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Steinmann A, Alvarez P, Lee H, Court L. MRIgRT head and neck anthropomorphic QA phantom: Design, development, reproducibility, and feasibility study. Med Phys 2020; 47:604-613. [PMID: 31808949 PMCID: PMC7796776 DOI: 10.1002/mp.13951] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Revised: 10/21/2019] [Accepted: 10/22/2019] [Indexed: 12/29/2022] Open
Abstract
PURPOSE The purpose of this paper was to design, manufacture, and evaluate a tissue equivalent, dual magnetic resonance/computed tomography (MR/CT) visible anthropomorphic head and neck (H&N) phantom. This phantom was specially designed as an end-to-end quality assurance (QA) tool for MR imaging guided radiotherapy (MRIgRT) systems participating in NCI-sponsored clinical trials. METHOD The MRIgRT H&N phantom was constructed using a water-fillable acrylic shell and a custom insert that mimics an organ at risk (OAR) and target structures. The insert consists of a primary and secondary planning target volume (PTV) manufactured of a synthetic Clear Ballistic gel, an acrylic OAR and surrounding tissue fabricated using melted Superflab. Radiochromic EBT3 film and thermoluminescent detectors (TLDs) were used to measure the dose distribution and absolute dose, respectively. The phantom was evaluated by conducting an end-to-end test that included: imaging on a GE Lightspeed CT simulator, planning on Monaco treatment planning software (TPS), verifying treatment setup with MR, and irradiating on Elekta's 1.5 T Unity MR linac system. The phantom was irradiated three times using the same plan to determine reproducibility. Three institutions, equipped with either ViewRay MRIdian 60 Co or ViewRay MRIdian Linac, were used to conduct a feasibility study by performing independent end-to-end studies. Thermoluminescent detectors were evaluated in both reproducibility and feasibility studies by comparing ratios of measured TLD to reported TPS calculated values. Radiochromic film was used to compare measured planar dose distributions to expected TPS distributions. Film was evaluated by using an in-house gamma analysis software to measure the discrepancies between film and TPS. RESULTS The MRIgRT H&N phantom on the Unity system resulted in reproducible TLD doses (SD < 1.5%). The measured TLD to calculated dose ratios for the Unity system ranged from 0.94 to 0.98. The Viewray dose result comparisons had a larger range (0.95-1.03) but these depended on the TPS dose calculations from each site. Using a 7%/4 mm gamma analysis, Viewray institutions had average axial and sagittal passing rates of 97.3% and 96.2% and the Unity system had average passing rates of 97.8% and 89.7%, respectively. All of the results were within the Imaging and Radiation Oncology Core in Houston (IROC-Houston) standard credentialing criteria of 7% on TLDs, and >85% of pixels passing gamma analysis using 7%/4 mm on films. CONCLUSIONS An MRIgRT H&N phantom that is tissue equivalent and visible on both CT and MR was developed. The results from initial reproducibility and feasibility testing of the MRIgRT H&N phantom using the tested MGIgRT systems suggests the phantom's potential utility as a credentialing tool for NCI-clinical trials.
