1
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Zhang H, Lundberg M, Tarka M, Hasselquist D, Hansson B. Evidence of Site-Specific and Male-Biased Germline Mutation Rate in a Wild Songbird. Genome Biol Evol 2023; 15:evad180. [PMID: 37793164 PMCID: PMC10627410 DOI: 10.1093/gbe/evad180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 09/07/2023] [Accepted: 09/26/2023] [Indexed: 10/06/2023] Open
Abstract
Germline mutations are the ultimate source of genetic variation and the raw material for organismal evolution. Despite their significance, the frequency and genomic locations of mutations, as well as potential sex bias, are yet to be widely investigated in most species. To address these gaps, we conducted whole-genome sequencing of 12 great reed warblers (Acrocephalus arundinaceus) in a pedigree spanning 3 generations to identify single-nucleotide de novo mutations (DNMs) and estimate the germline mutation rate. We detected 82 DNMs within the pedigree, primarily enriched at CpG sites but otherwise randomly located along the chromosomes. Furthermore, we observed a pronounced sex bias in DNM occurrence, with male warblers exhibiting three times more mutations than females. After correction for false negatives and adjusting for callable sites, we obtained a mutation rate of 7.16 × 10-9 mutations per site per generation (m/s/g) for the autosomes and 5.10 × 10-9 m/s/g for the Z chromosome. To demonstrate the utility of species-specific mutation rates, we applied our autosomal mutation rate in models reconstructing the demographic history of the great reed warbler. We uncovered signs of drastic population size reductions predating the last glacial period (LGP) and reduced gene flow between western and eastern populations during the LGP. In conclusion, our results provide one of the few direct estimates of the mutation rate in wild songbirds and evidence for male-driven mutations in accordance with theoretical expectations.
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Affiliation(s)
- Hongkai Zhang
- Department of Biology, Lund University, Lund, Sweden
| | - Max Lundberg
- Department of Biology, Lund University, Lund, Sweden
| | - Maja Tarka
- Department of Biology, Lund University, Lund, Sweden
| | | | - Bengt Hansson
- Department of Biology, Lund University, Lund, Sweden
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2
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Sjöberg S, Andersson A, Bäckman J, Hansson B, Malmiga G, Tarka M, Hasselquist D, Lindström Å, Alerstam T. Solar heating may explain extreme diel flight altitude changes in migrating birds. Curr Biol 2023; 33:4232-4237.e2. [PMID: 37689066 DOI: 10.1016/j.cub.2023.08.035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 06/23/2023] [Accepted: 08/11/2023] [Indexed: 09/11/2023]
Abstract
Great reed warblers, Acrocephalus arundinaceus,1 and great snipes, Gallinago media,2 exhibit a diel cycle in flight altitudes-flying much higher during the day than the night-when performing migratory flights covering both night and day. One hypothesis proposed to explain this behavior is that the birds face additional heating by solar radiation during daytime and hence must climb to very high, and thus also very cold, altitudes to avoid overheating during daytime flights.1,2 Yet, solar heat gain in birds has been shown to drastically decrease with wind speed,3,4 and the quantitative heating effect by solar radiation on a bird flying with an airspeed of 10 m/s or more is unknown. We analyzed temperature data from multisensor data loggers (MDLs)5,6 placed without direct exposure to solar radiation on great reed warblers (the logger covered by feathers on the back) and great snipes (the logger on the leg, covered from the sun by the tail). We found that logger temperatures were significantly higher (5.9°C-8.8°C in great reed warblers and 4.8°C-5.4°C in great snipes) during the day than during the night in birds flying at the same altitudes (and thus also the same expected ambient air temperatures). These results strongly indicate that the heat balance of the flying birds is indeed affected by solar radiation, which is in accordance with the hypothesis that solar radiation is a key factor causing the remarkable diel cycles in flight altitude observed in these two long-distance migrant bird species.1,2.
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Affiliation(s)
- Sissel Sjöberg
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden.
| | - Arne Andersson
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden
| | - Johan Bäckman
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden
| | - Bengt Hansson
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden
| | - Gintaras Malmiga
- Nature Research Center, Laboratory of Avian Ecology, Akademijos St. 2, 08412 Vilnius, Lithuania
| | - Maja Tarka
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden
| | - Dennis Hasselquist
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden
| | - Åke Lindström
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden
| | - Thomas Alerstam
- Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden
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3
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Tobler M, Gómez-Blanco D, Hegemann A, Lapa M, Neto JM, Tarka M, Xiong Y, Hasselquist D. Telomeres in ecology and evolution: A review and classification of hypotheses. Mol Ecol 2022; 31:5946-5965. [PMID: 34865259 DOI: 10.1111/mec.16308] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 11/19/2021] [Accepted: 12/01/2021] [Indexed: 01/31/2023]
Abstract
Research on telomeres in the fields of ecology and evolution has been rapidly expanding over the last two decades. This has resulted in the formulation of a multitude of, often name-given, hypotheses related to the associations between telomeres and life-history traits or fitness-facilitating processes (and the mechanisms underlying them). However, the differences (or similarities) between the various hypotheses, which can originate from different research fields, are often not obvious. Our aim here is therefore to give an overview of the hypotheses that are of interest in ecology and evolution and to provide two frameworks that help discriminate among them. We group the hypotheses (i) based on their association with different research questions, and (ii) using a hierarchical approach that builds on the assumptions they make, such as about causality of telomere length/shortening and/or the proposed functional consequences of telomere shortening on organism performance. Both our frameworks show that there exist parallel lines of thoughts in different research fields. Moreover, they also clearly illustrate that there are in many cases competing hypotheses within clusters, and that some of these even have contradictory assumptions and/or predictions. We also touch upon two topics in telomere research that would benefit from further conceptualization. This review should help researchers, both those familiar with and those new to the subject, to identify future avenues of research.
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Affiliation(s)
| | | | - Arne Hegemann
- Department of Biology, Lund University, Lund, Sweden
| | - Mariana Lapa
- Department of Biology, Lund University, Lund, Sweden
| | - Júlio M Neto
- Department of Biology, Lund University, Lund, Sweden
| | - Maja Tarka
- Department of Biology, Lund University, Lund, Sweden
| | - Ye Xiong
- Department of Biology, Lund University, Lund, Sweden
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4
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Bohon J, Gonzalez E, Grace C, Harris CT, Jacobsen B, Kachiguine S, Kim D, MacArthur J, Martinez-McKinney F, Mazza S, Nizam M, Norvell N, Padilla R, Potter E, Prakash T, Prebys E, Ryan E, Schumm BA, Smedley J, Stuart D, Tarka M, Torrecilla IS, Wilder M, Zhu D. Use of diamond sensors for a high-flux, high-rate X-ray pass-through diagnostic. J Synchrotron Radiat 2022; 29:595-601. [PMID: 35510992 PMCID: PMC9070720 DOI: 10.1107/s1600577522003022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Accepted: 03/19/2022] [Indexed: 06/14/2023]
Abstract
X-ray free-electron lasers (XFELs) deliver pulses of coherent X-rays on the femtosecond time scale, with potentially high repetition rates. While XFELs provide high peak intensities, both the intensity and the centroid of the beam fluctuate strongly on a pulse-to-pulse basis, motivating high-rate beam diagnostics that operate over a large dynamic range. The fast drift velocity, low X-ray absorption and high radiation tolerance properties of chemical vapour deposition diamonds make these crystals a promising candidate material for developing a fast (multi-GHz) pass-through diagnostic for the next generation of XFELs. A new approach to the design of a diamond sensor signal path is presented, along with associated characterization studies performed in the XPP endstation of the LINAC Coherent Light Source (LCLS) at SLAC. Qualitative charge collection profiles (collected charge versus time) are presented and compared with those from a commercially available detector. Quantitative results on the charge collection efficiency and signal collection times are presented over a range of approximately four orders of magnitude in the generated electron-hole plasma density.
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Affiliation(s)
- J. Bohon
- Los Alamos National Laboratory, Los Alamos, NM 87545, USA
| | - E. Gonzalez
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - C. Grace
- Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - C. T. Harris
- Sandia National Laboratories, Albuquerque, NM 87123, USA
| | - B. Jacobsen
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - S. Kachiguine
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - D. Kim
- Los Alamos National Laboratory, Los Alamos, NM 87545, USA
| | - J. MacArthur
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - F. Martinez-McKinney
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - S. Mazza
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - M. Nizam
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - N. Norvell
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - R. Padilla
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - E. Potter
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - T. Prakash
- Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - E. Prebys
- University of California, Davis, CA 95616, USA
| | - E. Ryan
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - B. A. Schumm
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - J. Smedley
- Los Alamos National Laboratory, Los Alamos, NM 87545, USA
| | - D. Stuart
- University of California, Santa Barbara, CA 93106, USA
| | - M. Tarka
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | | | - M. Wilder
- Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064, USA
| | - D. Zhu
- SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
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5
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Morosinotto C, Bensch S, Tarka M, Karell P. Heritability and parental effects in telomere length in a color polymorphic long-lived bird. Physiol Biochem Zool 2022; 95:350-364. [DOI: 10.1086/720161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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6
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Al Kharusi S, Anton G, Badhrees I, Barbeau P, Beck D, Belov V, Bhatta T, Breidenbach M, Brunner T, Cao G, Cen W, Chambers C, Cleveland B, Coon M, Craycraft A, Daniels T, Darroch L, Daugherty S, Davis J, Delaquis S, Der Mesrobian-Kabakian A, DeVoe R, Dilling J, Dolgolenko A, Dolinski M, Echevers J, Fairbank W, Fairbank D, Farine J, Feyzbakhsh S, Fierlinger P, Fudenberg D, Gautam P, Gornea R, Gratta G, Hall C, Hansen E, Hoessl J, Hufschmidt P, Hughes M, Iverson A, Jamil A, Jessiman C, Jewell M, Johnson A, Karelin A, Kaufman L, Koffas T, Krücken R, Kuchenkov A, Kumar K, Lan Y, Larson A, Lenardo B, Leonard D, Li G, Li S, Li Z, Licciardi C, Lin Y, MacLellan R, McElroy T, Michel T, Mong B, Moore D, Murray K, Njoya O, Nusair O, Odian A, Ostrovskiy I, Perna A, Piepke A, Pocar A, Retière F, Robinson A, Rowson P, Ruddell D, Runge J, Schmidt S, Sinclair D, Skarpaas K, Soma A, Stekhanov V, Tarka M, Thibado S, Todd J, Tolba T, Totev T, Tsang R, Veenstra B, Veeraraghavan V, Vogel P, Vuilleumier JL, Wagenpfeil M, Watkins J, Weber M, Wen L, Wichoski U, Wrede G, Wu S, Xia Q, Yahne D, Yang L, Yen YR, Zeldovich O, Ziegler T. Search for Majoron-emitting modes of
Xe136
double beta decay with the complete EXO-200 dataset. Int J Clin Exp Med 2021. [DOI: 10.1103/physrevd.104.112002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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7
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Sigeman H, Strandh M, Proux-Wéra E, Kutschera VE, Ponnikas S, Zhang H, Lundberg M, Soler L, Bunikis I, Tarka M, Hasselquist D, Nystedt B, Westerdahl H, Hansson B. Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration. Mol Biol Evol 2021; 38:5275-5291. [PMID: 34542640 PMCID: PMC8662655 DOI: 10.1093/molbev/msab277] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
How the avian sex chromosomes first evolved from autosomes remains elusive as 100 million years (My) of divergence and degeneration obscure their evolutionary history. The Sylvioidea group of songbirds is interesting for understanding avian sex chromosome evolution because a chromosome fusion event ∼24 Ma formed "neo-sex chromosomes" consisting of an added (new) and an ancestral (old) part. Here, we report the complete female genome (ZW) of one Sylvioidea species, the great reed warbler (Acrocephalus arundinaceus). Our long-read assembly shows that the added region has been translocated to both Z and W, and whereas the added-Z has retained its gene order the added-W part has been heavily rearranged. Phylogenetic analyses show that recombination between the homologous added-Z and -W regions continued after the fusion event, and that recombination suppression across this region took several million years to be completed. Moreover, recombination suppression was initiated across multiple positions over the added-Z, which is not consistent with a simple linear progression starting from the fusion point. As expected following recombination suppression, the added-W show signs of degeneration including repeat accumulation and gene loss. Finally, we present evidence for nonrandom maintenance of slowly evolving and dosage-sensitive genes on both ancestral- and added-W, a process causing correlated evolution among orthologous genes across broad taxonomic groups, regardless of sex linkage.
