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França DAD, Silva FPD, Zanini DDS, Iglesias L, Portillo L, Cortez H, Biondo AW, Duré AÍDL, Silva MVF, Miret J, Langoni H. Coxiella burnetii seroprevalence in sheep herd from Paraguay: First evidence of bacterial circulation in the country. One Health 2024; 18:100660. [PMID: 38179312 PMCID: PMC10765107 DOI: 10.1016/j.onehlt.2023.100660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Accepted: 12/06/2023] [Indexed: 01/06/2024] Open
Abstract
Coxiella burnetii is the agent of Q fever, a disease that poses risks to public health and damages livestock. We discovered the circulation of C. burnetii for the first time in Paraguay, based on the seropositivity of a flock of >300 sheep. The animals were tested by IFA for anti-C. burnetii antibodies and by SAM for anti-Leptospira spp. antibodies, an important differential diagnosis for reproductive disorders in sheep in Paraguay. C. burnetii seropositivity was determined in 45%, in contrast to Leptospira spp. which had no reactive samples. Cases of miscarriage and fetal resorption were associated with high seropositivity titers. This study suggests the circulation of a unique genotype in the country and an imminent risk to public health, since in addition to being highly transmissible and infectious to humans, Q fever is still not a cause for concern on the part of government and health agencies in the country.
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Affiliation(s)
- Danilo Alves de França
- São Paulo State University, Prof. Doutor Walter Mauricio Correa, s/n, Unesp Campus de Botucatu, Botucatu, São Paulo 18618-681, Brazil
| | - Filipe Pereira da Silva
- Octavio Magalhaes Institute, Prof. Octavio Coelho De Magalhaes, s/n, Fundação Ezequiel Dias, Belo Horizonte 30210-290, Minas Gerais, Brazil
| | - Dayane da Silva Zanini
- São Paulo State University, Prof. Doutor Walter Mauricio Correa, s/n, Unesp Campus de Botucatu, Botucatu, São Paulo 18618-681, Brazil
| | - Lorena Iglesias
- Universidad Nacional de Canindeyú, Calle Itambey, Curuguaty 140802, Paraguay
| | - Laura Portillo
- Universidad Nacional de Canindeyú, Calle Itambey, Curuguaty 140802, Paraguay
| | - Herminia Cortez
- Universidad Nacional de Canindeyú, Calle Itambey, Curuguaty 140802, Paraguay
| | | | - Ana Íris de Lima Duré
- Octavio Magalhaes Institute, Prof. Octavio Coelho De Magalhaes, s/n, Fundação Ezequiel Dias, Belo Horizonte 30210-290, Minas Gerais, Brazil
| | - Marcos Vinicius Ferreira Silva
- Octavio Magalhaes Institute, Prof. Octavio Coelho De Magalhaes, s/n, Fundação Ezequiel Dias, Belo Horizonte 30210-290, Minas Gerais, Brazil
| | - Jorge Miret
- Universidad Nacional de Canindeyú, Calle Itambey, Curuguaty 140802, Paraguay
| | - Helio Langoni
- São Paulo State University, Prof. Doutor Walter Mauricio Correa, s/n, Unesp Campus de Botucatu, Botucatu, São Paulo 18618-681, Brazil
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de França DA, Kmetiuk LB, Panazzolo GAK, Domingues OJ, da Silva FP, Biondo LM, de Souza Ribeiro Mioni M, Possebon FS, de Lima Duré AÍ, Silva MVF, Duarte MM, Fávero GM, Biondo AW, Langoni H. Serosurvey of Coxiella burnetii in Descendants of Former Black Slaves (Quilombola Communities) of Southern Brazil. Microorganisms 2024; 12:92. [PMID: 38257919 PMCID: PMC10819991 DOI: 10.3390/microorganisms12010092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 09/22/2023] [Accepted: 09/27/2023] [Indexed: 01/24/2024] Open
Abstract
