1
|
Stauffer EM, Bethlehem RAI, Dorfschmidt L, Won H, Warrier V, Bullmore ET. The genetic relationships between brain structure and schizophrenia. Nat Commun 2023; 14:7820. [PMID: 38016951 PMCID: PMC10684873 DOI: 10.1038/s41467-023-43567-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 11/14/2023] [Indexed: 11/30/2023] Open
Abstract
Genetic risks for schizophrenia are theoretically mediated by genetic effects on brain structure but it has been unclear which genes are associated with both schizophrenia and cortical phenotypes. We accessed genome-wide association studies (GWAS) of schizophrenia (N = 69,369 cases; 236,642 controls), and of three magnetic resonance imaging (MRI) metrics (surface area, cortical thickness, neurite density index) measured at 180 cortical areas (N = 36,843, UK Biobank). Using Hi-C-coupled MAGMA, 61 genes were significantly associated with both schizophrenia and one or more MRI metrics. Whole genome analysis with partial least squares demonstrated significant genetic covariation between schizophrenia and area or thickness of most cortical regions. Genetic similarity between cortical areas was strongly coupled to their phenotypic covariance, and genetic covariation between schizophrenia and brain phenotypes was strongest in the hubs of structural covariance networks. Pleiotropically associated genes were enriched for neurodevelopmental processes and positionally concentrated in chromosomes 3p21, 17q21 and 11p11. Mendelian randomization analysis indicated that genetically determined variation in a posterior cingulate cortical area could be causal for schizophrenia. Parallel analyses of GWAS on bipolar disorder, Alzheimer's disease and height showed that pleiotropic association with MRI metrics was stronger for schizophrenia compared to other disorders.
Collapse
Affiliation(s)
| | - Richard A I Bethlehem
- Department of Psychiatry, University of Cambridge, Cambridge, UK
- Department of Psychology, University of Cambridge, Cambridge, UK
| | - Lena Dorfschmidt
- Department of Psychiatry, University of Cambridge, Cambridge, UK
| | - Hyejung Won
- Department of Genetics and the Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Varun Warrier
- Department of Psychiatry, University of Cambridge, Cambridge, UK
- Department of Psychology, University of Cambridge, Cambridge, UK
| | - Edward T Bullmore
- Department of Psychiatry, University of Cambridge, Cambridge, UK
- Cambridgeshire & Peterborough NHS Foundation Trust, Cambridge, UK
| |
Collapse
|
2
|
Dorfschmidt L, Bethlehem RA, Seidlitz J, Váša F, White SR, Romero-García R, Kitzbichler MG, Aruldass AR, Morgan SE, Goodyer IM, Fonagy P, Jones PB, Dolan RJ, Harrison NA, Vértes PE, Bullmore ET. Sexually divergent development of depression-related brain networks during healthy human adolescence. Sci Adv 2022; 8:eabm7825. [PMID: 35622918 PMCID: PMC9140984 DOI: 10.1126/sciadv.abm7825] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 04/12/2022] [Indexed: 05/20/2023]
Abstract
Sexual differences in human brain development could be relevant to sex differences in the incidence of depression during adolescence. We tested for sex differences in parameters of normative brain network development using fMRI data on N = 298 healthy adolescents, aged 14 to 26 years, each scanned one to three times. Sexually divergent development of functional connectivity was located in the default mode network, limbic cortex, and subcortical nuclei. Females had a more "disruptive" pattern of development, where weak functional connectivity at age 14 became stronger during adolescence. This fMRI-derived map of sexually divergent brain network development was robustly colocated with i prior loci of reward-related brain activation ii a map of functional dysconnectivity in major depressive disorder (MDD), and iii an adult brain gene transcriptional pattern enriched for genes on the X chromosome, neurodevelopmental genes, and risk genes for MDD. We found normative sexual divergence in adolescent development of a cortico-subcortical brain functional network that is relevant to depression.