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Affiliation(s)
- A. Steinmann
- Department of Radiation Physics, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA
| | - P. Alvarez
- Department of Radiation Physics, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA
| | - H. Lee
- Department of Radiation Physics, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA
| | - L. Court
- Department of Radiation Physics, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA
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Dosanjh M, Aggarwal A, Pistenmaa D, Amankwaa-Frempong E, Angal-Kalinin D, Boogert S, Brown D, Carlone M, Collier P, Court L, Di Meglio A, Van Dyk J, Grover S, Jaffray D, Jamieson C, Khader J, Konoplev I, Makwani H, McIntosh P, Militsyn B, Palta J, Sheehy S, Aruah S, Syratchev I, Zubizarreta E, Coleman C. Developing Innovative, Robust and Affordable Medical Linear Accelerators for Challenging Environments. Clin Oncol (R Coll Radiol) 2019; 31:352-355. [DOI: 10.1016/j.clon.2019.02.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Revised: 12/08/2018] [Accepted: 01/15/2019] [Indexed: 12/21/2022]
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Steinmann A, O'Brien D, Stafford R, Sawakuchi G, Wen Z, Court L, Fuller C, Followill D. Investigation of TLD and EBT3 performance under the presence of 1.5T, 0.35T, and 0T magnetic field strengths in MR/CT visible materials. Med Phys 2019; 46:3217-3226. [PMID: 30950071 DOI: 10.1002/mp.13527] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Revised: 12/17/2018] [Accepted: 12/17/2018] [Indexed: 11/09/2022] Open
Abstract
PURPOSE The aim of this study was to investigate thermoluminescent dosimeters (TLD) and radiochromic EBT3 film inside MR/CT visible geometric head and thorax phantoms in the presence of: 0, 0.35, and 1.5 T magnetic fields. METHODS Thermoluminescent Dosimeters reproducibility studies were examined by irradiating IROC-Houston's TLD acrylic block five times under 0 and 1.5 T configurations of Elekta's Unity system and three times under 0 and 0.35 T configurations of ViewRay's MRIdian Cobalt-60 (60 Co) system. Both systems were irradiated with an equivalent 10 × 10 cm2 field size, and a prescribed dose of 3 Gy to the maximum depth deposition (dmax). EBT3 film and TLDs were investigated using two geometrical Magnetic Resonance (MR)-guided Radiation Therapy (MRgRT) head and thorax phantoms. Each geometrical phantom had eight quadrants that combined to create a centrally located rectangular tumor (3 × 3 × 5 cm3 ) surrounded by tissue to form a 15 × 15 × 15 cm3 cubic phantom. Liquid polyvinyl chloride plastic and Superflab were used to simulate the tumor and surrounding tissue in the head phantom, respectively. Synthetic ballistic gel and a heterogeneous in-house mixture were used to construct the tumor and surrounding tissue in the thorax phantom, respectively. EBT3 and double-loaded TLDs were used in the phantoms to compare beam profiles and point dose measurements with and without magnetic fields. GEANT4 Monte Carlo simulations were performed to validate the detectors for both Unity 0 T/1.5 T and MRIdian 0 T/0.35 T configurations. RESULTS Average TLD block measurements which, compared the magnetic field effects (magnetic field vs 0 T) on the Unity and MRIdian systems, were 0.5% and 0.6%, respectively. The average ratios between magnetic field effects for the geometric thorax and head phantoms under the Unity system were -0.2% and 1.6% and for the MRIdian system were 0.2% and -0.3%, respectively. Beam profiles generated with both systems agreed with Monte Carlo measurements and previous literature findings. CONCLUSIONS TLDs and EBT3 film dosimeters could potentially be used in MR/CT visible tissue equivalent phantoms that will experience a magnetic field environment.