Brazilian descendants of former Black-slave (quilombola) communities have been predisposed to several zoonotic diseases due to social vulnerability, characterized by subsistence and close contact with livestock and companion animals. Accordingly, the present study has assessed anti-Coxiella burnetii antibodies in 200 individuals and 20 dogs from four quilombola communities located in Paraná State, southern Brazil. Serum samples were tested by indirect immunofluorescence assay (IFA) using in-house and commercial diagnostic protocols, with analysis of seropositive titers and antibody type. Fisher's exact test was used to compare seropositivity to C. burnetti with binary variables, with variables with three or more possible responses submitted to logistic regression. In total, 44/200 (22%; 95% CI 16.82-28.24) people tested positive, and 4.5% had titers higher than 128, indicating a recent onset of C. burnetii infection. Seropositive individuals were statistically associated with the Limitão community (p = 0.0013), urban workers as occupations (p = 0.0475), consumption of undercooked meat (p = 0.0159), and contact with animal abortion (p = 0.0276). No seropositivity association was found for age, sex, education, habit of entering forest areas, consumption of game meat, consumption of raw milk, flea and tick bites, dog contact, or history of female miscarriage. Only one of 20 dogs was seropositive with a titer of 128, probably related to an acute animal infection. Despite the prevalence here being higher than previous Brazilian reports, including with symptomatic populations, the results were within range for worldwide outbreaks and occupational risk populations. To the reader's knowledge, this is the first human survey of Q fever in southern Brazil and should be considered a warning for C. burnetii in vulnerable populations, particularly Quilombola communities.
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Affiliation(s)
- Danilo Alves de França
- Department of Animal Production and Preventive Veterinary Medicine, School of Veterinary Medicine and Animals Science, São Paulo State University, Botucatu 18618-681, SP, Brazil; (D.A.d.F.); (F.S.P.)
| | - Louise Bach Kmetiuk
- Department of Veterinary Medicine, Federal University of Paraná State, Curitiba 80035-050, PR, Brazil; (L.B.K.); (A.W.B.)
| | - Giovanni Augusto Kalempa Panazzolo
- Graduate College of Pharmaceutical Sciences, State University of Ponta Grossa, Ponta Grossa 84030-900, PR, Brazil; (G.A.K.P.); (O.J.D.); (G.M.F.)
| | - Orlei José Domingues
- Graduate College of Pharmaceutical Sciences, State University of Ponta Grossa, Ponta Grossa 84030-900, PR, Brazil; (G.A.K.P.); (O.J.D.); (G.M.F.)
| | - Filipe Pereira da Silva
- Service of Virology and Rickettsiosis, Octavio Magalhaes Institute, Ezequiel Dias Foundation, Belo Horizonte 30510-010, MG, Brazil; (F.P.d.S.); (A.Í.d.L.D.); (M.V.F.S.); (M.M.D.)
| | - Leandro Meneguelli Biondo
- National Institute of the Atlantic Forest (INMA), Brazilian Ministry of Science, Technology and Innovation, Santa Teresa 29650-000, ES, Brazil;
- Interdisciplinary Graduate Studies, University of British Columbia, Kelowna, BC V1V 1V7, Canada
| | - Mateus de Souza Ribeiro Mioni
- Department of Pathology, Reproduction and One Health, Faculty of Agricultural and Veterinary Sciences, São Paulo State University, Jaboticabal 14884-900, SP, Brazil;
| | - Fábio Sossai Possebon
- Department of Animal Production and Preventive Veterinary Medicine, School of Veterinary Medicine and Animals Science, São Paulo State University, Botucatu 18618-681, SP, Brazil; (D.A.d.F.); (F.S.P.)
| | - Ana Íris de Lima Duré
- Service of Virology and Rickettsiosis, Octavio Magalhaes Institute, Ezequiel Dias Foundation, Belo Horizonte 30510-010, MG, Brazil; (F.P.d.S.); (A.Í.d.L.D.); (M.V.F.S.); (M.M.D.)