Collapse
Affiliation(s)
- Lena Dorfschmidt
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
| | | | - Jakob Seidlitz
- Department of Psychiatry, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Child and Adolescent Psychiatry and Behavioral Science, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, Children’s Hospital of Philadelphia and Penn Medicine, Philadelphia, PA 19104, USA
| | - František Váša
- Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London SE5 8AF, UK
| | - Simon R. White
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
| | | | | | - Athina R. Aruldass
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
| | - Sarah E. Morgan
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
- The Alan Turing Institute, London NW1 2DB, UK
- Department of Computer Science and Technology, University of Cambridge, Cambridge CB2 0SZ, UK
| | - Ian M. Goodyer
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
| | - Peter Fonagy
- Research Department of Clinical, Educational and Health Psychology, University College London, London WC1E 6BT, UK
| | - Peter B. Jones
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
- Cambridgeshire and Peterborough NHS Foundation Trust, Huntingdon PE29 3RJ, UK
| | - Ray J. Dolan
- Wellcome Trust Centre for Neuroimaging, University College London Queen Square Institute of Neurology
- Max Planck University College London Centre for Computational Psychiatry and Ageing Research, University College London, London WC1B 5EH, UK
| | | | - Neil A. Harrison
- Department of Neuroscience, Brighton and Sussex Medical School, University of Sussex Campus, Brighton BN1 9RY, UK
- Cardiff University Brain Research Imaging Centre, Cardiff University, Cardiff CF24 4HQ, UK
| | - Petra E. Vértes
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
| | - Edward T. Bullmore
- Department of Psychiatry, University of Cambridge, Cambridge CB2 0SZ, UK
| |
Collapse
|
3
|
Schueler K, Fritz J, Dorfschmidt L, van Harmelen AL, Stroemer E, Wessa M. Psychological Network Analysis of General Self-Efficacy in High vs. Low Resilient Functioning Healthy Adults. Front Psychiatry 2021; 12:736147. [PMID: 34867526 PMCID: PMC8635703 DOI: 10.3389/fpsyt.2021.736147] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/04/2021] [Accepted: 10/14/2021] [Indexed: 01/10/2023] Open
Abstract
Resilience to stress has gained increasing interest by researchers from the field of mental health and illness and some recent studies have investigated resilience from a network perspective. General self-efficacy constitutes an important resilience factor. High levels of self-efficacy have shown to promote resilience by serving as a stress buffer. However, little is known about the role of network connectivity of self-efficacy in the context of stress resilience. The present study aims at filling this gap by using psychological network analysis to study self-efficacy and resilience. Based on individual resilient functioning scores, we divided a sample of 875 mentally healthy adults into a high and low resilient functioning group. To compute these scores, we applied a novel approach based on Partial Least Squares Regression on self-reported stress and mental health measures. Separately for both groups, we then estimated regularized partial correlation networks of a ten-item self-efficacy questionnaire. We compared three different global connectivity measures-strength, expected influence, and shortest path length-as well as absolute levels of self-efficacy between the groups. Our results supported our hypothesis that stronger network connectivity of self-efficacy would be present in the highly resilient functioning group compared to the low resilient functioning group. In addition, the former showed higher absolute levels of general self-efficacy. Future research could consider using partial least squares regression to quantify resilient functioning to stress and to study the association between network connectivity and resilient functioning in other resilience factors.