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Affiliation(s)
- A Steinmann
- Department of Radiation Physics, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 77030, USA
| | - D O'Brien
- Department of Radiation Physics, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 77030, USA
| | - R Stafford
- Department of Imaging Physics, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 77030, USA
| | - G Sawakuchi
- Department of Radiation Physics, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 77030, USA
| | - Z Wen
- Department of Radiation Physics, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 77030, USA
| | - L Court
- Department of Radiation Physics, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 77030, USA
| | - C Fuller
- Department of Radiation Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 770304, USA
| | - D Followill
- Department of Radiation Physics, The University of Texas M.D. Anderson Cancer Center, Houston, TX, 77030, USA
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Elhalawani H, Mohamed A, Kanwar A, Dursteler A, Rock C, Eraj S, Meheissen M, Volpe S, Yang P, Granberry R, Ger R, Fave X, Zhang L, Yang J, Marai G, Vock D, Canahuate G, Mackin D, Court L, Gunn G, Rao A, Fuller C. EP-2121: Serial Parotid Gland Radiomic-based Model Predicts Post-Radiation Xerostomia in Oropharyngeal Cancer. Radiother Oncol 2018. [DOI: 10.1016/s0167-8140(18)32430-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Balter P, Netherton T, Li Y, Nitsch P, Gao S, Muruganandham M, Shaitelman S, Frank S, Hahn S, Klopp A, Court L. PO-0921: Dose considerations of IGRT using MV projection and MV CBCT on a prototype linear accelerator. Radiother Oncol 2017. [DOI: 10.1016/s0167-8140(17)31358-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Nitsch P, Li Y, Netherton T, Balter P, Gao S, Muruganandham M, Shaitelman S, Frank S, Hahn S, Klopp A, Court L. EP-1571: Radiotherapy treatments using a prototype MLC design. Radiother Oncol 2017. [DOI: 10.1016/s0167-8140(17)32006-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Court L, McCarroll R, Kisling K, Zhang L, Yang J, Simonds H, Du Toit M, Mejia M, Jhingran A, Balter P, Beadle B. PO-0820: Full automation of radiation therapy treatment planning. Radiother Oncol 2017. [DOI: 10.1016/s0167-8140(17)31257-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Court L. O58. Illustrated instructions for training of physics QA. Phys Med 2016. [DOI: 10.1016/j.ejmp.2016.07.066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Court L, McCarroll R, Kisling K, Zhang L, Yang J, Jhingran A, Balter P, Simonds H, du Toit M, Mejia M, Beadle B. O20. Full automation of radiation therapy treatment planning. Phys Med 2016. [DOI: 10.1016/j.ejmp.2016.07.028] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Luo Y, Liao Z, Jiang W, Gomez D, Williamson R, Court L, Yang J. TU-H-CAMPUS-JeP2-05: Can Automatic Delineation of Cardiac Substructures On Noncontrast CT Be Used for Cardiac Toxicity Analysis? Med Phys 2016. [DOI: 10.1118/1.4957688] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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McCarroll R, Beadle B, Yang J, Zhang L, Mejia M, Kisling K, Balter P, Stingo F, Nelson C, Followill D, Court L. TU-H-CAMPUS-JeP1-02: Fully Automatic Verification of Automatically Contoured Normal Tissues in the Head and Neck. Med Phys 2016. [DOI: 10.1118/1.4957670] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Fried D, Meier J, Mawlawi O, Zhou S, Ibbott G, Liao Z, Court L. MO-DE-207B-07: Assessment of Reproducibility Of FDG-PET-Based Radiomics Features Across Scanners Using Phantom Imaging. Med Phys 2016. [DOI: 10.1118/1.4957256] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Kisling K, Zhang L, Yang J, Jhingran A, Balter P, McCarroll R, Beadle B, Howell R, Schmeler K, Court L. SU-F-T-423: Automating Treatment Planning for Cervical Cancer in Low- and Middle- Income Countries. Med