| | - Marcos Vinicius Ferreira Silva
- Service of Virology and Rickettsiosis, Octavio Magalhaes Institute, Ezequiel Dias Foundation, Belo Horizonte 30510-010, MG, Brazil; (F.P.d.S.); (A.Í.d.L.D.); (M.V.F.S.); (M.M.D.)
| | - Myrian Morato Duarte
- Service of Virology and Rickettsiosis, Octavio Magalhaes Institute, Ezequiel Dias Foundation, Belo Horizonte 30510-010, MG, Brazil; (F.P.d.S.); (A.Í.d.L.D.); (M.V.F.S.); (M.M.D.)
| | - Giovani Marino Fávero
- Graduate College of Pharmaceutical Sciences, State University of Ponta Grossa, Ponta Grossa 84030-900, PR, Brazil; (G.A.K.P.); (O.J.D.); (G.M.F.)
| | - Alexander Welker Biondo
- Department of Veterinary Medicine, Federal University of Paraná State, Curitiba 80035-050, PR, Brazil; (L.B.K.); (A.W.B.)
| | - Helio Langoni
- Department of Animal Production and Preventive Veterinary Medicine, School of Veterinary Medicine and Animals Science, São Paulo State University, Botucatu 18618-681, SP, Brazil; (D.A.d.F.); (F.S.P.)
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França DAD, Mioni MDSR, Fornazari F, Rodrigues NJL, Polido LRF, Appolinario CM, Ribeiro BLD, Duré AÍDL, Silva MVF, Richini-Pereira VB, Langoni H, Megid J. Comparison of Three Serologic Tests for the Detection of Anti- Coxiella burnetii Antibodies in Patients with Q Fever. Pathogens 2023; 12:873. [PMID: 37513720 PMCID: PMC10386034 DOI: 10.3390/pathogens12070873] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/20/2023] [Accepted: 06/22/2023] [Indexed: 07/30/2023] Open
Abstract
The performance of a commercial immunofluorescence assay (IFA commercial), an in-house immunofluorescence assay (IFA in-house) and an indirect enzyme-linked immunosorbent assay (ELISA) were evaluated in the detection of antibodies anti-C. burnetii in the serum of Q fever patients and persons without the disease. For the study, seropositive and seronegative samples for Q fever (n = 200) from a serum bank of the Instituto Adolfo Lutz in Brazil were used. Commercial IFA was considered in this study as the gold standard for diagnosing Q fever. The in-house IFA demonstrated good agreement with the commercial test, showing high sensitivity (91%) and specificity (97%) compared to the gold standard, with a Kappa coefficient of 0.8954. The indirect ELISA test showed lower agreement with the gold standard, showing low sensitivity (67%), although the specificity of the technique was high (97%) and the Kappa coefficient was moderate (0.6631). In-house IFA is an excellent alternative for diagnosing Q fever.
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Affiliation(s)
- Danilo Alves de França
- Department of Veterinary Hygiene and Public Health, São Paulo State University, Botucatu 05508-220, Brazil
| | | | - Felipe Fornazari
- Department of Veterinary Hygiene and Public Health, São Paulo State University, Botucatu 05508-220, Brazil
| | | | | | - Camila Michele Appolinario
- Department of Veterinary Hygiene and Public Health, São Paulo State University, Botucatu 05508-220, Brazil
| | | | - Ana Íris de Lima Duré
- Ezequiel Dias Foundation, Otávio Magalhães Institute, Belo Horizonte 30510-010, Brazil
| | | | | | - Helio Langoni
- Department of Veterinary Hygiene and Public Health, São Paulo State University, Botucatu 05508-220, Brazil
| | - Jane Megid
- Department of Veterinary Hygiene and Public Health, São Paulo State University, Botucatu 05508-220, Brazil
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França DAD, Mioni MDSR, Fernandes J, Lemos ERSD, Duré AÍDL, Silva MVF, Langoni H, Megid J. Overview of Q fever in Brazil: an underestimated zoonosis. Rev Inst Med Trop Sao Paulo 2023; 65:e39. [PMID: 37377322 DOI: 10.1590/s1678-9946202365039] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 04/25/2023] [Indexed: 06/29/2023] Open
Abstract
This review aims to provide current information about Q fever, elucidating the etiological, epidemiological, pathogenic, clinical, diagnostic, therapeutic, and prophylactic aspects of the disease for the medical community. We discuss the main forms of presentation of the agent, its ability to persist in the body, the infinite possibilities of susceptible hosts, the main known forms of transmission, its importance in populations at occupational risk, and the role of arthropods in the natural history of the disease. Focusing on Brazil, we present the cases already described and studies developed since its first report, and how there is still much to unravel. We are aware of the possibilities of the persistence of the agent and the development of severe clinical pictures and the specific treatments currently instituted. We also wish to raise awareness about the future, the new genotypes that are emerging, the need to study the effects of vaccines, and the impact of Q fever on the population. Q fever is a poorly understood disease in Latin America, and recent studies, especially in Brazil, have revealed the importance of developing new studies.