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Affiliation(s)
- Hanna Sigeman
- Department of Biology, Lund University, Lund, Sweden
| | - Maria Strandh
- Department of Biology, Lund University, Lund, Sweden
| | - Estelle Proux-Wéra
- Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University, Solna, Sweden
| | - Verena E Kutschera
- Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University, Solna, Sweden
| | - Suvi Ponnikas
- Department of Biology, Lund University, Lund, Sweden
| | - Hongkai Zhang
- Department of Biology, Lund University, Lund, Sweden
| | - Max Lundberg
- Department of Biology, Lund University, Lund, Sweden
| | - Lucile Soler
- Department of Medical Biochemistry and Microbiology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Uppsala, Sweden
| | - Ignas Bunikis
- Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala Genome Center, Uppsala University, Uppsala, Sweden
| | - Maja Tarka
- Department of Biology, Lund University, Lund, Sweden
| | | | - Björn Nystedt
- Department of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Uppsala, Sweden
| | | | - Bengt Hansson
- Department of Biology, Lund University, Lund, Sweden
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8
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Sjöberg S, Malmiga G, Nord A, Andersson A, Bäckman J, Tarka M, Willemoes M, Thorup K, Hansson B, Alerstam T, Hasselquist D. Extreme altitudes during diurnal flights in a nocturnal songbird migrant. Science 2021; 372:646-648. [DOI: 10.1126/science.abe7291] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 03/25/2021] [Indexed: 01/03/2023]
Abstract
Billions of nocturnally migrating songbirds fly across oceans and deserts on their annual journeys. Using multisensor data loggers, we show that great reed warblers (Acrocephalus arundinaceus) regularly prolong their otherwise strictly nocturnal flights into daytime when crossing the Mediterranean Sea and the Sahara Desert. Unexpectedly, when prolonging their flights, they climbed steeply at dawn, from a mean of 2394 meters above sea level to reach extreme cruising altitudes (mean 5367 and maximum 6267 meters above sea level) during daytime flights. This previously unknown behavior of using exceedingly high flight altitudes when migrating during daytime could be caused by diel variation in ambient temperature, winds, predation, vision range, and solar radiation. Our finding of this notable behavior provides new perspectives on constraints in bird flight and might help to explain the evolution of nocturnal migration.
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Affiliation(s)
- Sissel Sjöberg
- Department of Biology, Lund University, Lund, Sweden
- Center for Macroecology, Evolution and Climate, Globe Institute; University of Copenhagen, Copenhagen, Denmark
| | | | - Andreas Nord
- Department of Biology, Lund University, Lund, Sweden
| | | | - Johan Bäckman
- Department of Biology, Lund University, Lund, Sweden
| | - Maja Tarka
- Department of Biology, Lund University, Lund, Sweden
| | | | - Kasper Thorup
- Center for Macroecology, Evolution and Climate, Globe Institute; University of Copenhagen, Copenhagen, Denmark
| | - Bengt Hansson
- Department of Biology, Lund University, Lund, Sweden
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9
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Al Kharusi S, Anton G, Badhrees I, Barbeau PS, Beck D, Belov V, Bhatta T, Breidenbach M, Brunner T, Cao GF, Cen WR, Chambers C, Cleveland B, Coon M, Craycraft A, Daniels T, Darroch L, Daugherty SJ, Davis J, Delaquis S, Der Mesrobian-Kabakian A, DeVoe R, Dilling J, Dolgolenko A, Dolinski MJ, Echevers J, Fairbank W, Fairbank D, Farine J, Feyzbakhsh S, Fierlinger P, Fudenberg D, Gautam P, Gornea R, Gratta G, Hall C, Hansen EV, Hoessl J, Hufschmidt P, Hughes M, Iverson A, Jamil A, Jessiman C, Jewell MJ, Johnson A, Karelin A, Kaufman LJ, Koffas T, Kostensalo J, Krücken R, Kuchenkov A, Kumar KS, Lan Y, Larson A, Lenardo BG, Leonard DS, Li GS, Li S, Li Z, Licciardi C, Lin YH, MacLellan R, McElroy T, Michel T, Mong B, Moore DC, Murray K, Nakarmi P, Njoya O, Nusair O, Odian A, Ostrovskiy I, Piepke A, Pocar A, Retière F, Robinson AL, Rowson PC, Ruddell D, Runge J, Schmidt S, Sinclair D, Skarpaas K, Soma AK, Stekhanov V, Suhonen J, Tarka M, Thibado S, Todd J, Tolba T, Totev TI, Tsang R, Veenstra B, Veeraraghavan V, Vogel P, Vuilleumier JL, Wagenpfeil M, Watkins J, Weber M, Wen LJ, Wichoski U, Wrede G, Wu SX, Xia Q, Yahne DR, Yang L, Yen YR, Zeldovich OY, Ziegler T. Measurement of the Spectral Shape of the β-Decay of ^{137}Xe to the Ground State of ^{137}Cs in EXO-200 and Comparison with Theory. Phys Rev Lett 2020; 124:232502. [PMID: 32603173 DOI: 10.1103/physrevlett.124.232502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 04/17/2020] [Accepted: 05/07/2020] [Indexed: 06/11/2023]
Abstract
We report on a comparison between the theoretically predicted and experimentally measured spectra of the first-forbidden nonunique β-decay transition ^{137}Xe(7/2^{-})→^{137}Cs(7/2^{+}). The experimental data were acquired by the EXO-200 experiment during a deployment of an AmBe neutron source. The ultralow background environment of EXO-200, together with dedicated source deployment and analysis procedures, allowed for collection of a pure sample of the decays, with an estimated signal to background ratio of more than 99 to 1 in the energy range from 1075 to 4175 keV. In addition to providing a rare and accurate measurement of the first-forbidden nonunique β-decay shape, this work constitutes a novel test of the calculated electron spectral shapes in the context of the reactor antineutrino anomaly and spectral bump.
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Affiliation(s)
- S Al Kharusi
- Physics Department, McGill University, Montreal, Quebec H3A 2T8, Canada
| | - G Anton
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - I Badhrees
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - P S Barbeau
- Department of Physics, Duke University, and Triangle Universities Nuclear Laboratory (TUNL), Durham, North Carolina 27708, USA
| | - D Beck
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - V Belov
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Centre "Kurchatov Institute", Moscow 117218, Russia
| | - T Bhatta
- Department of Physics, University of South Dakota, Vermillion, South Dakota 57069, USA
| | - M Breidenbach
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - T Brunner
- Physics Department, McGill University, Montreal, Quebec H3A 2T8, Canada
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - G F Cao
- Institute of High Energy Physics, Beijing 100049, China
| | - W R Cen
- Institute of High Energy Physics, Beijing 100049, China
| | - C Chambers
- Physics Department, McGill University, Montreal, Quebec H3A 2T8, Canada
| | - B Cleveland
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - M Coon
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - A Craycraft
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - T Daniels
- Department of Physics and Physical Oceanography, University of North Carolina at Wilmington, Wilmington, North Carolina 28403, USA
| | - L Darroch
- Physics Department, McGill University, Montreal, Quebec H3A 2T8, Canada
| | - S J Daugherty
- Physics Department and CEEM, Indiana University, Bloomington, Indiana 47405, USA
| | - J Davis
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - S Delaquis
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | | | - R DeVoe
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - J Dilling
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A Dolgolenko
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Centre "Kurchatov Institute", Moscow 117218, Russia
| | - M J Dolinski
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - J Echevers
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - W Fairbank
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - D Fairbank
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - J Farine
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - S Feyzbakhsh
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - P Fierlinger
- Technische Universität München, Physikdepartment and Excellence Cluster Universe, Garching 80805, Germany
| | - D Fudenberg
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - P Gautam
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - R Gornea
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - G Gratta
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - C Hall
- Physics Department, University of Maryland, College Park, Maryland 20742, USA
| | - E V Hansen
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - J Hoessl
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - P Hufschmidt
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - M Hughes
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Iverson
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - A Jamil
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - C Jessiman
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - M J Jewell
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - A Johnson
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - A Karelin
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Centre "Kurchatov Institute", Moscow 117218, Russia
| | - L J Kaufman
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - T Koffas
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - J Kostensalo
- University of Jyväskylä, Department of Physics, P.O. Box 35 (YFL), Jyväskylä FI-40014, Finland
| | - R Krücken
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A Kuchenkov
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Centre "Kurchatov Institute", Moscow 117218, Russia
| | - K S Kumar
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - Y Lan
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A Larson
- Department of Physics, University of South Dakota, Vermillion, South Dakota 57069, USA
| | - B G Lenardo
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - D S Leonard
- IBS Center for Underground Physics, Daejeon 34126, Korea
| | - G S Li
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - S Li
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - Z Li
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - C Licciardi
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - Y H Lin
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - R MacLellan
- Department of Physics, University of South Dakota, Vermillion, South Dakota 57069, USA
| | - T McElroy
- Physics Department, McGill University, Montreal, Quebec H3A 2T8, Canada
| | - T Michel
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - B Mong
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - D C Moore
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - K Murray
- Physics Department, McGill University, Montreal, Quebec H3A 2T8, Canada
| | - P Nakarmi
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - O Njoya
- Department of Physics and Astronomy, Stony Brook University, SUNY, Stony Brook, New York 11794, USA
| | - O Nusair
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Odian
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - I Ostrovskiy
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Piepke
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Pocar
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - F Retière
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A L Robinson
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - P C Rowson
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - D Ruddell
- Department of Physics and Physical Oceanography, University of North Carolina at Wilmington, Wilmington, North Carolina 28403, USA
| | - J Runge
- Department of Physics, Duke University, and Triangle Universities Nuclear Laboratory (TUNL), Durham, North Carolina 27708, USA
| | - S Schmidt
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - D Sinclair
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - K Skarpaas
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - A K Soma
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - V Stekhanov
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Centre "Kurchatov Institute", Moscow 117218, Russia
| | - J Suhonen
- University of Jyväskylä, Department of Physics, P.O. Box 35 (YFL), Jyväskylä FI-40014, Finland
| | - M Tarka
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - S Thibado
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - J Todd
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - T Tolba
- Institute of High Energy Physics, Beijing 100049, China
| | - T I Totev
- Physics Department, McGill University, Montreal, Quebec H3A 2T8, Canada
| | - R Tsang
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - B Veenstra
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - V Veeraraghavan
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - P Vogel
- Kellogg Lab, Caltech, Pasadena, California 91125, USA
| | - J-L Vuilleumier