Phys 2016. [DOI: 10.1118/1.4956608] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Court L. MO-B-207B-01: Harmonization & Robustness in Radiomics. Med Phys 2016. [DOI: 10.1118/1.4957190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Yang J, Wang X, Zhao Z, Yang J, Zhang Y, Court L, Li J, Brown P, Ghia A. SU-F-J-128: Dosimetric Impact of Esophagus Motion in Spine Stereotactic Body Radiotherapy. Med Phys 2016. [DOI: 10.1118/1.4956036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Shafiq ul Hassan M, Zhang G, Latifi K, Oliver J, Hunt D, Guzman R, Balagurunathan Y, Mackin D, Court L, Gillies R, Moros E. MO-DE-207B-04: Impact of Reconstruction Field of View On Radiomics Features in Computed Tomography (CT) Using a Texture Phantom. Med Phys 2016. [DOI: 10.1118/1.4957253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Rubinstein A, Kingsley C, Melancon A, Tailor R, Pollard J, Guindani M, Followill D, Hazle J, Court L. TU-H-CAMPUS-TeP2-01: A Comparison of Noninvasive Techniques to Assess Radiation-Induced Lung Damage in Mice. Med Phys 2016. [DOI: 10.1118/1.4957689] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Ingram W, Yang J, Beadle B, Wendt R, Rao A, Court L. TU-AB-202-12: A Novel Method to Map Endoscopic Video to CT for Treatment Planning and Toxicity Analysis in Radiation Therapy. Med Phys 2016. [DOI: 10.1118/1.4957434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Mackin D, Court L, Ng C, Yang J, Zhang L, Fave X. SU-F-R-09: Homogenization of CT Images for Radiomics Studies: It's Like Butter(worth). Med Phys 2016. [DOI: 10.1118/1.4955781] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Brown D, Court L, Hudson A, Odom A, Pipman Y. SU-F-P-02: A New Framework for the Equipment Donation Program. Med Phys 2016. [DOI: 10.1118/1.4955709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Cardenas C, Wong A, Mohamed A, Yang J, Court L, Rao A, Fuller C, Aristophanous M. SU-C-BRA-05: Delineating High-Dose Clinical Target Volumes for Head and Neck Tumors Using Machine Learning Algorithms. Med Phys 2016. [DOI: 10.1118/1.4955566] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Ger R, Awan M, Mohamed A, Ding Y, Frank S, Howell R, Li H, Liu H, Mohan R, Schellingerhout D, Stafford R, Wang J, Fuller C, Court L. WE-FG-202-12: Investigation of Longitudinal Salivary Gland DCE-MRI Changes. Med Phys 2016. [DOI: 10.1118/1.4957924] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Rubinstein A, Tailor R, Melancon A, Pollard J, Guindani M, Followill D, Hazle J, Court L. TH-CD-BRA-01: BEST IN PHYSICS (THERAPY): -Field-Induced Dose Effects in a Mouse Lung Phantom: Monte Carlo and Experimental Assessments. Med Phys 2016. [DOI: 10.1118/1.4958143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Lee J, Aristophanous M, Akhtari M, Milgrom S, Bouthaina D, Pinnix C, Narang S, Rao A, Court L, Smith G. SU-F-R-14: PET Based Radiomics to Predict Outcomes in Patients with Hodgkin Lymphoma. Med Phys 2016. [DOI: 10.1118/1.4955786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Court L. WE-FG-201-02: Automated Treatment Planning for Low-Resource Settings. Med Phys 2016. [DOI: 10.1118/1.4957894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Zhang Z, Ho A, Wang X, Brown P, Guha-Thakurta N, Ferguson S, Fave X, Zhang L, Mackin D, Court L, Li J, Yang J. TU-D-207B-01: A Prediction Model for Distinguishing Radiation Necrosis From Tumor Progression After Gamma Knife Radiosurgery Based On Radiomics Features From MR Images. Med Phys 2016. [DOI: 10.1118/1.4957509] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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McCarroll R, Beadle B, Fullen D, Balter P, Followill D, Stingo F, Yang J, Court L. TU-H-CAMPUS-TeP1-02: Seated Treatment: Setup Uncertainty Comparable to Supine. Med Phys 2016. [DOI: 10.1118/1.4957675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Court L, Brown D, Wang H, Maddox B, Aten D, MacGregor