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Affiliation(s)
- Danilo Alves de França
- Universidade Estadual Paulista, Departamento de Higiene Veterinária e Saúde Pública, Botucatu, São Paulo, Brazil
| | | | - Jorlan Fernandes
- Instituto Oswaldo Cruz, Laboratório de Hantaviroses e Rickettsioses, Rio de Janeiro, Rio de Janeiro, Brazil
| | | | - Ana Íris de Lima Duré
- Fundação Ezequiel Dias, Instituto Otávio Magalhães, Belo Horizonte, Minas Gerais, Brazil
| | | | - Helio Langoni
- Universidade Estadual Paulista, Departamento de Higiene Veterinária e Saúde Pública, Botucatu, São Paulo, Brazil
| | - Jane Megid
- Universidade Estadual Paulista, Departamento de Higiene Veterinária e Saúde Pública, Botucatu, São Paulo, Brazil
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Monteiro YF, Silva MVF, Bittencourt APSV, Bittencourt AS. Plastination with low viscosity silicone: strategy for less tissue shrinkage. Braz J Med Biol Res 2022; 55:e11962. [PMID: 35857995 PMCID: PMC9296127 DOI: 10.1590/1414-431x2022e11962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 05/09/2022] [Indexed: 01/16/2023] Open
Abstract
Plastination is an anatomical technique for preserving biological tissues based
on the principle of replacing body fluids with a curable polymer. An
inconvenient aspect of this technique is the tissue shrinkage it causes; several
studies seek ways to reduce or avoid this shrinkage. Additionally, there are no
studies in the literature that quantitatively evaluate the use of low viscosity
silicones in plastination having shrinkage of tissue as a parameter. Therefore,
this study aimed to evaluate the use of Silicones S10 (Biodur) and P1 (Polisil)
in the plastination of different types of biological tissues of a sliced human
body, having as a parameter the tissue shrinkage caused in the forced
impregnation stage. Human cardiac, pulmonary, splenic, renal, hepatic, muscular,
and bone tissues were analyzed. For such purpose, a male human body was used,
sliced in 13-15-mm-thick pieces, having as a parameter the before and the after
plastination with the different silicones. The standard protocol of the
plastination of the slices was followed: dehydration, forced impregnation, and
curation. Half of the pieces obtained were plastinated with silicone P1 (group
P1) and the other half with S10 (group S10). All tissues and anatomical segments
analyzed in this study showed less or equal shrinkage when plastination of the
control group (S10) was compared with that of the P1 group. Therefore, we
concluded that the lower viscosity silicone promoted less tissue shrinkage,
making it a viable alternative to the reference.