- LHEP, Albert Einstein Center, University of Bern, Bern CH-3012, Switzerland
| | - M Wagenpfeil
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - J Watkins
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - M Weber
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - L J Wen
- Institute of High Energy Physics, Beijing 100049, China
| | - U Wichoski
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - G Wrede
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - S X Wu
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - Q Xia
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - D R Yahne
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - L Yang
- Department of Physics, University of California San Diego, La Jolla, California 92093, USA
| | - Y-R Yen
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - O Ya Zeldovich
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Centre "Kurchatov Institute", Moscow 117218, Russia
| | - T Ziegler
- Erlangen Centre for Astroparticle Physics (ECAP), Friedrich-Alexander University Erlangen-Nürnberg, Erlangen 91058, Germany
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10
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Hagen IJ, Lien S, Billing AM, Elgvin TO, Trier C, Niskanen AK, Tarka M, Slate J, Sætre G, Jensen H. A genome‐wide linkage map for the house sparrow (Passer domesticus) provides insights into the evolutionary history of the avian genome. Mol Ecol Resour 2020; 20:544-559. [DOI: 10.1111/1755-0998.13134] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 11/07/2019] [Accepted: 12/10/2019] [Indexed: 01/18/2023]
Affiliation(s)
- Ingerid J. Hagen
- Centre for Biodiversity Dynamics Department of Biology Norwegian University of Science and Technology Trondheim Norway
- Norwegian Institute for Nature Research (NINA) Trondheim Norway
| | - Sigbjørn Lien
- Centre for Integrative Genetics Department of Animal and Aquacultural Sciences Faculty of Biosciences Norwegian University of Life Sciences Ås Norway
| | - Anna M. Billing
- Centre for Biodiversity Dynamics Department of Biology Norwegian University of Science and Technology Trondheim Norway
| | - Tore O. Elgvin
- Centre for Ecological and Evolutionary Synthesis Department of Biology University of Oslo Oslo Norway
| | - Cassandra Trier
- Centre for Ecological and Evolutionary Synthesis Department of Biology University of Oslo Oslo Norway
| | - Alina K. Niskanen
- Centre for Biodiversity Dynamics Department of Biology Norwegian University of Science and Technology Trondheim Norway
- Ecology and Genetics Research Unit University of Oulu Oulu Finland
| | - Maja Tarka
- Centre for Biodiversity Dynamics Department of Biology Norwegian University of Science and Technology Trondheim Norway
- Department of Biology Lund University Lund Sweden
| | - Jon Slate
- Department of Animal and Plant Sciences University of Sheffield Western Bank Sheffield UK
| | - Glenn‐Peter Sætre
- Centre for Ecological and Evolutionary Synthesis Department of Biology University of Oslo Oslo Norway
| | - Henrik Jensen
- Centre for Biodiversity Dynamics Department of Biology Norwegian University of Science and Technology Trondheim Norway
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11
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Anton G, Badhrees I, Barbeau PS, Beck D, Belov V, Bhatta T, Breidenbach M, Brunner T, Cao GF, Cen WR, Chambers C, Cleveland B, Coon M, Craycraft A, Daniels T, Danilov M, Darroch L, Daugherty SJ, Davis J, Delaquis S, Der Mesrobian-Kabakian A, DeVoe R, Dilling J, Dolgolenko A, Dolinski MJ, Echevers J, Fairbank W, Fairbank D, Farine J, Feyzbakhsh S, Fierlinger P, Fudenberg D, Gautam P, Gornea R, Gratta G, Hall C, Hansen EV, Hoessl J, Hufschmidt P, Hughes M, Iverson A, Jamil A, Jessiman C, Jewell MJ, Johnson A, Karelin A, Kaufman LJ, Koffas T, Krücken R, Kuchenkov A, Kumar KS, Lan Y, Larson A, Lenardo BG, Leonard DS, Li GS, Li S, Li Z, Licciardi C, Lin YH, MacLellan R, McElroy T, Michel T, Mong B, Moore DC, Murray K, Njoya O, Nusair O, Odian A, Ostrovskiy I, Piepke A, Pocar A, Retière F, Robinson AL, Rowson PC, Ruddell D, Runge J, Schmidt S, Sinclair D, Soma AK, Stekhanov V, Tarka M, Todd J, Tolba T, Totev TI, Veenstra B, Veeraraghavan V, Vogel P, Vuilleumier JL, Wagenpfeil M, Watkins J, Weber M, Wen LJ, Wichoski U, Wrede G, Wu SX, Xia Q, Yahne DR, Yang L, Yen YR, Zeldovich OY, Ziegler T. Search for Neutrinoless Double-β Decay with the Complete EXO-200 Dataset. Phys Rev Lett 2019; 123:161802. [PMID: 31702371 DOI: 10.1103/physrevlett.123.161802] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Revised: 07/30/2019] [Indexed: 06/10/2023]
Abstract
A search for neutrinoless double-β decay (0νββ) in ^{136}Xe is performed with the full EXO-200 dataset using a deep neural network to discriminate between 0νββ and background events. Relative to previous analyses, the signal detection efficiency has been raised from 80.8% to 96.4±3.0%, and the energy resolution of the detector at the Q value of ^{136}Xe 0νββ has been improved from σ/E=1.23% to 1.15±0.02% with the upgraded detector. Accounting for the new data, the median 90% confidence level 0νββ half-life sensitivity for this analysis is 5.0×10^{25} yr with a total ^{136}Xe exposure of 234.1 kg yr. No statistically significant evidence for 0νββ is observed, leading to a lower limit on the 0νββ half-life of 3.5×10^{25} yr at the 90% confidence level.
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Affiliation(s)
- G Anton
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - I Badhrees
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - P S Barbeau
- Department of Physics, Duke University, and Triangle Universities Nuclear Laboratory, Durham, North Carolina 27708, USA
| | - D Beck
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - V Belov
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Center "Kurchatov Institute," 117218 Moscow, Russia
| | - T Bhatta
- Department of Physics, University of South Dakota, Vermillion, South Dakota 57069, USA
| | - M Breidenbach
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - T Brunner
- Physics Department, McGill University, Montreal H3A 2T8, Quebec, Canada
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - G F Cao
- Institute of High Energy Physics, Beijing 100049, China
| | - W R Cen
- Institute of High Energy Physics, Beijing 100049, China
| | - C Chambers
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - B Cleveland
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - M Coon
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - A Craycraft
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - T Daniels
- Department of Physics and Physical Oceanography, University of North Carolina at Wilmington, Wilmington, North Carolina 28403, USA
| | - M Danilov
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Center "Kurchatov Institute," 117218 Moscow, Russia
| | - L Darroch
- Physics Department, McGill University, Montreal H3A 2T8, Quebec, Canada
| | - S J Daugherty
- Physics Department and CEEM, Indiana University, Bloomington, Indiana 47405, USA
| | - J Davis
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - S Delaquis
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | | | - R DeVoe
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - J Dilling
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A Dolgolenko
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Center "Kurchatov Institute," 117218 Moscow, Russia
| | - M J Dolinski
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - J Echevers
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - W Fairbank
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - D Fairbank
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - J Farine
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - S Feyzbakhsh
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - P Fierlinger
- Physik Department and Excellence Cluster Universe, Technische Universität München, Garching 80805, Germany
| | - D Fudenberg
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - P Gautam
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - R Gornea
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - G Gratta
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - C Hall
- Physics Department, University of Maryland, College Park, Maryland 20742, USA
| | - E V Hansen
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - J Hoessl
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - P Hufschmidt
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - M Hughes
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Iverson
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - A Jamil
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - C Jessiman
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - M J Jewell
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - A Johnson
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - A Karelin
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Center "Kurchatov Institute," 117218 Moscow, Russia
| | - L J Kaufman
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - T Koffas
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - R Krücken
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A Kuchenkov
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Center "Kurchatov Institute," 117218 Moscow, Russia
| | - K S Kumar
- Department of Physics and Astronomy, Stony Brook University, SUNY, Stony Brook, New York 11794, USA
| | - Y Lan
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A Larson
- Department of Physics, University of South Dakota, Vermillion, South Dakota 57069, USA
| | - B G Lenardo
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - D S Leonard
- IBS Center for Underground Physics, Daejeon 34126, Korea
| | - G S Li
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - S Li
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - Z Li
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - C Licciardi
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - Y H Lin
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - R MacLellan
- Department of Physics, University of South Dakota, Vermillion, South Dakota 57069, USA
| | - T McElroy
- Physics Department, McGill University, Montreal H3A 2T8, Quebec, Canada
| | - T Michel
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - B Mong
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - D C Moore
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - K Murray
- Physics Department, McGill University, Montreal H3A 2T8, Quebec, Canada
| | - O Njoya
- Department of Physics and Astronomy, Stony Brook University, SUNY, Stony Brook, New York 11794, USA
| | - O Nusair
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Odian
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - I Ostrovskiy
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Piepke
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Pocar
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - F Retière
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A L Robinson
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - P C Rowson
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - D Ruddell
- Department of Physics and Physical Oceanography, University of North Carolina at Wilmington, Wilmington, North Carolina 28403, USA
| | - J Runge
- Department of Physics, Duke University, and Triangle Universities Nuclear Laboratory, Durham, North Carolina 27708, USA
| | - S Schmidt
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - D Sinclair
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A K Soma
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - V Stekhanov
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Center "Kurchatov Institute," 117218 Moscow, Russia
| | - M Tarka
- Amherst Center for Fundamental Interactions and Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - J Todd
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - T Tolba
- Institute of High Energy Physics, Beijing 100049, China
| | - T I Totev
- Physics Department, McGill University, Montreal H3A 2T8, Quebec, Canada
| | - B Veenstra
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - V Veeraraghavan
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - P Vogel
- Kellogg Lab, Caltech, Pasadena, California 91125, USA
| | - J-L Vuilleumier
- LHEP, Albert Einstein Center, University of Bern, Bern CH-3012, Switzerland
| | - M Wagenpfeil
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - J Watkins
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - M Weber
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - L J Wen
- Institute of High Energy Physics, Beijing 100049, China
| | - U Wichoski
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - G Wrede
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
| | - S X Wu
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - Q Xia
- Wright Laboratory, Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - D R Yahne
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - L Yang
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - Y-R Yen
