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Naskar M, Parekh VP, Abraham MA, Alibasic Z, Kim MJ, Suk G, Noh JH, Ko KY, Lee J, Kim C, Yoon H, Abraham SN, Choi HW. α-Hemolysin promotes uropathogenic E. coli persistence in Bladder epithelial cells Via abrogating bacteria-harboring lysosome acidification. PLoS Pathog 2023; 19:e1011388. [PMID: 37167325 DOI: 10.1371/journal.ppat.1011388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 05/23/2023] [Accepted: 04/25/2023] [Indexed: 05/13/2023] Open
Abstract
There is a growing consensus that a significant proportion of recurrent urinary tract infections are linked to the persistence of uropathogens within the urinary tract and their re-emergence upon the conclusion of antibiotic treatment. Studies in mice and human have revealed that uropathogenic Escherichia coli (UPEC) can persist in bladder epithelial cells (BECs) even after the apparent resolution of the infection. Here, we found that, following the entry of UPEC into RAB27b+ fusiform vesicles in BECs, some bacteria escaped into the cytoplasmic compartment via a mechanism involving hemolysin A (HlyA). However, these UPEC were immediately recaptured within LC3A/B+ autophagosomes that matured into LAMP1+ autolysosomes. Thereafter, HlyA+ UPEC-containing lysosomes failed to acidify, which is an essential step for bacterial elimination. This lack of acidification was related to the inability of bacteria-harboring compartments to recruit V-ATPase proton pumps, which was attributed to the defragmentation of cytosolic microtubules by HlyA. The persistence of UPEC within LAMP1+ compartments in BECs appears to be directly linked to HlyA. Thus, through intravesicular instillation of microtubule stabilizer, this host defense response can be co-opted to reduce intracellular bacterial burden following UTIs in the bladder potentially preventing recurrence.
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Affiliation(s)
- Manisha Naskar
- Division of Life Sciences, Korea University, Seoul, South Korea
| | - Viraj P Parekh
- Department of Biochemistry, Duke University Medical Center, Durham, North Carolina, United States of America
| | - Mathew A Abraham
- Department of Pathology, Duke University Medical Center, Durham, North Carolina, United States of America
| | - Zehra Alibasic
- Division of Life Sciences, Korea University, Seoul, South Korea
| | - Min Jung Kim
- Division of Life Sciences, Korea University, Seoul, South Korea
| | - Gyeongseo Suk
- Division of Life Sciences, Korea University, Seoul, South Korea
| | - Joo Hwan Noh
- Division of Life Sciences, Korea University, Seoul, South Korea
| | - Kwan Young Ko
- Center for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts, United States of America
| | - Joonha Lee
- Division of Life Sciences, Korea University, Seoul, South Korea
| | - Chungho Kim
- Division of Life Sciences, Korea University, Seoul, South Korea
| | - Hana Yoon
- Department of Urology, Ewha Womans University, College of medicine, Seoul, South Korea
| | - Soman N Abraham
- Department of Pathology, Duke University Medical Center, Durham, North Carolina, United States of America
- Department of Immunology, Duke University Medical Center, Durham, North Carolina, United States of America
- Molecular Genetics & Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America
| | - Hae Woong Choi
- Division of Life Sciences, Korea University, Seoul, South Korea
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Song CH, Kim YH, Naskar M, Hayes BW, Abraham MA, Noh JH, Suk G, Kim MJ, Cho KS, Shin M, Lee EJ, Abraham SN, Choi HW. Lactobacillus crispatus Limits Bladder Uropathogenic E. coli Infection by Triggering a Host Type I Interferon Response. Proc Natl Acad Sci U S A 2022; 119:e2117904119. [PMID: 35939684 PMCID: PMC9388105 DOI: 10.1073/pnas.2117904119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
Many urinary tract infections (UTIs) are recurrent because uropathogens persist within the bladder epithelial cells (BECs) for extended periods between bouts of infection. Because persistent uropathogens are intracellular, they are often refractive to antibiotic treatment. The recent discovery of endogenous Lactobacillus spp. in the bladders of healthy humans raised the question of whether these endogenous bacteria directly or indirectly impact intracellular bacterial burden in the bladder. Here, we report that in contrast to healthy women, female patients experiencing recurrent UTIs have a bladder population of Lactobacilli that is markedly reduced. Exposing infected human BECs to L. crispatus in vitro markedly reduced the intracellular uropathogenic Escherichia coli (UPEC) load. The adherence of Lactobacilli to BECs was found to result in increased type I interferon (IFN) production, which in turn enhanced the expression of cathepsin D within lysosomes harboring UPECs. This lysosomal cathepsin D-mediated UPEC killing was diminished in germ-free mice and type I IFN receptor-deficient mice. Secreted metabolites of L. crispatus seemed to be responsible for the increased expression of type I IFN in human BECs. Intravesicular administration of Lactobacilli into UPEC-infected murine bladders markedly reduced their intracellular bacterial load suggesting that components of the endogenous microflora can have therapeutic effects against UTIs.