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Affiliation(s)
- Y F Monteiro
- Laboratório de Plastinação, Departamento de Morfologia, Centro de Ciências da Saúde, Universidade Federal do Espírito Santo, Vitória, ES, Brasil.,Programa de Pós-Graduação em Bioquímica, Universidade Federal do Espírito Santo, Vitória, ES, Brasil
| | - M V F Silva
- Laboratório de Plastinação, Departamento de Morfologia, Centro de Ciências da Saúde, Universidade Federal do Espírito Santo, Vitória, ES, Brasil
| | - A P S V Bittencourt
- Laboratório de Plastinação, Departamento de Morfologia, Centro de Ciências da Saúde, Universidade Federal do Espírito Santo, Vitória, ES, Brasil.,Departamento de Ciências Fisiológicas, Universidade Federal do Espírito Santo, Vitória, ES, Brasil
| | - A S Bittencourt
- Laboratório de Plastinação, Departamento de Morfologia, Centro de Ciências da Saúde, Universidade Federal do Espírito Santo, Vitória, ES, Brasil.,Programa de Pós-Graduação em Bioquímica, Universidade Federal do Espírito Santo, Vitória, ES, Brasil
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de França DA, Mioni MDSR, Fornazari F, Duré AÍDL, Silva MVF, Possebon FS, Richini-Pereira VB, Langoni H, Megid J. Seropositivity for Coxiella burnetii in suspected patients with dengue in São Paulo state, Brazil. PLoS Negl Trop Dis 2022; 16:e0010392. [PMID: 35536865 PMCID: PMC9122222 DOI: 10.1371/journal.pntd.0010392] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 05/20/2022] [Accepted: 04/04/2022] [Indexed: 11/25/2022] Open
Abstract
Q fever and brucellosis are zoonoses that cause fever and other systemic clinical signs in humans; their occurrences are neglected and the differential diagnosis for some diseases is disregarded. This study aimed to investigate the seropositivity for Coxiella burnetii and Brucella spp. antibodies in patients suspected of dengue from 38 municipalities in the state of São Paulo, Brazil. The samples (n = 604) were obtained by convenience from the Adolfo Lutz Institute serum bank. Sera were subjected to an indirect immunofluorescence assay (IFA) using in-house and commercial diagnostic protocols to evaluate C. burnetii positivity. For Brucella spp., sera were subjected to rapid plate serum agglutination with buffered acidified antigen (AAT), slow tube serum agglutination (SAL), and 2-mercaptoethanol (2-ME) techniques. Associations and statistical inferences of the results were performed by logistic regression according to the clinical and demographic variables collected from the patients. Statistical analyses were performed using Statistical Analysis Software (SAS) and associations were considered when p value was <0.05. In all, 129 patients showed positive results for Q fever, indicating a seropositivity of 21.4% (95% CI 18.15–24.85). Patients with 14–20 days of symptoms had 2.12 (95% CI 1.34–3.35) times more chances of being seropositive for Q fever than patients with 7–13 days, and patients with 21–27 days of fever had 2.62 (95% CI 1.27–5.41) times more chances of being seropositive for Q fever than patients with 7–13 days. For the other variables analyzed, there were no significant associations between the groups. No positivity for brucellosis was observed. This is the most comprehensive study of people seropositive for Q fever in São Paulo state and provides additional data for the medical community in Brazil. It is suggested that Q fever may be an important differential diagnosis of febrile illnesses in the region, demanding the government’s attention and investment in health. Brazil is a tropical country with a warm climate and large animal herds that favor many zoonotic agents that circulate in the territory. Due to the high prevalence of some tropical diseases, such as dengue, malaria, and chikungunya, important zoonoses have been neglected during the clinical evaluation of patients, resulting in misdiagnosis. Examples include Q fever and brucellosis, zoonoses that occur in animals in Brazil and are easily transmitted to humans through contaminated air and food products. There is not much data on these diseases in humans in the country representing their actual health situation. The current knowledge is supported by a few serological surveys developed by research groups and case reports. In this study, sera from patients with fever of unknown origin were positive for Q fever and brucellosis. The authors found that, contrary to brucellosis, Q fever has affected many people in São Paulo, the most populous state in the country. In addition, other findings regarding patient profile and disease behavior have been established. This research highlights the need for surveillance and control of Q fever in humans and animals to prevent acute cases and treat chronic patients.