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - O Ya Zeldovich
- Institute for Theoretical and Experimental Physics named by A.I. Alikhanov of National Research Center "Kurchatov Institute," 117218 Moscow, Russia
| | - T Ziegler
- Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen 91058, Germany
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12
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Radchuk V, Reed T, Teplitsky C, van de Pol M, Charmantier A, Hassall C, Adamík P, Adriaensen F, Ahola MP, Arcese P, Miguel Avilés J, Balbontin J, Berg KS, Borras A, Burthe S, Clobert J, Dehnhard N, de Lope F, Dhondt AA, Dingemanse NJ, Doi H, Eeva T, Fickel J, Filella I, Fossøy F, Goodenough AE, Hall SJG, Hansson B, Harris M, Hasselquist D, Hickler T, Joshi J, Kharouba H, Martínez JG, Mihoub JB, Mills JA, Molina-Morales M, Moksnes A, Ozgul A, Parejo D, Pilard P, Poisbleau M, Rousset F, Rödel MO, Scott D, Senar JC, Stefanescu C, Stokke BG, Kusano T, Tarka M, Tarwater CE, Thonicke K, Thorley J, Wilting A, Tryjanowski P, Merilä J, Sheldon BC, Pape Møller A, Matthysen E, Janzen F, Dobson FS, Visser ME, Beissinger SR, Courtiol A, Kramer-Schadt S. Adaptive responses of animals to climate change are most likely insufficient. Nat Commun 2019; 10:3109. [PMID: 31337752 PMCID: PMC6650445 DOI: 10.1038/s41467-019-10924-4] [Citation(s) in RCA: 190] [Impact Index Per Article: 38.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2018] [Accepted: 05/15/2019] [Indexed: 12/11/2022] Open
Abstract
Biological responses to climate change have been widely documented across taxa and regions, but it remains unclear whether species are maintaining a good match between phenotype and environment, i.e. whether observed trait changes are adaptive. Here we reviewed 10,090 abstracts and extracted data from 71 studies reported in 58 relevant publications, to assess quantitatively whether phenotypic trait changes associated with climate change are adaptive in animals. A meta-analysis focussing on birds, the taxon best represented in our dataset, suggests that global warming has not systematically affected morphological traits, but has advanced phenological traits. We demonstrate that these advances are adaptive for some species, but imperfect as evidenced by the observed consistent selection for earlier timing. Application of a theoretical model indicates that the evolutionary load imposed by incomplete adaptive responses to ongoing climate change may already be threatening the persistence of species. It is unclear whether species’ responses to climate change tend to be adaptive or sufficient to keep up with climate change. Here, Radchuk et al. perform a meta-analysis showing that in birds phenology has advanced adaptively in some species, though not all the way to the new optima.
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Affiliation(s)
- Viktoriia Radchuk
- Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Straße 17, 10315, Berlin, Germany.
| | - Thomas Reed
- School of Biological, Earth and Environmental Sciences, University College Cork, Cork, T23 N73K, Ireland
| | - Céline Teplitsky
- CEFE UMR 5175, CNRS - Université de Montpellier - Université Paul-Valéry Montpellier - EPHE, 1919 route de Mende, 34293, Montpellier Cedex 5, France
| | - Martijn van de Pol
- Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB, Wageningen, The Netherlands
| | - Anne Charmantier
- CEFE UMR 5175, CNRS - Université de Montpellier - Université Paul-Valéry Montpellier - EPHE, 1919 route de Mende, 34293, Montpellier Cedex 5, France
| | - Christopher Hassall
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Peter Adamík
- Department of Zoology, Palacký University, tř. 17. listopadu 50, 771 46, Olomouc, Czech Republic
| | - Frank Adriaensen
- Evolutionary Ecology Group, University of Antwerp, Universiteitsplein 1, 2610, Wilrijk, Belgium
| | - Markus P Ahola
- Swedish Museum of Natural History, P.O. Box 50007, 10405, Stockholm, Sweden
| | - Peter Arcese
- Department of Forest and Conservation Sciences, 2424 Main Mall, Vancouver, V6T 1Z4, BC, Canada
| | - Jesús Miguel Avilés
- Department of Functional and Evolutionary Ecology, Experimental Station of Arid Zones (EEZA-CSIC), Ctra de Sacramento s/n, 04120, Almería, Spain
| | - Javier Balbontin
- Department of Zoology, Faculty of Biology, University of Seville, Avenue Reina Mercedes, 41012, Seville, Spain
| | - Karl S Berg
- Department of Biological Sciences, University of Texas Rio Grande Valley, Brownsville, 78520, TX, USA
| | - Antoni Borras
- Museu de Ciències Naturals de Barcelona, P° Picasso s/n, Parc Ciutadella, 08003, Barcelona, Spain
| | - Sarah Burthe
- Centre for Ecology and Hydrology, Bush Estate, Penicuik, EH26 0QB, UK
| | - Jean Clobert
- Station of Experimental and Theoretical Ecology (SETE), UMR 5321, CNRS and University Paul Sabatier, 2 route du CNRS, 09200, Moulis, France
| | - Nina Dehnhard
- Behavioural Ecology and Ecophysiology Group, University of Antwerp, Universiteitsplein 1, 2610, Wilrijk (Antwerp), Belgium
| | - Florentino de Lope
- Department of Anatomy, Cellular Biology and Zoology, University of Extremadura, 06006, Badajoz, Spain
| | - André A Dhondt
- Lab of Ornithology, Cornell University, Ithaca, NY, 14850, USA
| | - Niels J Dingemanse
- Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Großhaderner Str. 2, Planegg-Martinsried, 82152, Germany
| | - Hideyuki Doi
- Graduate School of Simulation Studies, University of Hyogo, 7-1-28 Minatojima-minamimachi, Kobe, 650-0047, Japan
| | - Tapio Eeva
- Department of Biology, University of Turku, Turku, FI-20014, Finland
| | - Joerns Fickel
- Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Straße 17, 10315, Berlin, Germany.,Institute for Biochemistry and Biology, Potsdam University, Karl-Liebknecht-Strasse 24-25, 14476, Potsdam, Germany
| | - Iolanda Filella
- CREAF, 08193, Cerdanyola del Vallès, Spain.,CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, 08193, Spain
| | - Frode Fossøy
- Norwegian Institute for Nature Research (NINA), P.O. Box 5685 Torgarden, 7485, Trondheim, Norway.,Department of Biology, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491, Trondheim, Norway
| | - Anne E Goodenough
- School of Natural and Social Sciences, University of Gloucestershire, Swindon Road, Cheltenham, GL50 4AZ, UK
| | - Stephen J G Hall
- Estonian University of Life Sciences, Kreutzwaldi 5, 51014, Tartu, Estonia
| | - Bengt Hansson
- Department of Biology, Lund University, 22362, Lund, Sweden
| | - Michael Harris
- Centre for Ecology and Hydrology, Bush Estate, Penicuik, EH26 0QB, UK
| | | | - Thomas Hickler
- Senckenberg Biodiversity and Climate Research Center (BiK-F), Senckenberganlage 25, 60325, Frankfurt/Main, Germany
| | - Jasmin Joshi
- Biodiversity research/Systematic Botany, University of Potsdam, Maulbeerallee 1, Berlin, 14469, Germany.,Institute for Landscape and Open Space, HSR Hochschule für Technik, Oberseestrasse 10, Rapperswil, 8640, Switzerland
| | - Heather Kharouba
- Department of Biology, University of Ottawa, Ontario, K1N 6N5, Canada
| | - Juan Gabriel Martínez
- Departamento de Zoologia, Facultad de Ciencias, Universidad de Granada, 18071, Granada, Spain
| | - Jean-Baptiste Mihoub
- Sorbonne Université, Muséum National d'Histoire Naturelle, CNRS, CESCO, UMR 7204, 61 rue Buffon, 75005, Paris, France
| | - James A Mills
- 10527A Skyline Drive, Corning, NY, 14830, USA.,3 Miromiro Drive, Kaikoura, 7300, New Zealand
| | - Mercedes Molina-Morales
- Department of Anatomy, Cellular Biology and Zoology, University of Extremadura, 06006, Badajoz, Spain
| | - Arne Moksnes
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, 08193, Spain
| | - Arpat Ozgul
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, 8057, Switzerland
| | - Deseada Parejo
- Department of Anatomy, Cellular Biology and Zoology, University of Extremadura, 06006, Badajoz, Spain
| | - Philippe Pilard
- LPO Mission Rapaces, 26 avenue Alain Guigue, 13104, Mas-Thibert, France
| | - Maud Poisbleau
- Behavioural Ecology and Ecophysiology Group, University of Antwerp, Universiteitsplein 1, 2610, Wilrijk (Antwerp), Belgium
| | - Francois Rousset
- ISEM, Université de Montpellier, CNRS, IRD, EPHE, Montpellier, 34095, France
| | - Mark-Oliver Rödel
- Leibniz Institute for Evolution and Biodiversity Science, Museum für Naturkunde, Invalidenstrasse 43, 10115, Berlin, Germany
| | - David Scott
- Savannah River Ecology Laboratory, University of Georgia, Aiken, SC, 29802, USA
| | - Juan Carlos Senar
- Museu de Ciències Naturals de Barcelona, P° Picasso s/n, Parc Ciutadella, 08003, Barcelona, Spain
| | - Constanti Stefanescu
- CREAF, 08193, Cerdanyola del Vallès, Spain.,Natural History Museum of Granollers, Francesc Macià, 52, 08401, Granollers, Spain
| | - Bård G Stokke
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, 08193, Spain.,Norwegian Institute for Nature Research (NINA), P.O. Box 5685 Torgarden, 7485, Trondheim, Norway
| | - Tamotsu Kusano
- Department of Biological Sciences, Tokyo Metropolitan University, 1-1 Minami-Osawa, Hachioji-shi, Tokyo, 192-0397, Japan
| | - Maja Tarka
- Department of Biology, Lund University, 22362, Lund, Sweden
| | - Corey E Tarwater
- Department of Zoology and Physiology, University of Wyoming, 1000 E University Avenue, Laramie, WY, 82071, USA
| | - Kirsten Thonicke
- Research Domain 1 'Earth System Analysis', Potsdam Institute for Climate Impact Research (PIK), P.O. Box 60 12 03, Telegrafenberg A31, Potsdam, D-14412, Germany
| | - Jack Thorley
- Imperial College London, Silwood Park Campus, Buckurst Road, Ascot, SL5 7PY, UK.,Department of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 3EJ, UK
| | - Andreas Wilting
- Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Straße 17, 10315, Berlin, Germany
| | - Piotr Tryjanowski
- Institute of Zoology, Poznan University of Life Sciences, Wojska Polskiego 71C, 60-625, Poznań, Poland
| | - Juha Merilä
- Organismal and Evolutionary Biology Research Programme, Ecological Genetics Research Unit, Faculty Biological and Environmental Sciences, University of Helsinki, 00014, Helsinki, Finland
| | - Ben C Sheldon
- Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK
| | - Anders Pape Møller
- Ecologie Systématique Evolution, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, 91405, Orsay Cedex, France
| | - Erik Matthysen
- Evolutionary Ecology Group, University of Antwerp, Universiteitsplein 1, 2610, Wilrijk, Belgium
| | - Fredric Janzen
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, 50011, USA
| | - F Stephen Dobson
- Department of Biological Sciences, Auburn University, Auburn, AL, 36849, USA
| | - Marcel E Visser
- Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB, Wageningen, The Netherlands
| | - Steven R Beissinger
- Department of Environmental Science, Policy and Management and Museum of Vertebrate Zoology, University of California, Berkeley, 94720, CA, USA
| | - Alexandre Courtiol
- Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Straße 17, 10315, Berlin, Germany
| | - Stephanie Kramer-Schadt
- Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Straße 17, 10315, Berlin, Germany.,Department of Ecology, Technische Universität Berlin, 12165, Berlin, Germany
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13
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Roved J, Hansson B, Tarka M, Hasselquist D, Westerdahl H. Evidence for sexual conflict over major histocompatibility complex diversity in a wild songbird. Proc Biol Sci 2018; 285:rspb.2018.0841. [PMID: 30068671 PMCID: PMC6111173 DOI: 10.1098/rspb.2018.0841] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Accepted: 07/06/2018] [Indexed: 12/24/2022] Open
Abstract
Sex differences in parasite load and immune responses are found across a wide range of animals, with females generally having lower parasite loads and stronger immune responses than males. Intrigued by these general patterns, we investigated if there was any sign of sex-specific selection on an essential component of adaptive immunity that is known to affect fitness, the major histocompatibility complex class I (MHC-I) genes, in a 20-year study of great reed warblers. Our analyses on fitness related to MHC-I diversity showed a highly significant interaction between MHC-I diversity and sex, where males with higher, and females with lower, MHC-I diversity were more successful in recruiting offspring. Importantly, mean MHC-I diversity did not differ between males and females, and consequently neither sex reached its MHC-I fitness optimum. Thus, there is an unresolved genetic sexual conflict over MHC-I diversity in great reed warblers. Selection from pathogens is known to maintain MHC diversity, but previous theory ignores that the immune environments are considerably different in males and females. Our results suggest that sexually antagonistic selection is an important, previously neglected, force in the evolution of vertebrate adaptive immunity, and have implications for evolutionary understanding of costs of immune responses and autoimmune diseases.
