Microgeographic variation in recruitment under adult trees: arrival of new genotypes or perpetuation of the existing ones?

Investigating spatial variation in the relative importance of sexual reproduction and clonal propagation is critical to obtain more accurate estimates of future effective population sizes and genetic diversity, as well as to identify ecological correlates of clonality. We combined a stratified sampling scheme with microsatellite genetic analyses to estimate variation in the proportion of sexual versus clonal recruits among saplings in five populations of the tree Pyrus bourgaeana. Using a likelihood framework, we identified clones among the genotypes analysed and examined variation among populations regarding the proportion of saplings coming from clonal propagation. We also examined the relationship between the relative abundance of clonal shoots across the studied populations and their herbivory levels. Our results revealed that one third of the saplings examined (N = 225 saplings) had a probability above 0.9 of being clones of nearby (<10 m) trees, with the ratio between clonal propagation and sexual recruitment varying up to eight-fold among populations. A small portion of these putative clonal shoots reached sexual maturity. Relative abundance of clonal shoots did not significantly relate to the herbivory by ungulates. Our results call into question optimistic expectations of previous studies reporting sufficient levels of recruitment under parental trees without animal seed dispersal services. Nevertheless, given that some of these clonal shoots reach sexual maturity, clonal propagation can ultimately facilitate the long-term persistence of populations during adverse periods (e.g. environmental stress, impoverished pollinator communities, seed dispersal limitation).

Validation of loop-mediated isothermal amplification for fast and portable sex determination across the phylogeny of birds

PCR is a universal tool for the multiplication of specific DNA sequences. For example, PCR-based sex determination is widely used, and a diversity of primer sets is available. However, this protocol requires thermal cycling and electrophoresis, so results are typically obtained in laboratories and several days after sampling. Loop-mediated isothermal amplification (LAMP) is an alternative to PCR that can take molecular ecology outside the laboratory. Although its application has been successfully probed for sex determination in three species of a single avian Family (raptors, Accipitridae), its generality remains untested and suitable primers across taxa are lacking. We designed and tested the first LAMP-based primer set for sex determination across the modern birds (NEO-W) based on a fragment of the gene chromo-helicase-DNA-binding protein located on the female-specific W chromosome. As nucleotide identity is expected to increase among more related taxa, taxonomically targeted primers were also developed for the Order Falconiformes and Families Psittacidae, Ciconiidae, Estrildidae and Icteridae as examples. NEO-W successfully determined sex in a subset of 21 species within 17 Families and 10 Orders and is therefore a candidate primer for all modern birds. Primer sets designed specifically for the selected taxa correctly assigned sex to the evaluated species. A short troubleshooting guide for new LAMP users is provided to identify false negatives and optimize LAMP reactions. This study represents the crucial next step towards the use of LAMP for molecular sex determination in birds and other applications in molecular ecology.

Hydrological stability and otter trophic diversity: a scale-insensitive pattern?

Two recent works related Eurasian otter ( Lutra lutra (L., 1758)) trophic patterns over large areas with the stability of aquatic ecosystems. Higher levels of instability lead to reduced availability and (or) predictability of fish, and consequently, to a decrease in fish consumption by otters. The aim of the present study is to test these macrogeographical patterns in otter diet at regional and local scales. We analysed otter diet in Mediterranean streams in southwestern Iberian Peninsula where clear hydrological stability gradients (related to drainage area or distance to the sea) could be defined. Hydrological stability was directly related to fish consumption and inversely to otter diet diversity in terms of occurrence and biomass, both at regional and local scales. The level of stability of aquatic ecosystems appears to be a critical indirect factor that modulates otter diet through its effects on fish populations. The resulting trophic patterns are maintained from local to macrogeographical scales.