Collapse
Affiliation(s)
- Katja Schueler
- Department of Clinical Psychology and Neuropsychology, Institute of Psychology, Johannes Gutenberg-University of Mainz, Mainz, Germany
- Medical Informatics Group, University Hospital of Frankfurt, Frankfurt, Germany
| | - Jessica Fritz
- Department of Psychiatry, University of Cambridge, Cambridge, United Kingdom
| | - Lena Dorfschmidt
- Department of Psychiatry, University of Cambridge, Cambridge, United Kingdom
| | | | - Eike Stroemer
- Leibniz Institute for Resilience Research Mainz, Mainz, Germany
| | - Michèle Wessa
- Department of Clinical Psychology and Neuropsychology, Institute of Psychology, Johannes Gutenberg-University of Mainz, Mainz, Germany
- Leibniz Institute for Resilience Research Mainz, Mainz, Germany
| |
Collapse
|
4
|
Walter H, Kausch A, Dorfschmidt L, Waller L, Chinichian N, Veer I, Hilbert K, Lüken U, Paulus MP, Goschke T, Kruschwitz JD. Self-control and interoception: Linking the neural substrates of craving regulation and the prediction of aversive interoceptive states induced by inspiratory breathing restriction. Neuroimage 2020; 215:116841. [DOI: 10.1016/j.neuroimage.2020.116841] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 03/31/2020] [Accepted: 04/07/2020] [Indexed: 12/28/2022] Open
|
5
|
Waller L, Brovkin A, Dorfschmidt L, Bzdok D, Walter H, Kruschwitz JD. GraphVar 2.0: A user-friendly toolbox for machine learning on functional connectivity measures. J Neurosci Methods 2018; 308:21-33. [PMID: 30026069 DOI: 10.1016/j.jneumeth.2018.07.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2018] [Revised: 06/30/2018] [Accepted: 07/01/2018] [Indexed: 01/06/2023]
Abstract
BACKGROUND We previously presented GraphVar as a user-friendly MATLAB toolbox for comprehensive graph analyses of functional brain connectivity. Here we introduce a comprehensive extension of the toolbox allowing users to seamlessly explore easily customizable decoding models across functional connectivity measures as well as additional features. NEW METHOD GraphVar 2.0 provides machine learning (ML) model construction, validation and exploration. Machine learning can be performed across any combination of graph measures and additional variables, allowing for a flexibility in neuroimaging applications. RESULTS In addition to previously integrated functionalities, such as network construction and graph-theoretical analyses of brain connectivity with a high-speed general linear model (GLM), users can now perform customizable ML across connectivity matrices, graph measures and additionally imported variables. The new extension also provides parametric and nonparametric testing of classifier and regressor performance, data export, figure generation and high quality export. COMPARISON WITH EXISTING METHODS Compared to other existing toolboxes, GraphVar 2.0 offers (1) comprehensive customization, (2) an all-in-one user friendly interface, (3) customizable model design and manual hyperparameter entry, (4) interactive results exploration and data export, (5) automated queue system for modelling multiple outcome variables within the same session, (6) an easy to follow introductory review. CONCLUSIONS GraphVar 2.0 allows comprehensive, user-friendly exploration of encoding (GLM) and decoding (ML) modelling approaches on functional connectivity measures making big data neuroscience readily accessible to a broader audience of neuroimaging investigators.
Collapse
Affiliation(s)
- L Waller
- Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Psychiatry and Psychotherapy, Division of Mind and Brain Research, Germany
| | - A Brovkin
- Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Psychiatry and Psychotherapy, Division of Mind and Brain Research, Germany; Collaborative Research Centre (SFB 940) "Volition and Cognitive Control", Technische Universität, Dresden, Germany
| | - L Dorfschmidt
- Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Psychiatry and Psychotherapy, Division of Mind and Brain Research, Germany; Collaborative Research Centre (SFB 940) "Volition and Cognitive Control", Technische Universität, Dresden, Germany
| | - D Bzdok
- Department of Psychiatry, Psychotherapy and Psychosomatics, RWTH, Aachen University, 52072 Aachen, Germany; JARA BRAIN, Jülich-Aachen Research Alliance, Germany; Parietal team, INRIA, Neurospin, bat 145, CEA Saclay, 91191, Gif-sur-Yvette, France
| | - H Walter
- Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Psychiatry and Psychotherapy, Division of Mind and Brain Research, Germany
| | - J D Kruschwitz
- Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Psychiatry and Psychotherapy, Division of Mind and Brain Research, Germany; Collaborative Research Centre (SFB 940) "Volition and Cognitive Control", Technische Universität, Dresden, Germany.
| |
Collapse
|