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Affiliation(s)
- Danilo Alves de França
- Department of Veterinary Hygiene and Public Health, Paulista State University “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Mateus de Souza Ribeiro Mioni
- Department of Veterinary Hygiene and Public Health, Paulista State University “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
- * E-mail: (MM); (JM)
| | - Felipe Fornazari
- Department of Veterinary Hygiene and Public Health, Paulista State University “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Ana Íris de Lima Duré
- Octávio Magalhães Institute, Ezequiel Dias Foundation, Belo Horizonte, Minas Gerais, Brazil
| | | | - Fábio Sossai Possebon
- Department of Veterinary Hygiene and Public Health, Paulista State University “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | | | - Helio Langoni
- Department of Veterinary Hygiene and Public Health, Paulista State University “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
| | - Jane Megid
- Department of Veterinary Hygiene and Public Health, Paulista State University “Júlio de Mesquita Filho”, Botucatu, São Paulo, Brazil
- * E-mail: (MM); (JM)
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Xavier J, Giovanetti M, Adelino T, Fonseca V, Barbosa da Costa AV, Ribeiro AA, Felicio KN, Duarte CG, Ferreira Silva MV, Salgado Á, Lima MT, de Jesus R, Fabri A, Soares Zoboli CF, Souza Santos TG, Iani F, Ciccozzi M, Bispo de Filippis AM, Teixeira de Siqueira MAM, de Abreu AL, de Azevedo V, Ramalho DB, Campelo de Albuquerque CF, de Oliveira T, Holmes EC, Lourenço J, Junior Alcantara LC, Assunção Oliveira MA. The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing. Emerg Microbes Infect 2020; 9:1824-1834. [PMID: 32726185 PMCID: PMC7473129 DOI: 10.1080/22221751.2020.1803146] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 07/06/2020] [Accepted: 07/26/2020] [Indexed: 12/30/2022]
Abstract
The recent emergence of a coronavirus (SARS-CoV-2), first identified in the Chinese city of Wuhan in December 2019, has had major public health and economic consequences. Although 61,888 confirmed cases were reported in Brazil by 28 April 2020, little is known about the SARS-CoV-2 epidemic in this country. To better understand the recent epidemic in the second most populous state in southeast Brazil - Minas Gerais (MG) - we sequenced 40 complete SARS-CoV-2 genomes from MG cases and examined epidemiological data from three Brazilian states. Both the genome analyses and the geographical distribution of reported cases indicate for multiple independent introductions into MG. Epidemiological estimates of the reproductive number (R) using different data sources and theoretical assumptions suggest the potential for sustained virus transmission despite a reduction in R from the first reported case to the end of April 2020. The estimated date of SARS-CoV-2 introduction into Brazil was consistent with epidemiological data from the first case of a returned traveller from Lombardy, Italy. These findings highlight the nature of the COVID-19 epidemic in MG and reinforce the need for real-time and continued genomic surveillance strategies to better understand and prepare for the epidemic spread of emerging viral pathogens..