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Affiliation(s)
- Jacob Roved
- Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Ecology Building, 223 62 Lund, Sweden
| | - Bengt Hansson
- Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Ecology Building, 223 62 Lund, Sweden
| | - Maja Tarka
- Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Ecology Building, 223 62 Lund, Sweden
| | - Dennis Hasselquist
- Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Ecology Building, 223 62 Lund, Sweden
| | - Helena Westerdahl
- Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Ecology Building, 223 62 Lund, Sweden
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14
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Hansson B, Sigeman H, Stervander M, Tarka M, Ponnikas S, Strandh M, Westerdahl H, Hasselquist D. Contrasting results from GWAS and QTL mapping on wing length in great reed warblers. Mol Ecol Resour 2018; 18:867-876. [DOI: 10.1111/1755-0998.12785] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Revised: 03/26/2018] [Accepted: 03/29/2018] [Indexed: 01/08/2023]
Affiliation(s)
| | | | - Martin Stervander
- Department of Biology Lund University Lund Sweden
- Institute of Ecology and Evolution University of Oregon Eugene Oregon
| | - Maja Tarka
- Department of Biology Lund University Lund Sweden
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15
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Immonen E, Hämäläinen A, Schuett W, Tarka M. Evolution of sex-specific pace-of-life syndromes: genetic architecture and physiological mechanisms. Behav Ecol Sociobiol 2018; 72:60. [PMID: 29576676 PMCID: PMC5856903 DOI: 10.1007/s00265-018-2462-1] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 11/13/2017] [Accepted: 02/07/2018] [Indexed: 11/16/2022]
Abstract
Sex differences in life history, physiology, and behavior are nearly ubiquitous across taxa, owing to sex-specific selection that arises from different reproductive strategies of the sexes. The pace-of-life syndrome (POLS) hypothesis predicts that most variation in such traits among individuals, populations, and species falls along a slow-fast pace-of-life continuum. As a result of their different reproductive roles and environment, the sexes also commonly differ in pace-of-life, with important consequences for the evolution of POLS. Here, we outline mechanisms for how males and females can evolve differences in POLS traits and in how such traits can covary differently despite constraints resulting from a shared genome. We review the current knowledge of the genetic basis of POLS traits and suggest candidate genes and pathways for future studies. Pleiotropic effects may govern many of the genetic correlations, but little is still known about the mechanisms involved in trade-offs between current and future reproduction and their integration with behavioral variation. We highlight the importance of metabolic and hormonal pathways in mediating sex differences in POLS traits; however, there is still a shortage of studies that test for sex specificity in molecular effects and their evolutionary causes. Considering whether and how sexual dimorphism evolves in POLS traits provides a more holistic framework to understand how behavioral variation is integrated with life histories and physiology, and we call for studies that focus on examining the sex-specific genetic architecture of this integration.
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Affiliation(s)
- Elina Immonen
- Department of Ecology and Genetics, Evolutionary Biology Centre (EBC), Uppsala University, Norbyvägen 18 D, SE-75 236 Uppsala, Sweden
| | - Anni Hämäläinen
- Department of Biological Sciences, University of Alberta, Edmonton, T6G 2E9 Canada
| | - Wiebke Schuett
- Zoological Institute, University of Hamburg, Martin-Luther-King Platz 3, 20146 Hamburg, Germany
| | - Maja Tarka
- Center for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, 7491 Trondheim, Norway
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16
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Albert J, Barbeau P, Beck D, Belov V, Breidenbach M, Brunner T, Burenkov A, Cao G, Chambers C, Cleveland B, Coon M, Craycraft A, Daniels T, Danilov M, Daugherty S, Davis C, Davis J, Delaquis S, Der Mesrobian-Kabakian A, DeVoe R, Díaz J, Didberidze T, Dilling J, Dolgolenko A, Dolinski M, Dunford M, Fairbank W, Farine J, Feyzbkhsh S, Feldmeier W, Fierlinger P, Fudenberg D, Gornea R, Graham K, Gratta G, Hall C, Homiller S, Hughes M, Jewell M, Jiang X, Johnson A, Johnson T, Johnston S, Karelin A, Kaufman L, Killick R, Koffas T, Kravitz S, Krücken R, Kuchenkov A, Kumar K, Leonard D, Licciardi C, Lin Y, Ling J, MacLellan R, Marino M, Mong B, Moore D, Nelson R, Njoya O, Odian A, Ostrovskiy I, Piepke A, Pocar A, Prescott C, Retiére F, Rowson P, Russell J, Schubert A, Sinclair D, Smith E, Stekhanov V, Tarka M, Tolba T, Tsang R, Twelker K, Vuilleumier JL, Vogel P, Waite A, Walton J, Walton T, Weber M, Wen L, Wichoski U, Wood J, Yang L, Yen YR, Zeldovich OY. First search for Lorentz andCPTviolation in double beta decay with EXO-200. Int J Clin Exp Med 2016. [DOI: 10.1103/physrevd.93.072001] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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17
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18
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Tarka M, Bolstad GH, Wacker S, Räsänen K, Hansen TF, Pélabon C. Did natural selection make the Dutch taller? A cautionary note on the importance of quantification in understanding evolution. Evolution 2015; 69:3204-6. [PMID: 26507881 DOI: 10.1111/evo.12803] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2015] [Revised: 10/01/2015] [Accepted: 10/19/2015] [Indexed: 12/19/2022]
Abstract
One of the main achievements of the modern synthesis is a rigorous mathematical theory for evolution by natural selection. Combining this theory with statistical models makes it possible to estimate the relevant parameters so as to quantify selection and evolution in nature. Although quantification is a sign of a mature science, statistical models are unfortunately often interpreted independently of the motivating mathematical theory. Without a link to theory, numerical results do not represent proper quantifications, because they lack the connections that designate their biological meaning. Here, we want to raise awareness and exemplify this problem by examining a recent study on natural selection in a contemporary human population. Stulp et al. (2015) concluded that natural selection may partly explain the increasing stature of the Dutch population. This conclusion was based on a qualitative assessment of the presence of selection on height. Here, we provide a quantitative interpretation of these results using standard evolutionary theory to show that natural selection has had a minuscule effect.
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Affiliation(s)
- Maja Tarka
- Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology (NTNU), 7491, Trondheim, Norway.
| | - Geir H Bolstad
- Norwegian Institute for Nature Research (NINA), Centre for Biodiversity Dynamics, 7485, Trondheim, Norway
| | - Sebastian Wacker
- Department of Biology, Norwegian University of Science and Technology (NTNU), 7491, Trondheim, Norway
| | - Katja Räsänen
- Department of Aquatic Ecology , Swiss Federal Institute of Aquatic Science and Technology, Eawag, 8600, Duebendorf, Switzerland.,Institute of Integrative Biology, ETH Zurich, 8092, Zurich, Switzerland
| | - Thomas F Hansen
- Department of Biology, CEES & Evogene, University of Oslo, 0316, Oslo, Norway
| | - Christophe Pélabon
- Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology (NTNU), 7491, Trondheim, Norway
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19
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Abstract
In a broad range of species--including humans--it has been demonstrated that telomere length declines throughout life and that it may be involved in cell and organismal senescence. This potential link to ageing and thus to fitness has triggered recent interest in understanding how variation in telomere length is inherited and maintained. However, previous studies suffer from two main drawbacks that limit the possibility of understanding the relative importance of genetic, parental and environmental influences on telomere length variation. These studies have been based on (i) telomere lengths measured at different time points in different individuals, despite the fact that telomere length changes over life, and (ii) parent-offspring regression techniques, which do not enable differentiation between genetic and parental components of inheritance. To overcome these drawbacks, in our study of a songbird, the great reed warbler, we have analysed telomere length measured early in life in both parents and offspring and applied statistical models (so-called 'animal models') that are based on long-term pedigree data. Our results showed a significant heritability of telomere length on the maternal but not on the paternal side, and that the mother's age was positively correlated with their offspring's telomere length. Furthermore, the pedigree-based analyses revealed a significant heritability and an equally large maternal effect. Our study demonstrates strong maternal influence on telomere length and future studies now need to elucidate possible underlying factors, including which types of maternal effects are involved.
