Genome sequence of white spot syndrome virus (WSSV) infecting cultured black tiger shrimp (Penaeus monodon) in Bangladesh

The white spot syndrome virus (WSSV) is a causative agent of white spot disease (WSD) in crustaceans, especially in cultivated black tiger shrimp (Penaeus monodon), leading to significant economic losses in the aquaculture sector. The present study describes four whole genome sequences of WSSV obtained from coastal regions of Bangladesh.

Microbiome pattern and diversity of an anadromous fish, hilsa shad (Tenualosa ilisha)

BACKGROUND

The host-microbe interactions are complex, dynamic and context-dependent. In this regard, migratory fish species like hilsa shad (Tenualosa ilisha), which migrates from seawater to freshwater for spawning, provides a unique system for investigating the microbiome under an additional change in fish's habitat. This work was undertaken to detect taxonomic variation of microbiome and their function in the migration of hilsa.

METHODS AND RESULTS

The study employed 16S rRNA amplicon-based metagenomic analysis to scrutinize bacterial diversity in hilsa gut, skin mucus and water. Thus, a total of 284 operational taxonomic units (OTUs), 9 phyla, 35 orders and 121 genera were identified in all samples. More than 60% of the identified bacteria were Proteobacteria with modest abundance (> 5%) of Firmicutes, Bacteroidetes and Actinobacteria. Leucobacter in gut and Serratia in skin mucus were the core bacterial genera, while Acinetobacter, Pseudomonas and Psychrobacter exhibited differential compositions in gut, skin mucus and water.

CONCLUSIONS

Representative fresh-, brackish- and seawater samples of hilsa habitats were primarily composed of Vibrio, Serratia and Psychrobacter, and their diversity in seawater was significantly higher (P < 0.05) than freshwater. Overall, salinity and water microbiota had an influence on the microbial composition of hilsa shad, contributing to host metabolism and adaptation processes. This pioneer exploration of hilsa gut and skin mucus bacteria across habitats will advance our insights into microbiome assembly in migratory fish populations.

Microplastic contamination in Penaeid shrimp from the Northern Bay of Bengal

Microplastic pollution has received increased attention recently due to potential threat to marine biota and human health. This study reports microplastic (MP) content in brown shrimp (Metapenaeus monocerous) and tiger shrimp (Penaeus monodon) inhabiting in the shallow and offshore waters of the Northern Bay of Bengal, Bangladesh. Gastrointestinal tract (GT) of shrimps (n = 150) were examined for MPs following alkali digestion, microscopic observation and chemical analysis by micro-Fourier Transformed Infrared Spectroscope (μFTIR). A total of 33 and 39 MP items were found in P. monodon and M. monocerous, averaging 3.40 ± 1.23 and 3.87 ± 1.05 items/g GT, respectively. Among various shapes, types and colours of MP, filament (57-58%), fiber (32-57%) and black (48-51%) were dominant amongst the various particles identified. Tiger shrimp had high numbers (23 items) of larger size fractions of MPs (1-5 mm) but brown shrimp had high numbers (15 items) of smaller MPs (250-500 μm), and μ-FTIR data confirmed 13 particles of polyamide-6 and 6 particles of rayon polymers. These results provide a baseline of MP contamination in seafood from Bangladesh that should be useful for future monitoring efforts.

Microplastics in fishes from the Northern Bay of Bengal

Microplastics were determined in pink Bombay-duck (Harpadon nehereus), white Bombay-duck (H. translucens) and gold-stripe sardine (Sardinella gibbosa) collected from the Northern Bay of Bengal at Bangladesh. Gastrointestinal tracts of fishes (n = 25 per species) were examined for microplastics following alkali digestion protocol, microscopic observations and chemical analysis by micro-Fourier Transformed Infrared Spectroscope (μ-FTIR). A total of 443 microplastic items were found in the intestines of H. nehereus, H. translucens and S. gibbosa, averaging in the range of 3.20-8.72 items per species. Among various shapes, colours and types of microplastics, irregular (37-43%), white/transparent (26-68%) and fiber (50-55%) were dominant. The size fraction of microplastics ranging between 1 μm and 5 mm was 68-84 items/kg biomass, and μ-FTIR analysis identified 13 particles of polyethylene terephthalate and 66 particles of polyamide. The study findings raised concern that microplastics in marine fish could be a threat to public health via the food chain.