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Affiliation(s)
- Joilson Xavier
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Marta Giovanetti
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil
| | - Talita Adelino
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
- Laboratório Central de Saúde Pública, Fundação Ezequiel Dias, Belo Horizonte, Brazil
| | - Vagner Fonseca
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
- KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), College of Health Sciences, University of KwaZuluNatal, Durban4001, South Africa
| | | | | | | | - Clara Guerra Duarte
- Laboratório Central de Saúde Pública, Fundação Ezequiel Dias, Belo Horizonte, Brazil
| | | | - Álvaro Salgado
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Mauricio Teixeira Lima
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Ronaldo de Jesus
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Allison Fabri
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil
| | | | | | - Felipe Iani
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
- Laboratório Central de Saúde Pública, Fundação Ezequiel Dias, Belo Horizonte, Brazil
| | | | | | | | - André Luiz de Abreu
- Coordenação Geral dos Laboratórios de Saúde Pública/Secretaria de Vigilância em Saúde, Ministério da Saúde, Brasília, Distrito Federal, Brazil
| | - Vasco de Azevedo
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | | | | | - Tulio de Oliveira
- KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), College of Health Sciences, University of KwaZuluNatal, Durban4001, South Africa
| | - Edward C. Holmes
- Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, University of Sydney, Sydney, NSW, Australia
| | - José Lourenço
- Department of Zoology, University of Oxford, OxfordOX1 3PS, UK
| | - Luiz Carlos Junior Alcantara
- Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil
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Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG. Genomic and epidemiological monitoring of yellow fever virus transmission potential. Science 2018; 361:894-899. [PMID: 30139911 PMCID: PMC6874500 DOI: 10.1126/science.aat7115] [Citation(s) in RCA: 204] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Accepted: 07/20/2018] [Indexed: 12/21/2022]
Abstract
The yellow fever virus (YFV) epidemic in Brazil is the largest in decades. The recent discovery of YFV in Brazilian Aedes species mosquitos highlights a need to monitor the risk of reestablishment of urban YFV transmission in the Americas. We use a suite of epidemiological, spatial, and genomic approaches to characterize YFV transmission. We show that the age and sex distribution of human cases is characteristic of sylvatic transmission. Analysis of YFV cases combined with genomes generated locally reveals an early phase of sylvatic YFV transmission and spatial expansion toward previously YFV-free areas, followed by a rise in viral spillover to humans in late 2016. Our results establish a framework for monitoring YFV transmission in real time that will contribute to a global strategy to eliminate future YFV epidemics.
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Affiliation(s)
- N R Faria
- Department of Zoology, University of Oxford, Oxford, UK.
| | - M U G Kraemer
- Department of Zoology, University of Oxford, Oxford, UK
- Computational Epidemiology Lab, Boston Children's Hospital, Boston, MA, USA
- Department of Pediatrics, Harvard Medical School, Boston, MA, USA
| | - S C Hill
- Department of Zoology, University of Oxford, Oxford, UK
| | - J Goes de Jesus
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - R S Aguiar
- Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - F C M Iani
- Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte, Minas Gerais, Brazil
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - J Xavier
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - J Quick
- Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK
| | - L du Plessis
- Department of Zoology, University of Oxford, Oxford, UK
| | - S Dellicour
- Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium
| | - J Thézé
- Department of Zoology, University of Oxford, Oxford, UK
| | - R D O Carvalho
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - G Baele
- Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium
| | - C-H Wu
- Department of Statistics, University of Oxford, Oxford, UK
| | - P P Silveira
- Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - M B Arruda
- Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - M A Pereira
- Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte, Minas Gerais, Brazil
| | - G C Pereira
- Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte, Minas Gerais, Brazil
| | - J Lourenço
- Department of Zoology, University of Oxford, Oxford, UK
| | - U Obolski
- Department of Zoology, University of Oxford, Oxford, UK
| | - L Abade
- Department of Zoology, University of Oxford, Oxford, UK
- The Global Health Network, University of Oxford, Oxford, UK
| | - T I Vasylyeva
- Department of Zoology, University of Oxford, Oxford, UK
| | - M Giovanetti
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - D Yi
- Department of Statistics, Harvard University, Cambridge, MA, USA
| | - D J Weiss
- Malaria Atlas Project, Big Data Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK
| | - G R W Wint
- Department of Zoology, University of Oxford, Oxford, UK
| | - F M Shearer
- Malaria Atlas Project, Big Data Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK
| | - S Funk
- Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, UK