H, Chi P, Yock A, Gao S, Aristophanous M, Balter P. SU-F-E-18: Training Monthly QA of Medical Accelerators: Illustrated Instructions for Self-Learning. Med Phys 2016. [DOI: 10.1118/1.4955704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Fave X, Zhang L, Yang J, Mackin D, Stingo F, Followill D, Balter P, Jones A, Gomez D, Court L. TU-D-207B-02: Delta-Radiomics: The Prognostic Value of Therapy-Induced Changes in Radiomics Features for Stage III Non-Small Cell Lung Cancer Patients. Med Phys 2016. [DOI: 10.1118/1.4957510] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Fried D, Zhang L, Fave X, Ibbott G, Zhou S, Mawlawi O, Liao Z, Court L. MO-DE-207B-10: Impact of Morphologic Characteristics On Radiomics Features From Contast-Enhanced CT for Primary Lung Tumors. Med Phys 2016. [DOI: 10.1118/1.4957259] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Faught JT, Balter P, Johnson J, Kry S, Court L, Stingo F, Followill D. SU-E-T-179: Clinical Impact of IMRT Failure Modes at Or Near TG-142 Tolerance Criteria Levels. Med Phys 2015. [DOI: 10.1118/1.4924540] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Wang J, Yang J, Hwang K, Wen Z, Court L, Ibbott G. SU-E-J-227: Evaluation of Residual Geometric Distortion in MRI for Treatment Planning. Med Phys 2015. [DOI: 10.1118/1.4924313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Zhang L, Fried D, Fave X, Mackin D, Yang J, Court L. SU-E-J-261: The Importance of Appropriate Image Preprocessing to Augment the Information of Radiomics Image Features. Med Phys 2015. [DOI: 10.1118/1.4924347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Yang J, Balter P, Court L. TU-AB-303-07: Evaluation of Automatic Segmentation of Critical Structures for Head-And-Neck and Thoracic Radiotherapy Planning. Med Phys 2015. [DOI: 10.1118/1.4925524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Wang J, Yang J, Marshall S, Wen Z, Court L, Ibbott G. SU-E-J-205: Dose Distribution Differences Caused by System Related Geometric Distortion in MRI-Guided Radiation Treatment System. Med Phys 2015. [DOI: 10.1118/1.4924291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Zhou R, Yang J, Pan T, Milgrom S, Pinnix C, Shi A, Yang J, Liu Y, Nguyen Q, Gomez D, Dabaja B, Balter P, Court L, Liao Z. SU-E-J-129: Atlas Development for Cardiac Automatic Contouring Using Multi-Atlas Segmentation. Med Phys 2015. [DOI: 10.1118/1.4924215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Yang J, Zhang L, Zhang Y, Dong L, Balter P, Court L. SU-E-J-108: Solving the Chinese Postman Problem for Effective Contour Deformation. Med Phys 2015. [DOI: 10.1118/1.4924195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Krafft S, Briere T, Court L, Martel M. TU-CD-BRB-01: Normal Lung CT Texture Features Improve Predictive Models for Radiation Pneumonitis. Med Phys 2015. [DOI: 10.1118/1.4925586] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Aristophanous M, Court L. TU-F-CAMPUS-J-04: Setup Uncertainties in the Mediastinum Area for IMRT Treatment of Lymphoma Patients. Med Phys 2015. [DOI: 10.1118/1.4925794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Fave X, Fried D, Zhang L, Yang J, Balter P, Followill D, Gomez D, Jones A, Stingo F, Court L. SU-D-BRA-07: A Phantom Study to Assess the Variability in Radiomics Features Extracted From Cone-Beam CT Images. Med Phys 2015. [DOI: 10.1118/1.4923887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Mackin D, Zhang L, Fave X, Fried D, Yang J, Taylor B, Rodriguez-Rivera E, Dodge C, Jones A, Court L. SU-D-BRA-05: Toward Understanding the Robustness of Radiomics Features in CT. Med Phys 2015. [DOI: 10.1118/1.4923885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Niedzielski J, Yang J, Stingo F, Krafft S, Martel M, Briere T, Mohan R, Court L. MO-AB-BRA-01: A Novel Method to Objectively Quantify Normal Tissue Toxicity in the Esophagus. Med Phys 2015. [DOI: 10.1118/1.4925271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Ingram