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20
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Tarka M, Hansson B, Hasselquist D. Selection and evolutionary potential of spring arrival phenology in males and females of a migratory songbird. J Evol Biol 2015; 28:1024-38. [DOI: 10.1111/jeb.12638] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2014] [Revised: 11/30/2014] [Accepted: 01/14/2015] [Indexed: 01/16/2023]
Affiliation(s)
- M. Tarka
- Centre for Biodiversity Dynamics; Norwegian University of Science and Technology; Realfagsbygget; NTNU; Trondheim Norway
| | - B. Hansson
- Molecular Ecology and Evolution Lab; Department of Biology; Lund University; Lund Sweden
| | - D. Hasselquist
- Molecular Ecology and Evolution Lab; Department of Biology; Lund University; Lund Sweden
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21
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Twelker K, Kravitz S, Montero Díez M, Gratta G, Fairbank W, Albert JB, Auty DJ, Barbeau PS, Beck D, Benitez-Medina C, Breidenbach M, Brunner T, Cao GF, Chambers C, Cleveland B, Coon M, Craycraft A, Daniels T, Daugherty SJ, Davis CG, DeVoe R, Delaquis S, Didberidze T, Dilling J, Dolinski MJ, Dunford M, Fabris L, Farine J, Feldmeier W, Fierlinger P, Fudenberg D, Giroux G, Gornea R, Graham K, Hall C, Heffner M, Herrin S, Hughes M, Jiang XS, Johnson TN, Johnston S, Karelin A, Kaufman LJ, Killick R, Koffas T, Krücken R, Kuchenkov A, Kumar KS, Leonard DS, Leonard F, Licciardi C, Lin YH, MacLellan R, Marino MG, Mong B, Moore D, Odian A, Ostrovskiy I, Ouellet C, Piepke A, Pocar A, Retiere F, Rowson PC, Rozo MP, Schubert A, Sinclair D, Smith E, Stekhanov V, Tarka M, Tolba T, Tosi D, Vuilleumier JL, Walton J, Walton T, Weber M, Wen LJ, Wichoski U, Yang L, Yen YR, Zhao YB. An apparatus to manipulate and identify individual Ba ions from bulk liquid Xe. Rev Sci Instrum 2014; 85:095114. [PMID: 25273779 DOI: 10.1063/1.4895646] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We describe a system to transport and identify barium ions produced in liquid xenon, as part of R&D towards the second phase of a double beta decay experiment, nEXO. The goal is to identify the Ba ion resulting from an extremely rare nuclear decay of the isotope (136)Xe, hence providing a confirmation of the occurrence of the decay. This is achieved through Resonance Ionization Spectroscopy (RIS). In the test setup described here, Ba ions can be produced in liquid xenon or vacuum and collected on a clean substrate. This substrate is then removed to an analysis chamber under vacuum, where laser-induced thermal desorption and RIS are used with time-of-flight mass spectroscopy for positive identification of the barium decay product.
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Affiliation(s)
- K Twelker
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - S Kravitz
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - M Montero Díez
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - G Gratta
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - W Fairbank
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - J B Albert
- Physics Department and CEEM, Indiana University, Bloomington, Indiana 47405, USA
| | - D J Auty
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - P S Barbeau
- Department of Physics, Duke University and Triangle Universities Nuclear Laboratory (TUNL), Durham, North Carolina 27708, USA
| | - D Beck
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - C Benitez-Medina
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - M Breidenbach
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - T Brunner
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - G F Cao
- Institute of High Energy Physics, Beijing, China
| | - C Chambers
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - B Cleveland
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - M Coon
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - A Craycraft
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - T Daniels
- Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - S J Daugherty
- Physics Department and CEEM, Indiana University, Bloomington, Indiana 47405, USA
| | - C G Davis
- Physics Department, University of Maryland, College Park, Maryland 20742, USA
| | - R DeVoe
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - S Delaquis
- LHEP, Albert Einstein Center, University of Bern, Bern, Switzerland
| | - T Didberidze
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - J Dilling
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - M J Dolinski
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - M Dunford
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - L Fabris
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - J Farine
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - W Feldmeier
- Physik Department and Excellence Cluster Universe, Technische Universitat Munchen, Garching, Germany
| | - P Fierlinger
- Physik Department and Excellence Cluster Universe, Technische Universitat Munchen, Garching, Germany
| | - D Fudenberg
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - G Giroux
- LHEP, Albert Einstein Center, University of Bern, Bern, Switzerland
| | - R Gornea
- LHEP, Albert Einstein Center, University of Bern, Bern, Switzerland
| | - K Graham
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - C Hall
- Physics Department, University of Maryland, College Park, Maryland 20742, USA
| | - M Heffner
- Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - S Herrin
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - M Hughes
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - X S Jiang
- Institute of High Energy Physics, Beijing, China
| | - T N Johnson
- Physics Department and CEEM, Indiana University, Bloomington, Indiana 47405, USA
| | - S Johnston
- Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - A Karelin
- Institute for Theoretical and Experimental Physics, Moscow, Russia
| | - L J Kaufman
- Physics Department and CEEM, Indiana University, Bloomington, Indiana 47405, USA
| | - R Killick
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - T Koffas
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - R Krücken
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - A Kuchenkov
- Institute for Theoretical and Experimental Physics, Moscow, Russia
| | - K S Kumar
- Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - D S Leonard
- Department of Physics, University of Seoul, Seoul, South Korea
| | - F Leonard
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - C Licciardi
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - Y H Lin
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - R MacLellan
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - M G Marino
- Physik Department and Excellence Cluster Universe, Technische Universitat Munchen, Garching, Germany
| | - B Mong
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - D Moore
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - A Odian
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - I Ostrovskiy
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - C Ouellet
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - A Piepke
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - A Pocar
- Physics Department, University of Massachusetts, Amherst, Massachusetts 01003, USA
| | - F Retiere
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - P C Rowson
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - M P Rozo
- Physics Department, Carleton University, Ottawa, Ontario K1S 5B6, Canada
| | - A Schubert
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - D Sinclair
- TRIUMF, Vancouver, British Columbia V6T 2A3, Canada
| | - E Smith
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - V Stekhanov
- Institute for Theoretical and Experimental Physics, Moscow, Russia
| | - M Tarka
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - T Tolba
- LHEP, Albert Einstein Center, University of Bern, Bern, Switzerland
| | - D Tosi
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - J-L Vuilleumier
- LHEP, Albert Einstein Center, University of Bern, Bern, Switzerland
| | - J Walton
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - T Walton
- Physics Department, Colorado State University, Fort Collins, Colorado 80523, USA
| | - M Weber
- Physics Department, Stanford University, Stanford, California 94305, USA
| | - L J Wen
- Institute of High Energy Physics, Beijing, China
| | - U Wichoski
- Department of Physics, Laurentian University, Sudbury, Ontario P3E 2C6, Canada
| | - L Yang
- Physics Department, University of Illinois, Urbana-Champaign, Illinois 61801, USA
| | - Y-R Yen
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, USA
| | - Y B Zhao
- Institute of High Energy Physics, Beijing, China
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22
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Teplitsky C, Tarka M, Møller AP, Nakagawa S, Balbontín J, Burke TA, Doutrelant C, Gregoire A, Hansson B, Hasselquist D, Gustafsson L, de Lope F, Marzal A, Mills JA, Wheelwright NT, Yarrall JW, Charmantier A. Assessing multivariate constraints to evolution across ten long-term avian studies. PLoS One 2014; 9:e90444. [PMID: 24608111 PMCID: PMC3946496 DOI: 10.1371/journal.pone.0090444] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2013] [Accepted: 01/31/2014] [Indexed: 11/25/2022] Open
Abstract
Background In a rapidly changing world, it is of fundamental importance to understand processes constraining or facilitating adaptation through microevolution. As different traits of an organism covary, genetic correlations are expected to affect evolutionary trajectories. However, only limited empirical data are available. Methodology/Principal Findings We investigate the extent to which multivariate constraints affect the rate of adaptation, focusing on four morphological traits often shown to harbour large amounts of genetic variance and considered to be subject to limited evolutionary constraints. Our data set includes unique long-term data for seven bird species and a total of 10 populations. We estimate population-specific matrices of genetic correlations and multivariate selection coefficients to predict evolutionary responses to selection. Using Bayesian methods that facilitate the propagation of errors in estimates, we compare (1) the rate of adaptation based on predicted response to selection when including genetic correlations with predictions from models where these genetic correlations were set to zero and (2) the multivariate evolvability in the direction of current selection to the average evolvability in random directions of the phenotypic space. We show that genetic correlations on average decrease the predicted rate of adaptation by 28%. Multivariate evolvability in the direction of current selection was systematically lower than average evolvability in random directions of space. These significant reductions in the rate of adaptation and reduced evolvability were due to a general nonalignment of selection and genetic variance, notably orthogonality of directional selection with the size axis along which most (60%) of the genetic variance is found. Conclusions These results suggest that genetic correlations can impose significant constraints on the evolution of avian morphology in wild populations. This could have important impacts on evolutionary dynamics and hence population persistence in the face of rapid environmental change.
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Affiliation(s)
- Celine Teplitsky
- Département Ecologie et Gestion de la Biodiversité UMR 7204 CNRS/MNHN/UPMC, Muséum National d'Histoire Naturelle, Paris, France
- * E-mail:
| | - Maja Tarka
- Department of Biology, Lund University, Ecology Building, Lund, Sweden
| | - Anders P. Møller
- Laboratoire d'Ecologie, Systématique et Evolution, CNRS UMR 8079, Université Paris-Sud, Orsay, France
| | | | - Javier Balbontín
- Department of Zoology, Biology Building, University of Seville, Seville, Spain
| | - Terry A. Burke
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, United Kingdom
| | - Claire Doutrelant
- Centre d'Ecologie Fonctionnelle et Evolutive UMR 5175 CNRS, Montpellier, France
| | - Arnaud Gregoire
- Centre d'Ecologie Fonctionnelle et Evolutive UMR 5175 CNRS, Montpellier, France
| | - Bengt Hansson
- Department of Biology, Lund University, Ecology Building, Lund, Sweden
| | | | - Lars Gustafsson
- Department of Animal Ecology, Evolutionary Biology Center, Uppsala University, Uppsala, Sweden
| | | | - Alfonso Marzal
- Departamento de Zoología, Universidad de Extremadura, Badajoz, Spain
| | | | | | | | - Anne Charmantier
- Centre d'Ecologie Fonctionnelle et Evolutive UMR 5175 CNRS, Montpellier, France
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23
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Abstract
Intralocus sexual conflict (ISC) occurs when males and females have different adaptive peaks but are constrained from evolving sexual dimorphism because of shared genes. Implications of this conflict on evolutionary dynamics in wild populations have not been investigated in detail. In comprehensive analyses of selection, heritability, and genetic correlations, we found evidence for an ISC over wing length, a key trait for flight performance and migration, in a long-term study of wild great reed warblers (Acrocephalus arundinaceus). We found moderate sexual dimorphism, high heritability, moderate sexually antagonistic selection, and strong positive cross-sex genetic correlation in wing length, together supporting the presence of ISC. A negative genetic correlation between male wing length and female fitness indicated that females inheriting alleles for longer wings from their male relatives also inherited lower fitness. Moreover, cross-sex genetic correlations imposed constraint on the predicted microevolutionary trajectory of wing length (based on selection gradients), especially in females where the predicted response was reversed. The degree of sexual dimorphism in wing length did not change over time, suggesting no sign of conflict resolution. Our study provides novel insight into how an ISC over a fitness trait can affect microevolution in a wild population under natural selection.