Antibodies to Mycobacterium bovis in wild carnivores from Doñana National Park (Spain)

We conducted a retrospective serologic survey for antibodies against the MPB70 protein of Mycobacterium bovis in wild carnivores from Doñana National Park (southwestern Spain). Serum samples from 118 red foxes (Vulpes vulpes), 39 Iberian lynx (Lynx pardinus), 31 Eurasian badgers (Meles meles), five Egyptian mongoose (Herpestes ichneumon), four European genet (Genetta genetta), and one Eurasian otter (Lutra lutra) were analyzed using an indirect competitive enzyme-linked immunoassay. Antibodies against the MPB70 protein of M. bovis were detected in seven badgers, five foxes, and one lynx. The frequency of positive animals was significantly higher in badger (23%) than in lynx (3%) and fox (4%). Antibodies were not detected in other species. Annual antibody frequency peaked at 38% in badgers and 11% for red fox. These species may contribute to persistence of bovine tuberculosis in Doñana.

Factores ambientales condicionantes de la presenciade la lagartija de Carbonell Podarcis carbonelli (Pérez-Mellado, 1981) en la comarca de Doñana

Environmental factors determining the presence of the Carbonell lizard Podarcis carbonelli (Pérez-Mellado, 1981) in the Doñana area The Carbonell lizard (Podarcis carbonelli) is an Iberian endemism. The region of Doñana is its southernmost and more isolated stronghold. We used logistic regressions to investigate the factors conditioning the presence of this lizard in Doñana. All selected models retained the distance to the coast as the main variable. This variable is related with less humidity and more continental climatic conditions, including more extreme temperatures, when further from the coast. This climatic factor was observed both spatially and temporarily, with adult lizards drastically reducing their activity both in winter and in summer. We observed juveniles from June to January, with a maximum in September. Scrubland management was another important environmental factor affecting the presence of lizards. The probability of finding this species was higher where the scrubland was partially cleared, and lower in areas with a high plant cover (hygrophytic scrubland) or in areas with sparse vegetation (dune scrubland), probably due to a lower amount of incident light and less protection when moving between refuges, respectively.

Phylogenetic and Phylogeographic Analysis of Iberian Lynx Populations

The Iberian lynx (Lynx pardinus), one of the world's most endangered cat species, is vulnerable due to habitat loss, increased fragmentation of populations, and precipitous demographic reductions. An understanding of Iberian lynx evolutionary history is necessary to develop rational management plans for the species. Our objectives were to assess Iberian lynx genetic diversity at three evolutionary timescales. First we analyzed mitochondrial DNA (mtDNA) sequence variation to position the Iberian lynx relative to other species of the genus LYNX: We then assessed the pattern of mtDNA variation of isolated populations across the Iberian Peninsula. Finally we estimated levels of gene flow between two of the most important remaining lynx populations (Doñana National Park and the Sierra Morena Mountains) and characterized the extent of microsatellite locus variation in these populations. Phylogenetic analyses of 1613 bp of mtDNA sequence variation supports the hypothesis that the Iberian lynx, Eurasian lynx, and Canadian lynx diverged within a short time period around 1.53-1.68 million years ago, and that the Iberian lynx and Eurasian lynx are sister taxa. Relative to most other felid species, genetic variation in mtDNA genes and nuclear microsatellites were reduced in Iberian lynx, suggesting that they experienced a fairly severe demographic bottleneck. In addition, the effects of more recent reductions in gene flow and population size are being manifested in local patterns of molecular genetic variation. These data, combined with recent studies modeling the viability of Iberian lynx populations, should provide greater urgency for the development and implementation of rational in situ and ex situ conservation plans.

Seasonal food habits of bobcats (Lynx rufus) in subtropical Baja California Sur, Mexico

The annual and seasonal diet of the bobcat (Lynx rufus) was determined from analysis of 188 feces in the Cape region of Baja California, Mexico, an arid zone with numerous subtropical elements in its flora and fauna. Bobcats fed mainly on lagomorphs, which reached 74% of occurrence, followed by rodents (40%), reptiles (15%), and birds (12%). No seasonal variations were observed. The results were consistent with those of studies elsewhere, indicating that bobcats still rely upon lagomorphs for much of their food in southern latitudes. This supports the hypothesis that lynx have evolved to prey on hares and rabbits. The prevalence of reptiles as prey of bobcats in our study area was the highest ever reported. They were reported as bobcat prey in only 1 of 20 studies from north of latitude 40°, but in 14 of the 18 studies carried out south of this latitude. With regard to feeding on reptiles, the habits of bobcats in Baja California Sur resemble those of other similar-sized felids in tropical areas, such as ocelots (Felis pardalis) and servals (Leptailurus serval).