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Affiliation(s)
- Chang Hyun Song
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
| | - Young Ho Kim
- Department of Urology, Soonchunhyang University Bucheon Hospital, Bucheon-si, 14584, South Korea
| | - Manisha Naskar
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
| | - Byron W Hayes
- Department of Pathology, Duke University Medical Center, Durham, NC 27710
| | - Mathew A Abraham
- Department of Pathology, Duke University Medical Center, Durham, NC 27710
| | - Joo Hwan Noh
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
| | - Gyeongseo Suk
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
| | - Min Jung Kim
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
| | - Kyu Sang Cho
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
| | - Minhye Shin
- Department of Microbiology, Inha University School of Medicine, Incheon, 22212, South Korea
| | - Eun-Jin Lee
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
| | - Soman N Abraham
- Department of Pathology, Duke University Medical Center, Durham, NC 27710
- Department of Immunology, Duke University Medical Center, Durham, NC 27710
- Molecular Genetics & Microbiology, Duke University Medical Center, Durham, NC 27710
| | - Hae Woong Choi
- Division of Life Sciences, Korea University, Seoul, 02841, South Korea
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Ganguli B, Roy SS, Naskar M, Malloy EJ, Eisen EA. Deletion diagnostics for the generalised linear mixed model with independent random effects. Stat Med 2016; 35:1488-501. [PMID: 26626135 DOI: 10.1002/sim.6810] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2013] [Revised: 10/05/2015] [Accepted: 10/17/2015] [Indexed: 11/05/2022]
Abstract
The Generalised linear mixed model (GLMM) is widely used for modelling environmental data. However, such data are prone to influential observations, which can distort the estimated exposure-response curve particularly in regions of high exposure. Deletion diagnostics for iterative estimation schemes commonly derive the deleted estimates based on a single iteration of the full system holding certain pivotal quantities such as the information matrix to be constant. In this paper, we present an approximate formula for the deleted estimates and Cook's distance for the GLMM, which does not assume that the estimates of variance parameters are unaffected by deletion. The procedure allows the user to calculate standardised DFBETAs for mean as well as variance parameters. In certain cases such as when using the GLMM as a device for smoothing, such residuals for the variance parameters are interesting in their own right. In general, the procedure leads to deleted estimates of mean parameters, which are corrected for the effect of deletion on variance components as estimation of the two sets of parameters is interdependent. The probabilistic behaviour of these residuals is investigated and a simulation based procedure suggested for their standardisation. The method is used to identify influential individuals in an occupational cohort exposed to silica. The results show that failure to conduct post model fitting diagnostics for variance components can lead to erroneous conclusions about the fitted curve and unstable confidence intervals.
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Affiliation(s)
- B Ganguli
- Department of Statistics, University of Calcutta, Kolkata, India
| | - S Sen Roy
- Department of Statistics, University of Calcutta, Kolkata, India
| | - M Naskar
- ICAR-Central Inland Fisheries Research Institute, India
| | - E J Malloy
- Department of Mathematics and Statistics, American University, Washington DC, WA, U.S.A
| | - E A Eisen
- Department of Environmental Health Sciences, University of California, Berkeley, UC, U.S.A
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Pandey RK, Narula A, Naskar M, Srivastava S, Verma P, Malik R, Shah P, Prajapati VK. Exploring dual inhibitory role of febrifugine analogues against Plasmodium utilizing structure-based virtual screening and molecular dynamic simulation. J Biomol Struct Dyn 2016; 35:791-804. [DOI: 10.1080/07391102.2016.1161560] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Rajan Kumar Pandey
- Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Kishangarh, Ajmer 305817, Rajasthan, India
| | - Aruna Narula
- Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Kishangarh, Ajmer 305817, Rajasthan, India
| | - Manisha Naskar
- Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Kishangarh, Ajmer 305817, Rajasthan, India
| | - Shubham Srivastava
- Department of Pharmacy, School of Chemical Sciences, Central University of Rajasthan, Kishangarh, Ajmer 305817, Rajasthan, India
| | - Parmila Verma
- Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Kishangarh, Ajmer 305817, Rajasthan, India
| | - Ruchi Malik
- Department of Pharmacy, School of Chemical Sciences, Central University of Rajasthan, Kishangarh, Ajmer 305817, Rajasthan, India
| | - Priyanka Shah
- Department of Bioscience & Biotechnology, Banasthali University, Jaipur 304022, India
| | - Vijay Kumar Prajapati
- Department of Biochemistry, School of Life Sciences, Central University of Rajasthan, Kishangarh, Ajmer 305817, Rajasthan, India
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Ganguli B, Naskar M, Malloy E, Eisen E. Determination of the functional form of the relationship of covariates to the log hazard ratio in a Cox model. J Appl Stat 2015. [DOI: 10.1080/02664763.2014.995607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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