| | - B Nikolay
- Mathematical Modelling of Infectious Diseases and Center of Bioinformatics, Institut Pasteur, Paris, France
- CNRS UMR2000: Génomique Évolutive, Modélisation et Santé, Institut Pasteur, Paris, France
| | - V Fonseca
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
- KwaZulu-Natal Research, Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, South Africa
| | - T E R Adelino
- Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte, Minas Gerais, Brazil
| | - M A A Oliveira
- Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte, Minas Gerais, Brazil
| | - M V F Silva
- Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte, Minas Gerais, Brazil
| | - L Sacchetto
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - P O Figueiredo
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - I M Rezende
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - E M Mello
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - R F C Said
- Secretaria de Estado de Saúde de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - D A Santos
- Secretaria de Estado de Saúde de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - M L Ferraz
- Secretaria de Estado de Saúde de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - M G Brito
- Secretaria de Estado de Saúde de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - L F Santana
- Secretaria de Estado de Saúde de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - M T Menezes
- Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - R M Brindeiro
- Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - A Tanuri
- Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - F C P Dos Santos
- Núcleo de Doenças de Transmissão Vetorial, Instituto Adolfo Lutz, São Paulo, Brazil
| | - M S Cunha
- Núcleo de Doenças de Transmissão Vetorial, Instituto Adolfo Lutz, São Paulo, Brazil
| | - J S Nogueira
- Núcleo de Doenças de Transmissão Vetorial, Instituto Adolfo Lutz, São Paulo, Brazil
| | - I M Rocco
- Núcleo de Doenças de Transmissão Vetorial, Instituto Adolfo Lutz, São Paulo, Brazil
| | - A C da Costa
- Instituto de Medicina Tropical e Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil
| | - S C V Komninakis
- Retrovirology Laboratory, Federal University of São Paulo, São Paulo, Brazil
- School of Medicine of ABC (FMABC), Clinical Immunology Laboratory, Santo André, São Paulo, Brazil
| | - V Azevedo
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - A O Chieppe
- Coordenação de Vigilância Epidemiológica do Estado do Rio de Janeiro, Rio de Janeiro, Brazil
| | - E S M Araujo
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - M C L Mendonça
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - C C Dos Santos
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - C D Dos Santos
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - A M Mares-Guia
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - R M R Nogueira
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - P C Sequeira
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - R G Abreu
- Departamento de Vigilância das Doenças Transmissíveis da Secretaria de Vigilância em Saúde, Ministério da Saúde, Brasília-DF, Brazil
| | - M H O Garcia
- Departamento de Vigilância das Doenças Transmissíveis da Secretaria de Vigilância em Saúde, Ministério da Saúde, Brasília-DF, Brazil
| | - A L Abreu
- Secretaria de Vigilância em Saúde, Coordenação Geral de Laboratórios de Saúde Pública, Ministério da Saúde, Brasília-DF, Brazil
| | - O Okumoto
- Secretaria de Vigilância em Saúde, Coordenação Geral de Laboratórios de Saúde Pública, Ministério da Saúde, Brasília-DF, Brazil
| | - E G Kroon
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - C F C de Albuquerque
- Organização Pan - Americana da Saúde/Organização Mundial da Saúde - (OPAS/OMS), Brasília-DF, Brazil
| | - K Lewandowski
- Public Health England, National Infections Service, Porton Down, Salisbury, UK
| | - S T Pullan
- Public Health England, National Infections Service, Porton Down, Salisbury, UK
| | - M Carroll
- NIHR HPRU in Emerging and Zoonotic Infections, Public Health England, London, UK
| | - T de Oliveira
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
- KwaZulu-Natal Research, Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, South Africa
- Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa
| | - E C Sabino
- Instituto de Medicina Tropical e Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil
| | - R P Souza
- Núcleo de Doenças de Transmissão Vetorial, Instituto Adolfo Lutz, São Paulo, Brazil
| | - M A Suchard
- Department of Biostatistics, UCLA Fielding School of Public Health, University of California, Los Angeles, CA, USA
- Department of Biomathematics and Human Genetics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, CA, USA
| | - P Lemey
- Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium
| | - G S Trindade
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - B P Drumond
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - A M B Filippis
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
| | - N J Loman
- Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK
| | - S Cauchemez
- Mathematical Modelling of Infectious Diseases and Center of Bioinformatics, Institut Pasteur, Paris, France
- CNRS UMR2000: Génomique Évolutive, Modélisation et Santé, Institut Pasteur, Paris, France
| | - L C J Alcantara
- Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil.
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - O G Pybus
- Department of Zoology, University of Oxford, Oxford, UK.
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