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Affiliation(s)
- Maja Tarka
- Department of Biology, Lund University, SE-223 62 Lund, Sweden
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24
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Lemke HW, Tarka M, Klaassen RHG, Åkesson M, Bensch S, Hasselquist D, Hansson B. Annual cycle and migration strategies of a trans-Saharan migratory songbird: a geolocator study in the great reed warbler. PLoS One 2013; 8:e79209. [PMID: 24205374 PMCID: PMC3799637 DOI: 10.1371/journal.pone.0079209] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2013] [Accepted: 09/20/2013] [Indexed: 11/18/2022] Open
Abstract
Recent technological advancements now allow us to obtain geographical position data for a wide range of animal movements. Here we used light-level geolocators to study the annual migration cycle in great reed warblers (Acrocephalus arundinaceus), a passerine bird breeding in Eurasia and wintering in sub-Saharan Africa. We were specifically interested in seasonal strategies in routes and schedules of migration. We found that the great reed warblers (all males, no females were included) migrated from the Swedish breeding site in early August. After spending up to three weeks at scattered stopover sites in central to south-eastern Europe, they resumed migration and crossed the Mediterranean Sea and Sahara Desert without lengthy stopovers. They then spread out over a large overwintering area and each bird utilised two (or even three) main wintering sites that were spatially separated by a distinct mid-winter movement. Spring migration initiation date differed widely between individuals (1-27 April). Several males took a more westerly route over the Sahara in spring than in autumn, and in general there were fewer long-distance travels and more frequent shorter stopovers, including one in northern Africa, in spring. The shorter stopovers made spring migration on average faster than autumn migration. There was a strong correlation between the spring departure dates from wintering sites and the arrival dates at the breeding ground. All males had a high migration speed in spring despite large variation in departure dates, indicating a time-minimization strategy to achieve an early arrival at the breeding site; the latter being decisive for high reproductive success in great reed warblers. Our results have important implications for the understanding of long-distance migrants' ability to predict conditions at distant breeding sites and adapt to rapid environmental change.
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Affiliation(s)
- Hilger W. Lemke
- Molecular Ecology and Evolution Laboratory, Department of Biology, Lund University, Lund, Sweden
| | - Maja Tarka
- Molecular Ecology and Evolution Laboratory, Department of Biology, Lund University, Lund, Sweden
| | - Raymond H. G. Klaassen
- Montagu’s Harrier Foundation and Animal Ecology Group, Centre for Ecological and Evolutionary Studies, Groningen University, Groningen, Netherlands
| | - Mikael Åkesson
- Grimsö Wildlife Research Station, Department of Ecology, Swedish University of Agricultural Sciences, Riddarhyttan, Sweden
| | - Staffan Bensch
- Molecular Ecology and Evolution Laboratory, Department of Biology, Lund University, Lund, Sweden
| | - Dennis Hasselquist
- Molecular Ecology and Evolution Laboratory, Department of Biology, Lund University, Lund, Sweden
| | - Bengt Hansson
- Molecular Ecology and Evolution Laboratory, Department of Biology, Lund University, Lund, Sweden
- * E-mail:
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25
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Agostini M, Allardt M, Andreotti E, Bakalyarov AM, Balata M, Barabanov I, Barnabé Heider M, Barros N, Baudis L, Bauer C, Becerici-Schmidt N, Bellotti E, Belogurov S, Belyaev ST, Benato G, Bettini A, Bezrukov L, Bode T, Brudanin V, Brugnera R, Budjáš D, Caldwell A, Cattadori C, Chernogorov A, Cossavella F, Demidova EV, Domula A, Egorov V, Falkenstein R, Ferella A, Freund K, Frodyma N, Gangapshev A, Garfagnini A, Gotti C, Grabmayr P, Gurentsov V, Gusev K, Guthikonda KK, Hampel W, Hegai A, Heisel M, Hemmer S, Heusser G, Hofmann W, Hult M, Inzhechik LV, Ioannucci L, Janicskó Csáthy J, Jochum J, Junker M, Kihm T, Kirpichnikov IV, Kirsch A, Klimenko A, Knöpfle KT, Kochetov O, Kornoukhov VN, Kuzminov VV, Laubenstein M, Lazzaro A, Lebedev VI, Lehnert B, Liao HY, Lindner M, Lippi I, Liu X, Lubashevskiy A, Lubsandorzhiev B, Lutter G, Macolino C, Machado AA, Majorovits B, Maneschg W, Misiaszek M, Nemchenok I, Nisi S, O'Shaughnessy C, Pandola L, Pelczar K, Pessina G, Pullia A, Riboldi S, Rumyantseva N, Sada C, Salathe M, Schmitt C, Schreiner J, Schulz O, Schwingenheuer B, Schönert S, Shevchik E, Shirchenko M, Simgen H, Smolnikov A, Stanco L, Strecker H, Tarka M, Ur CA, Vasenko AA, Volynets O, von Sturm K, Wagner V, Walter M, Wegmann A, Wester T, Wojcik M, Yanovich E, Zavarise P, Zhitnikov I, Zhukov SV, Zinatulina D, Zuber K, Zuzel G. Results on neutrinoless double-β decay of 76Ge from phase I of the GERDA experiment. Phys Rev Lett 2013; 111:122503. [PMID: 24093254 DOI: 10.1103/physrevlett.111.122503] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Indexed: 06/02/2023]
Abstract
Neutrinoless double beta decay is a process that violates lepton number conservation. It is predicted to occur in extensions of the standard model of particle physics. This Letter reports the results from phase I of the Germanium Detector Array (GERDA) experiment at the Gran Sasso Laboratory (Italy) searching for neutrinoless double beta decay of the isotope (76)Ge. Data considered in the present analysis have been collected between November 2011 and May 2013 with a total exposure of 21.6 kg yr. A blind analysis is performed. The background index is about 1 × 10(-2) counts/(keV kg yr) after pulse shape discrimination. No signal is observed and a lower limit is derived for the half-life of neutrinoless double beta decay of (76)Ge, T(1/2)(0ν) >2.1 × 10(25) yr (90% C.L.). The combination with the results from the previous experiments with (76)Ge yields T(1/2)(0ν)>3.0 × 10(25) yr (90% C.L.).
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Affiliation(s)
- M Agostini
- Physik Department and Excellence Cluster Universe, Technische Universität München, Germany
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26
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Hansson B, Tarka M, Dawson DA, Horsburgh GJ. Hybridization but no evidence for backcrossing and introgression in a sympatric population of great reed warblers and clamorous reed warblers. PLoS One 2012; 7:e31667. [PMID: 22384052 PMCID: PMC3288047 DOI: 10.1371/journal.pone.0031667] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2011] [Accepted: 01/16/2012] [Indexed: 11/18/2022] Open
Abstract
Hybridization is observed frequently in birds, but often it is not known whether the hybrids are fertile and if backcrossing occurs. The breeding ranges of the great reed warbler (Acrocephalus arundinaceus) and the clamorous reed warbler (A. stentoreus) overlap in southern Kazakhstan and a previous study has documented hybridization in a sympatric population. In the present study, we first present a large set of novel microsatellite loci isolated and characterised in great reed warblers. Secondly, we evaluate whether hybridization in the sympatric breeding population has been followed by backcrossing and introgression.We isolated 181 unique microsatellite loci in great reed warblers. Of 41 loci evaluated, 40 amplified and 30 were polymorphic. Bayesian clustering analyses based on genotype data from 23 autosomal loci recognised two well-defined genetic clusters corresponding to the two species. Individuals clustered to a very high extent to either of these clusters (admixture proportions ≥ 0.984) with the exception of four previously suggested arundinaceus-stentoreus hybrid birds that showed mixed ancestry (admixture proportions 0.495-0.619). Analyses of simulated hybrids and backcrossed individuals showed that the sampled birds do not correspond to first-fourth-generation backcrosses, and that fifth or higher generation backcrosses to a high extent resemble 'pure' birds at this set of markers.We conclude that these novel microsatellite loci provide a useful molecular resource for Acrocephalus warblers. The time to reach reproductive isolation is believed to be very long in birds, approximately 5 Myrs, and with an estimated divergence time of 2 Myrs between these warblers, some backcrossing and introgression could have been expected. However, there was no evidence for backcrossing and introgression suggesting that hybrids are either infertile or their progeny inviable. Very low levels of introgression cannot be excluded, which still may be an important factor as a source of new genetic variation.
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Affiliation(s)
- Bengt Hansson
- Department of Biology, Lund University, Lund, Sweden.
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27
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Ahmed Z, Akerib DS, Arrenberg S, Bailey CN, Balakishiyeva D, Baudis L, Bauer DA, Brink PL, Bruch T, Bunker R, Cabrera B, Caldwell DO, Cooley J, do Couto e Silva E, Cushman P, Daal M, DeJongh F, Di Stefano P, Dragowsky MR, Duong L, Fallows S, Figueroa-Feliciano E, Filippini J, Fox J, Fritts M, Golwala SR, Hall J, Hennings-Yeomans R, Hertel SA, Holmgren D, Hsu L, Huber ME, Kamaev O, Kiveni M, Kos M, Leman SW, Liu S, Mahapatra R, Mandic V, McCarthy KA, Mirabolfathi N, Moore D, Nelson H, Ogburn RW, Phipps A, Pyle M, Qiu X, Ramberg E, Rau W, Reisetter A, Resch R, Saab T, Sadoulet B, Sander J, Schnee RW, Seitz DN, Serfass B, Sundqvist KM, Tarka M, Wikus P, Yellin S, Yoo J, Young BA, Zhang J. Results from a low-energy analysis of the CDMS II germanium data. Phys Rev Lett 2011; 106:131302. [PMID: 21517371 DOI: 10.1103/physrevlett.106.131302] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2010] [Indexed: 05/30/2023]
Abstract
We report results from a reanalysis of data from the Cryogenic Dark Matter Search (CDMS II) experiment at the Soudan Underground Laboratory. Data taken between October 2006 and September 2008 using eight germanium detectors are reanalyzed with a lowered, 2 keV recoil-energy threshold, to give increased sensitivity to interactions from weakly interacting massive particles (WIMPs) with masses below ∼10 GeV/c(2). This analysis provides stronger constraints than previous CDMS II results for WIMP masses below 9 GeV/c(2) and excludes parameter space associated with possible low-mass WIMP signals from the DAMA/LIBRA and CoGeNT experiments.
