1018. doi: 10.1111/bph.12520

Color-changing and color-tunable photonic bandgap fiber textiles

We present the fabrication and use of plastic Photonic Band Gap Bragg fibers in photonic textiles for applications in interactive cloths, sensing fabrics, signage and art. In their cross section Bragg fibers feature periodic sequence of layers of two distinct plastics. Under ambient illumination the fibers appear colored due to optical interference in their microstructure. Importantly, no dyes or colorants are used in fabrication of such fibers, thus making the fibers resistant to color fading. Additionally, Bragg fibers guide light in the low refractive index core by photonic bandgap effect, while uniformly emitting a portion of guided color without the need of mechanical perturbations such as surface corrugation or microbending, thus making such fibers mechanically superior to the standard light emitting fibers. Intensity of side emission is controlled by varying the number of layers in a Bragg reflector. Under white light illumination, emitted color is very stable over time as it is defined by the fiber geometry rather than by spectral content of the light source. Moreover, Bragg fibers can be designed to reflect one color when side illuminated, and to emit another color while transmitting the light. By controlling the relative intensities of the ambient and guided light the overall fiber color can be varied, thus enabling passive color changing textiles. Additionally, by stretching a PBG Bragg fiber, its guided and reflected colors change proportionally to the amount of stretching, thus enabling visually interactive and sensing textiles responsive to the mechanical influence. Finally, we argue that plastic Bragg fibers offer economical solution demanded by textile applications.