Immobilization of free-ranging red foxes (Vulpes vulpes) with tiletamine hydrochloride and zolazepam hydrochloride

We evaluated Zoletil on free-ranging red foxes (Vulpes vulpes) in Spain. Twenty-two pup and 49 adult wild-caught red foxes (Vulpes vulpes) were immobilized with a combination of tiletamine hydrochloride and zolazepam hydrochloride in a 1:1 proportion (Zoletil). Mean (+/- SE) Zoletil doses were 10.57 (+/- 0.41) mg/kg (range = 7.58-15.39 mg/kg, n = 22) for pups and 10.51 (+/- 0.33) mg/kg (range = 5.88-16.67 mg/kg, n = 45) for adults. Mean induction and first recovery times for pups were 2.3 (+/- 0.2) minutes (range = 1 to 5 minutes) and 35.5 (+/- 3.28) minutes (range = 18 to 78 minutes), respectively. Mean induction and first recovery times for adults were 3.7 (+/- 0.21) minutes (range = 2 to 8 minutes) and 35.4 (+/- 2.22) minutes (range = 13 to 90 minutes), respectively. We recommend Zoletil doses of 10 mg/kg for red foxes. For wild adult red foxes of unknown weight, an initial dose of 60 to 70 mg Zoletil should be administered. This dose should allow about 40 minutes of handling time.

Immobilization of the endangered Iberian lynx with xylazine- and ketamine-hydrochloride

A combination of the dissociative anesthetic ketamine hydrochloride (KH) and the sedative xylazine hydrochloride (XH) was used to immobilize 31 wild Iberian lynx (Felis pardina) 45 times at Doñana National Park, Spain. A mean (+/- SE) dose of 4.6 (+/- 0.2) mg/kg KH and 4.0 (+/- 0.2) mg/kg XH resulted in mean (+/- SE) induction time of 5.6 (+/- 0.3) min and mean (+/- SE) first reaction time of 59.3 (+/- 6.5) min. Convulsions occurred four times (9%), but with no noteworthy consequences.

Xylazine hydrochloride-ketamine hydrochloride immobilization of free-living red foxes (Vulpes vulpes) in Spain

A combination of xylazine hydrochloride-ketamine hydrochloride was used to immobilize 83 wild red foxes (Vulpes vulpes) (15 pups and 68 adults) at Doñana National Park (Spain). Mean ketamine hydrochloride doses were 17.1 mg/kg (SE = 1.53) and 12.3 mg/kg (SE = 0.4) for pups and adults, respectively, and mean xylazine hydrochloride doses for the same groups were 6.2 mg/kg (SE = 0.63) and 4.7 mg/kg (SE = 0.14), respectively. Mean induction times and first reaction times were 1.6 minutes and 22.5 minutes for pups and 3.8 minutes and 39.4 minutes for adults, respectively. Recommended doses for wild adult foxes of unknown weight are 75 mg of ketamine hydrochloride and 20 mg of xylazine hydrochloride.

Hematological and serum chemical characteristics of the Iberian lynx (Lynx pardina) in southwestern Spain

Hematological and serum chemical values were determined for 16 wild Iberian lynxes, Lynx pardina (5 adult males, 4 adult females, 4 juvenile males, and 3 juvenile females) captured with box traps and coil-spring traps. The results include reference values, analysis of sex and age differences, and data on the influence of capture method on blood values. Males had higher red blood cell counts (p = 0.03) and packed cell volumes (p = 0.06) than females, which presented higher mean corpuscular hemoglobin levels (p = 0.08) and mean corpuscular hemoglobin concentrations (p = 0.07) than males. Juveniles had higher serum levels of alkaline phosphatase (p = 0.01), urea (p = 0.02), and cholesterol (p = 0.02) and lower levels of creatinine (p = 0.07) than adults. Four hematological variables (mean platelet volume, platelet size distribution, white blood cell count, and mean corpuscular volume) and two serum variables (concentrations of amylase and calcium) were influenced by capture method. The use of standard procedures to assess base-line blood values in wild carnivores is encouraged.