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Affiliation(s)
- Z Ahmed
- Division of Physics, Mathematics & Astronomy, California Institute of Technology, Pasadena, California 91125, USA
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28
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Tarka M, Akesson M, Beraldi D, Hernández-Sánchez J, Hasselquist D, Bensch S, Hansson B. A strong quantitative trait locus for wing length on chromosome 2 in a wild population of great reed warblers. Proc Biol Sci 2010; 277:2361-9. [PMID: 20335216 DOI: 10.1098/rspb.2010.0033] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
Wing length is a key character for essential behaviours related to bird flight such as migration and foraging. In the present study, we initiate the search for the genes underlying wing length in birds by studying a long-distance migrant, the great reed warbler (Acrocephalus arundinaceus). In this species wing length is an evolutionary interesting trait with pronounced latitudinal gradient and sex-specific selection regimes in local populations. We performed a quantitative trait locus (QTL) scan for wing length in great reed warblers using phenotypic, genotypic, pedigree and linkage map data from our long-term study population in Sweden. We applied the linkage analysis mapping method implemented in GridQTL (a new web-based software) and detected a genome-wide significant QTL for wing length on chromosome 2, to our knowledge, the first detected QTL in wild birds. The QTL extended over 25 cM and accounted for a substantial part (37%) of the phenotypic variance of the trait. A genome scan for tarsus length (a body-size-related trait) did not show any signal, implying that the wing-length QTL on chromosome 2 was not associated with body size. Our results provide a first important step into understanding the genetic architecture of avian wing length, and give opportunities to study the evolutionary dynamics of wing length at the locus level.
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Affiliation(s)
- Maja Tarka
- Section for Animal Ecology, Department of Biology, Lund University, 223 62 Lund, Sweden
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29
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Ahmed Z, Akerib DS, Arrenberg S, Bailey CN, Balakishiyeva D, Baudis L, Bauer DA, Beaty J, Brink PL, Bruch T, Bunker R, Cabrera B, Caldwell DO, Cooley J, Cushman P, Dejongh F, Dragowsky MR, Duong L, Figueroa-Feliciano E, Filippini J, Fritts M, Golwala SR, Grant DR, Hall J, Hennings-Yeomans R, Hertel S, Holmgren D, Hsu L, Huber ME, Kamaev O, Kiveni M, Kos M, Leman SW, Mahapatra R, Mandic V, Moore D, McCarthy KA, Mirabolfathi N, Nelson H, Ogburn RW, Pyle M, Qiu X, Ramberg E, Rau W, Reisetter A, Saab T, Sadoulet B, Sander J, Schnee RW, Seitz DN, Serfass B, Sundqvist KM, Tarka M, Wang G, Yellin S, Yoo J, Young BA. Search for axions with the CDMS experiment. Phys Rev Lett 2009; 103:141802. [PMID: 19905561 DOI: 10.1103/physrevlett.103.141802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2009] [Indexed: 05/28/2023]
Abstract
We report on the first axion search results from the Cryogenic Dark Matter Search (CDMS) experiment at the Soudan Underground Laboratory. An energy threshold of 2 keV for electron-recoil events allows a search for possible solar axion conversion into photons or local galactic axion conversion into electrons in the germanium crystal detectors. The solar axion search sets an upper limit on the Primakov coupling g(agammagamma) of 2.4x10(-9) GeV-1 at the 95% confidence level for an axion mass less than 0.1 keV/c2. This limit benefits from the first precise measurement of the absolute crystal plane orientations in this type of experiment. The galactic axion search analysis sets a world-leading experimental upper limit on the axioelectric coupling g(aee) of 1.4x10(-12) at the 90% confidence level for an axion mass of 2.5 keV/c2.
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Affiliation(s)
- Z Ahmed
- Department of Physics, California Institute of Technology, Pasadena, California 91125, USA
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30
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Ahmed Z, Akerib DS, Arrenberg S, Attisha MJ, Bailey CN, Baudis L, Bauer DA, Beaty J, Brink PL, Bruch T, Bunker R, Burke S, Cabrera B, Caldwell DO, Cooley J, Cushman P, Dejongh F, Dragowsky MR, Duong L, Emes J, Figueroa-Feliciano E, Filippini J, Fritts M, Gaitskell RJ, Golwala SR, Grant DR, Hall J, Hennings-Yeomans R, Hertel S, Holmgren D, Huber ME, Mahapatra R, Mandic V, McCarthy KA, Mirabolfathi N, Nelson H, Novak L, Ogburn RW, Pyle M, Qiu X, Ramberg E, Rau W, Reisetter A, Saab T, Sadoulet B, Sander J, Schmitt R, Schnee RW, Seitz DN, Serfass B, Sirois A, Sundqvist KM, Tarka M, Tomada A, Wang G, Yellin S, Yoo J, Young BA. Search for weakly interacting massive particles with the first five-tower data from the cryogenic dark matter search at the soudan underground laboratory. Phys Rev Lett 2009; 102:011301. [PMID: 19257177 DOI: 10.1103/physrevlett.102.011301] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2008] [Indexed: 05/27/2023]
Abstract
We report results from the Cryogenic Dark Matter Search at the Soudan Underground Laboratory (CDMS II) featuring the full complement of 30 detectors. A blind analysis of data taken between October 2006 and July 2007 sets an upper limit on the weakly interacting massive particle (WIMP) nucleon spin-independent cross section of 6.6x10;{-44} cm;{2} (4.6x10;{-44} cm;{2} when combined with previous CDMS II data) at the 90% confidence level for a WIMP mass of 60 GeV/c;{2}. This achieves the best sensitivity for dark matter WIMPs with masses above 44 GeV/c;{2}, and significantly restricts the parameter space for some favored supersymmetric models.
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Affiliation(s)
- Z Ahmed
- Department of Physics, California Institute of Technology, Pasadena, California 91125, USA
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31
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Hansson B, Hasselquist D, Tarka M, Zehtindjiev P, Bensch S. Postglacial colonisation patterns and the role of isolation and expansion in driving diversification in a passerine bird. PLoS One 2008; 3:e2794. [PMID: 18665223 PMCID: PMC2467487 DOI: 10.1371/journal.pone.0002794] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2008] [Accepted: 06/25/2008] [Indexed: 11/19/2022] Open
Abstract
Pleistocene glacial cycles play a major role in diversification and speciation, although the relative importance of isolation and expansion in driving diversification remains debated. We analysed mitochondrial DNA sequence data from 15 great reed warbler (Acrocephalus arundinaceus) populations distributed over the vast Eurasian breeding range of the species, and revealed unexpected postglacial expansion patterns from two glacial refugia. There were 58 different haplotypes forming two major clades, A and B. Clade A dominated in Western Europe with declining frequencies towards Eastern Europe and the Middle East, but showed a surprising increase in frequency in Western and Central Asia. Clade B dominated in the Middle East, with declining frequencies towards north in Central and Eastern Europe and was absent from Western Europe and Central Asia. A parsimonious explanation for these patterns is independent postglacial expansions from two isolated refugia, and mismatch distribution analyses confirmed this suggestion. Gene flow analyses showed that clade A colonised both Europe and Asia from a refugium in Europe, and that clade B expanded much later and colonised parts of Europe from a refugium in the Middle East. Great reed warblers in the eastern parts of the range have slightly paler plumage than western birds (sometimes treated as separate subspecies; A. a. zarudnyi and A. a. arundinaceus, respectively) and our results suggest that the plumage diversification took place during the easterly expansion of clade A. This supports the postglacial expansion hypothesis proposing that postglacial expansions drive diversification in comparatively short time periods. However, there is no indication of any (strong) reproductive isolation between clades and our data show that the refugia populations became separated during the last glaciation. This is in line with the Pleistocene speciation hypothesis invoking that much longer periods of time in isolation are needed for speciation to occur.
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Affiliation(s)
- Bengt Hansson
- Department of Animal Ecology, Lund University, Ecology Building, Lund, Sweden.
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32
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Akesson M, Bensch S, Hasselquist D, Tarka M, Hansson B. Estimating heritabilities and genetic correlations: comparing the 'animal model' with parent-offspring regression using data from a natural population. PLoS One 2008; 3:e1739. [PMID: 18320057 PMCID: PMC2254494 DOI: 10.1371/journal.pone.0001739] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2007] [Accepted: 01/29/2008] [Indexed: 11/17/2022] Open
Abstract
Quantitative genetic parameters are nowadays more frequently estimated with restricted maximum likelihood using the 'animal model' than with traditional methods such as parent-offspring regressions. These methods have however rarely been evaluated using equivalent data sets. We compare heritabilities and genetic correlations from animal model and parent-offspring analyses, respectively, using data on eight morphological traits in the great reed warbler (Acrocephalus arundinaceus). Animal models were run using either mean trait values or individual repeated measurements to be able to separate between effects of including more extended pedigree information and effects of replicated sampling from the same individuals. We show that the inclusion of more pedigree information by the use of mean traits animal models had limited effect on the standard error and magnitude of heritabilities. In contrast, the use of repeated measures animal model generally had a positive effect on the sampling accuracy and resulted in lower heritabilities; the latter due to lower additive variance and higher phenotypic variance. For most trait combinations, both animal model methods gave genetic correlations that were lower than the parent-offspring estimates, whereas the standard errors were lower only for the mean traits animal model. We conclude that differences in heritabilities between the animal model and parent-offspring regressions were mostly due to the inclusion of individual replicates to the animal model rather than the inclusion of more extended pedigree information. Genetic correlations were, on the other hand, primarily affected by the inclusion of more pedigree information. This study is to our knowledge the most comprehensive empirical evaluation of the performance of the animal model in relation to parent-offspring regressions in a wild population. Our conclusions should be valuable for reconciliation of data obtained in earlier studies as well as for future meta-analyses utilizing estimates from both traditional methods and the animal model.
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Affiliation(s)
- Mikael Akesson
- Department of Animal Ecology, Lund University, Lund, Sweden.
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Tarka M. Approaches to the Validation of Derivatized Multicomponent Analysis by GLC. ANAL LETT 1986. [DOI: 10.1080/00032718608064517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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