A unified approach for detection of induced epileptic seizures in rats using ECoG signals

OBJECTIVE

Epileptic seizure detection is a key step for epilepsy assessment. In this work, using the pentylenetetrazole (PTZ) model, seizures were induced in rats, and ECoG signals in interictal, preictal, ictal, and postictal periods were recorded. The recorded ECoG signals were then analyzed to detect epileptic seizures in the epileptic rats.

METHODS

Two different approaches were considered in this work: thresholding and classification. In the thresholding approach, a feature is calculated in consecutive windows, and the resulted index is tracked over time and compared with a threshold. The moment the index crosses the threshold is considered as the moment of seizure onset. In the classification approach, features are extracted from before, during, and after ictal periods and statistically analyzed. Statistical characteristics of some features have a significant difference among these periods, thus resulting in epileptic seizure detection.

RESULTS

Several features were examined in the thresholding approach. Nonlinear energy and coastline features were successful in epileptic seizure detection. The best result was achieved by the coastline feature, which led to a mean of a 2-second delay in its correct detections. In the classification approach, the best result was achieved using the fuzzy similarity index that led to Pvalue<0.001.

CONCLUSION

This study showed that variance-based features were more appropriate for tracking abrupt changes in ECoG signals. Therefore, these features perform better in seizure onset estimation, whereas nonlinear features or indices, which are based on dynamical systems, can better track the transition of neural system to ictal period.

SIGNIFICANCE

This paper presents examination of different features and indices for detection of induced epileptic seizures from rat's ECoG signals.

A model-based Bayesian framework for ECG beat segmentation

The study of electrocardiogram (ECG) waveform amplitudes, timings and patterns has been the subject of intense research, for it provides a deep insight into the diagnostic features of the heart's functionality. In some recent works, a Bayesian filtering paradigm has been proposed for denoising and compression of ECG signals. In this paper, it is shown that this framework may be effectively used for ECG beat segmentation and extraction of fiducial points. Analytic expressions for the determination of points and intervals are derived and evaluated on various real ECG signals. Simulation results show that the method can contribute to and enhance the clinical ECG beat segmentation performance.

Model-based Bayesian filtering of cardiac contaminants from biomedical recordings

Electrocardiogram (ECG) and magnetocardiogram (MCG) signals are among the most considerable sources of noise for other biomedical signals. In some recent works, a Bayesian filtering framework has been proposed for denoising the ECG signals. In this paper, it is shown that this framework may be effectively used for removing cardiac contaminants such as the ECG, MCG and ballistocardiographic artifacts from different biomedical recordings such as the electroencephalogram, electromyogram and also for canceling maternal cardiac signals from fetal ECG/MCG. The proposed method is evaluated on simulated and real signals.

Analysis of p300 classifiers in brain computer interface speller

In this paper, the performance of five classifiers in P300 speller paradigm are compared. Theses classifiers are Linear Support Vector Machine (LSVM), Gaussian Support Vector Machine (GSVM), Neural Network (NN), Fisher Linear Discriminant (FLD), and Kernel Fisher Discriminant (KFD). In classification of P300 waves, there has been a trend to use SVM classifiers. Although they have shown a good performance, in this paper, it is shown that the FLD classifiers outperform the SVM classifiers. FLD classifier uses only ten channels of the recorded electroencephalogram (EEG) signals. This makes them a very good candidate for real-time applications. In addition, FLD approach does not need any optimization similar to other methods. In addition, in this paper, it is shown that the efficiency of using Principal Component Analysis (PCA) for feature reduction results in decreasing the time for the classification and increasing the accuracy.

Assessment of preprocessing on classifiers used in the p300 speller paradigm

Artifact removal is an essential part in electroencephalogram (EEG) recording and the raw EEG signals require preprocessing before feature extraction. In this work, we implemented three filtering methods and demonstrated their effects on the performance of different classifiers. Bandpass digital filtering, median filtering and facet method are three preprocessing approaches investigated in this paper. We used data set lib from the BCI competition 2003 for training and testing phase. Our accuracy varied between 80% and 96%. In our work, we demonstrated that the problems of choosing the classifier and preprocessing methods are not independent of each other. Two of our approaches could achieve the 96% accuracy i.e. 31 of 32 characters were predicted correctly. These two approaches have different classifier and different preprocessing method. It means that the performance of each classifier can be enhanced with a specific preprocessing method. In our approach, we used only three electrodes of 64 applied electrodes. Therefore it can noticeably reduce the time and cost of EEG measurement.

Brain activity modeling in general anesthesia: enhancing local mean-field models using a slow adaptive firing rate

In this paper, an enhanced local mean-field model that is suitable for simulating the electroencephalogram (EEG) in different depths of anesthesia is presented. The main building elements of the model (e.g., excitatory and inhibitory populations) are taken from Steyn-Ross [M. L. Steyn-Ross, Phys. Rev. E 64, 011917 (2001), D. A. Steyn-Ross, Phys. Rev. E 64, 011918 (2001)] and Bojak and Liley [I. Bojak and D. T. Liley, Phys. Rev. E 71, 041902 (2005)] mean-field models and a new slow ionic mechanism is included in the main model. Generally, in mean-field models, some sigmoid-shape functions determine firing rates of neural populations according to their mean membrane potentials. In the enhanced model, the sigmoid function corresponding to excitatory population is redefined to be also a function of the slow ionic mechanism. This modification adapts the firing rate of neural populations to slow ionic activities of the brain. When an anesthetic drug is administered, the slow mechanism may induce neural cells to alternate between two levels of activity referred to as up and down states. Basically, the frequency of up-down switching is in the delta band (0-4 Hz) and this is the main reason behind high amplitude, low frequency fluctuations of EEG signals in anesthesia. Our analyses show that the enhanced model may have different working states driven by anesthetic drug concentration. The model is settled in the up state in the waking period, it may switch to up and down states in moderate anesthesia while in deep anesthesia it remains in the down state.

Filtering electrocardiogram signals using the extended Kalman filter

In this paper the Extended Kalman Filter (EKF) has been used for the filtering of Electrocardiogram (ECG) signals. The method is based on a previously nonlinear dynamic model proposed for the generation of synthetic ECG signals. The results show that the EKF may be used as a powerful tool for the extraction of ECG signals from noisy measurements; which is the state of the art in applications such as the noninvasive extraction of fetal cardiac signals from maternal abdominal signals.

Wigner-Ville distribution and Gabor transform in Doppler ultrasound signal processing

Time-frequency distributions have been used extensively for nonstationary signal analysis, they describe how the frequency content of a signal is changing in time. The Wigner-Ville distribution (WVD) is the best known. The draw back of WVD is cross-term artifacts. An alternative to the WVD is Gabor transform (GT), a signal decomposition method, which displays the time-frequency energy of a signal on a joint t-f plane without generating considerable cross-terms. In this paper the WVD and GT of ultrasound echo signals are computed analytically.

Using the discrete Gabor expansion for the Doppler ultrasound signal processing

In this paper we have synthesized the Doppler signal with a known time varying mean frequency, then used the orthogonal-like Discrete Gabor Transform (DGT) and the spectrogram for analyzing the signal. Mean square error has been computed for each method respectively and at last we have analyzed the real clinical signal too.

Time-frequency matching of warped depth-EEG seizure observations

A methodology of comparing depth-EEG seizure recordings is presented. The approach is based on an extension of Wagner and Fischer's algorithm to N x 2-dimensional sets, allowing a confrontation of nonequal duration observations characterized by their time-frequency distributions. It proceeds by time and frequency warping on the first observation to match the second, under cost constraints. Preliminary results show that relevant signatures can be extracted from recordings.