W, Yang J, Beadle B, Rao A, Wendt R, Court L. WE-AB-BRA-12: Virtual Endoscope Tracking for Endoscopy-CT Image Registration. Med Phys 2015. [DOI: 10.1118/1.4925865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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McInnis M, Taylor P, Poenisch F, Court L, Guindani M, Followill D. SU-E-T-772: Uncertainties in Treatment Planning for IROC-Houston Proton Phantom QA Program Due to Variable CT Technique and Proton Energy. Med Phys 2015. [DOI: 10.1118/1.4925136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Fave X, Fried D, Zhang L, Yang J, Balter P, Followill D, Gomez D, Jones A, Stingo F, Court L. SU-E-J-242: Volume-Dependence of Quantitative Imaging Features From CT and CE-CT Images of NSCLC. Med Phys 2015. [DOI: 10.1118/1.4924328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Kisling K, Court L, Kirsner S, Nelson C. SU-E-T-276: Dose Calculation Accuracy with a Standard Beam Model for Extended SSD Treatments. Med Phys 2015. [DOI: 10.1118/1.4924638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Sorensen J, Duran C, Stingo F, Wei W, Rao A, Zhang L, Court L, Erasmus J, Godoy M. SU-D-BRA-06: Dual-Energy Chest CT: The Effects of Virtual Monochromatic Reconstructions On Texture Analysis Features. Med Phys 2015. [DOI: 10.1118/1.4923886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Faught JT, Johnson J, Stingo F, Kry S, Court L, Balter P, Followill D. SU-E-T-105: An FMEA Survey of Intensity Modulated Radiation Therapy (IMRT) Step and Shoot Dose Delivery Failure Modes. Med Phys 2015. [DOI: 10.1118/1.4924466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Tay WT, Elfekih S, Court L, Gordon KH, De Barro PJ. Complete mitochondrial DNA genome of Bemisia tabaci cryptic pest species complex Asia I (Hemiptera: Aleyrodidae). Mitochondrial DNA A DNA Mapp Seq Anal 2014; 27:972-3. [PMID: 24960562 DOI: 10.3109/19401736.2014.926511] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The complete length of the Asia I member of the Bemisia tabaci species complex mitochondrial DNA genome (mitogenome) is 15,210 bp (GenBank accession no. KJ778614) with an A-T biased nucleotide composition (A: 32.7%; T: 42.4%; G: 14.0%; C: 10.8%). The mitogenome consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), 2 ribosomal RNA (rRNAs) and a 467 bp putative control region which also includes the A+T rich repeat region. All PCGs have an ATA (n = 8) or ATG (n = 5) start codon. Gene synteny of Asia I is overall similar to B. afer and two other members of the B. tabaci species complex Mediterranean and New World 1, and contains the tRNA-Ser2 located between the Cytb and ND1 genes found in Mediterranean and New World 1, but which is absent in B. afer. The orientation of the tRNA-Arg in Asia I is on the "plus" strand and differed from Mediterranean which is found on the "minus" strand. The Asia I mitogenome size is currently ranked the second smallest after B. afer (14,968 bp) followed by New World 1 (15,322 bp) and Mediterranean (15,632 bp).
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Affiliation(s)
- W T Tay
- a CSIRO Biosecurity Flagship, Black Mountain Laboratories , Canberra , Australia and
| | - S Elfekih
- a CSIRO Biosecurity Flagship, Black Mountain Laboratories , Canberra , Australia and
| | - L Court
- a CSIRO Biosecurity Flagship, Black Mountain Laboratories , Canberra , Australia and
| | - K H Gordon
- a CSIRO Biosecurity Flagship, Black Mountain Laboratories , Canberra , Australia and
| | - P J De Barro
- b CSIRO Ecosystem Sciences , Brisbane , Australia
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Ingram S, Yang J, Beadle B, Rao A, Wendt R, Castillo R, Court L. SU-C-18A-02: Image-Based Camera Tracking: Towards Registration of Endoscopic Video to CT. Med Phys 2014. [DOI: 10.1118/1.4887829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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