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Moure AL, Narula G, Sorrentino F, Bojang A, Tsui CKM, Sao Emani C, Porras-De Francisco E, Díaz B, Rebollo-López MJ, Torres-Gómez PA, López-Román EM, Camino I, Casado Castro P, Guijarro López L, Ortega F, Ballell L, Barros-Aguirre D, Remuiñán Blanco M, Av-Gay Y. MymA Bioactivated Thioalkylbenzoxazole Prodrug Family Active against Mycobacterium tuberculosis. J Med Chem 2020; 63:4732-4748. [DOI: 10.1021/acs.jmedchem.0c00003] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Abraham L. Moure
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | | | - Flavia Sorrentino
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | | | | | | | - Esther Porras-De Francisco
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Beatriz Díaz
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - María José Rebollo-López
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Pedro Alfonso Torres-Gómez
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Eva María López-Román
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Isabel Camino
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Patricia Casado Castro
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Laura Guijarro López
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Fátima Ortega
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Lluis Ballell
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - David Barros-Aguirre
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
| | - Modesto Remuiñán Blanco
- Diseases of the Developing World (DDW), Global Health Catalyst, GlaxoSmithKline, Severo Ochoa 2, 28760 Tres Cantos, Madrid, Spain
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López LG, Linares DH, Ramirez-Pastor AJ, Stariolo DA, Cannas SA. Critical behavior of self-assembled rigid rods on two-dimensional lattices: Bethe-Peierls approximation and Monte Carlo simulations. J Chem Phys 2013; 138:234706. [PMID: 23802975 DOI: 10.1063/1.4809987] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The critical behavior of adsorbed monomers that reversibly polymerize into linear chains with restricted orientations relative to the substrate has been studied. In the model considered here, which is known as self-assembled rigid rods (SARRs) model, the surface is represented by a two-dimensional lattice and a continuous orientational transition occurs as a function of temperature and coverage. The phase diagrams were obtained for the square, triangular, and honeycomb lattices by means of Monte Carlo simulations and finite-size scaling analysis. The numerical results were compared with Bethe-Peierls analytical predictions about the orientational transition for the square and triangular lattices. The analysis of the phase diagrams, along with the behavior of the critical average rod lengths, showed that the critical properties of the model do not depend on the structure of the lattice at low temperatures (coverage), revealing a quasi-one-dimensional behavior in this regime. Finally, the universality class of the SARRs model, which has been subject of controversy, has been revisited.
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Affiliation(s)
- L G López
- Departamento de Física, Instituto de Física Aplicada, Universidad Nacional de San Luis, CONICET, 5700 San Luis, Argentina
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Abstract
Monte Carlo (MC) simulations have been carried out to study the adsorption on square and triangular lattices of particles with two bonding sites that, by decreasing temperature or increasing density, polymerize reversibly into chains with a discrete number of allowed directions and, at the same time, undergo a continuous isotropic-nematic (IN) transition. The process has been monitored by following the behavior of the adsorption isotherms (chemical potential μ as a function of the surface coverage θ) for different values of lateral interaction energy/temperature. The numerical data were compared with mean-field analytical predictions and exact functions for noninteracting and 1D systems. The obtained results revealed the existence of three adsorption regimes in temperature. (1) At high temperatures, above the critical one characterizing the IN transition at full coverage T(c)(θ = 1), the particles are distributed at random on the surface and the adlayer behaves as a noninteracting 2D system. (2) At very low temperatures, the asymmetric monomers adsorb, forming chains over almost the entire range of coverage, and the adsorption process behaves as a 1D problem. (3) In the intermediate regime, the system exhibits a mixed regime and the filling of the lattice proceeds according to two different processes. In the first stage, the monomers adsorb isotropically on the lattice until the IN transition occurs in the system and, from this point, particles adsorb, forming chains so that the adlayer behaves as a 1D fluid. The two adsorption processes are present in the adsorption isotherms, and a marked singularity can be observed that separates both regimes. Thus, the adsorption isotherms appear as sensitive quantities with respect to the IN phase transition, allowing us (i) to reproduce the phase diagram of the system for square lattices and (ii) to obtain an accurate determination of the phase diagram for triangular lattices.
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Affiliation(s)
- L G López
- Departamento de Física, Instituto de Física Aplicada, Universidad Nacional de San Luis-CONICET, San Luis, Argentina
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López LG, Linares DH, Ramirez-Pastor AJ. Comment on "effect of polydispersity on the ordering transition of adsorbed self-assembled rigid rods". Phys Rev E Stat Nonlin Soft Matter Phys 2012; 85:053101-053102. [PMID: 23004806 DOI: 10.1103/physreve.85.053101] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2011] [Indexed: 06/01/2023]
Abstract
The critical behavior of self-assembled rigid rods on a square lattice was recently reinvestigated by Almarza et al. [Phys. Rev. E 82, 061117 (2010)]. Based on the Binder cumulants and the value of the critical exponent of the correlation length, the authors found that the isotropic-nematic phase transition occurring in the system is in the two-dimensional Ising universality class. This conclusion contrasts with that of a previous study [López et al., Phys. Rev. E 80, 040105(R) (2009)] which indicates that the transition at intermediate density belongs to the q=1 Potts universality class. Almarza et al. attributed the discrepancy to the use of the density as the control parameter by López et al. The present work shows that this suggestion is not sufficient, and that the discrepancy arises solely from the use of different statistical ensembles. Finally, the necessity of making corrections to the scaling functions in the canonical ensemble is discussed.
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Affiliation(s)
- L G López
- Departamento de Física, Instituto de Física Aplicada, Universidad Nacional de San Luis, CONICET, 5700 San Luis, Argentina.
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López LG, Linares DH, Ramirez-Pastor AJ. Critical exponents and universality for the isotropic-nematic phase transition in a system of self-assembled rigid rods on a lattice. Phys Rev E Stat Nonlin Soft Matter Phys 2009; 80:040105. [PMID: 19905261 DOI: 10.1103/physreve.80.040105] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2009] [Revised: 10/01/2009] [Indexed: 05/28/2023]
Abstract
Monte Carlo simulations have been carried out for a system of monomers on square lattices that, by decreasing temperature or increasing density, polymerize reversibly into chains with two allowed directions and, at the same time, undergo a continuous isotropic-nematic (IN) transition. The results show that the self-assembly process affects the nature of the transition. Thus, the calculation of the critical exponents and the behavior of Binder cumulants indicate that the universality class of the IN transition changes from two-dimensional Ising-type for monodisperse rods without self-assembly to q=1 Potts-type for self-assembled rods.
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Affiliation(s)
- L G López
- Departamento de Física, Instituto de Física Aplicada, CONICET, Universidad Nacional de San Luis, 5700 San Luis, Argentina
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