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Varughese B, Manna S, Loeffler TD, Batra R, Cherukara MJ, Sankaranarayanan SKRS. Active and Transfer Learning of High-Dimensional Neural Network Potentials for Transition Metals. ACS Appl Mater Interfaces 2024. [PMID: 38593033 DOI: 10.1021/acsami.3c15399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
2
Rebuffi L, Kandel S, Shi X, Zhang R, Harder RJ, Cha W, Highland MJ, Frith MG, Assoufid L, Cherukara MJ. AutoFocus: AI-driven alignment of nanofocusing X-ray mirror systems. Opt Express 2023;31:39514-39527. [PMID: 38041271 DOI: 10.1364/oe.505289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 10/08/2023] [Indexed: 12/03/2023]
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Babu AV, Zhou T, Kandel S, Bicer T, Liu Z, Judge W, Ching DJ, Jiang Y, Veseli S, Henke S, Chard R, Yao Y, Sirazitdinova E, Gupta G, Holt MV, Foster IT, Miceli A, Cherukara MJ. Deep learning at the edge enables real-time streaming ptychographic imaging. Nat Commun 2023;14:7059. [PMID: 37923741 PMCID: PMC10624836 DOI: 10.1038/s41467-023-41496-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 09/06/2023] [Indexed: 11/06/2023]  Open
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Kandel S, Zhou T, Babu AV, Di Z, Li X, Ma X, Holt M, Miceli A, Phatak C, Cherukara MJ. Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy. Nat Commun 2023;14:5501. [PMID: 37679317 PMCID: PMC10485018 DOI: 10.1038/s41467-023-40339-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 07/19/2023] [Indexed: 09/09/2023]  Open
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Myint P, Chu M, Tripathi A, Wojcik MJ, Zhou J, Cherukara MJ, Narayanan S, Wang J, Jiang Z. Multislice forward modeling of coherent surface scattering imaging on surface and interfacial structures. Opt Express 2023;31:11261-11273. [PMID: 37155766 DOI: 10.1364/oe.481401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
6
Ahn Y, Cherukara MJ, Cai Z, Bartlein M, Zhou T, DiChiara A, Walko DA, Holt M, Fullerton EE, Evans PG, Wen H. X-ray nanodiffraction imaging reveals distinct nanoscopic dynamics of an ultrafast phase transition. Proc Natl Acad Sci U S A 2022;119:e2118597119. [PMID: 35522708 PMCID: PMC9171639 DOI: 10.1073/pnas.2118597119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Accepted: 04/11/2022] [Indexed: 12/04/2022]  Open
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Koneru A, Batra R, Manna S, Loeffler TD, Chan H, Sternberg M, Avarca A, Singh H, Cherukara MJ, Sankaranarayanan SKRS. Multi-reward Reinforcement Learning Based Bond-Order Potential to Study Strain-Assisted Phase Transitions in Phosphorene. J Phys Chem Lett 2022;13:1886-1893. [PMID: 35175062 DOI: 10.1021/acs.jpclett.1c03551] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
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Manna S, Loeffler TD, Batra R, Banik S, Chan H, Varughese B, Sasikumar K, Sternberg M, Peterka T, Cherukara MJ, Gray SK, Sumpter BG, Sankaranarayanan SKRS. Learning in continuous action space for developing high dimensional potential energy models. Nat Commun 2022;13:368. [PMID: 35042872 PMCID: PMC8766468 DOI: 10.1038/s41467-021-27849-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Accepted: 12/13/2021] [Indexed: 12/17/2022]  Open
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Banik S, Loeffler TD, Batra R, Singh H, Cherukara MJ, Sankaranarayanan SKRS. Learning with Delayed Rewards-A Case Study on Inverse Defect Design in 2D Materials. ACS Appl Mater Interfaces 2021;13:36455-36464. [PMID: 34288661 DOI: 10.1021/acsami.1c07545] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
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Srinivasan S, Batra R, Chan H, Kamath G, Cherukara MJ, Sankaranarayanan SKRS. Artificial Intelligence-Guided De Novo Molecular Design Targeting COVID-19. ACS Omega 2021;6:12557-12566. [PMID: 34056406 PMCID: PMC8154149 DOI: 10.1021/acsomega.1c00477] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 02/18/2021] [Indexed: 05/14/2023]
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Shabalin AG, Del Valle J, Hua N, Cherukara MJ, Holt MV, Schuller IK, Shpyrko OG. Nanoscale Imaging and Control of Volatile and Non-Volatile Resistive Switching in VO2. Small 2020;16:e2005439. [PMID: 33230936 DOI: 10.1002/smll.202005439] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 10/26/2020] [Indexed: 06/11/2023]
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Batra R, Chan H, Kamath G, Ramprasad R, Cherukara MJ, Sankaranarayanan SK. Screening of Therapeutic Agents for COVID-19 Using Machine Learning and Ensemble Docking Studies. J Phys Chem Lett 2020;11:7058-7065. [PMID: 32787328 PMCID: PMC7430156 DOI: 10.1021/acs.jpclett.0c02278] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Accepted: 08/05/2020] [Indexed: 05/03/2023]
13
Bakaul SR, Kim J, Hong S, Cherukara MJ, Zhou T, Stan L, Serrao CR, Salahuddin S, Petford-Long AK, Fong DD, Holt MV. Ferroelectric Domain Wall Motion in Freestanding Single-Crystal Complex Oxide Thin Film. Adv Mater 2020;32:e1907036. [PMID: 31814190 DOI: 10.1002/adma.201907036] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2019] [Revised: 11/21/2019] [Indexed: 05/28/2023]
14
Chan H, Cherukara MJ, Narayanan B, Loeffler TD, Benmore C, Gray SK, Sankaranarayanan SKRS. Machine learning coarse grained models for water. Nat Commun 2019;10:379. [PMID: 30670699 PMCID: PMC6342926 DOI: 10.1038/s41467-018-08222-6] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Accepted: 12/19/2018] [Indexed: 11/09/2022]  Open
15
Cherukara MJ, Nashed YSG, Harder RJ. Real-time coherent diffraction inversion using deep generative networks. Sci Rep 2018;8:16520. [PMID: 30410034 PMCID: PMC6224523 DOI: 10.1038/s41598-018-34525-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 10/19/2018] [Indexed: 11/11/2022]  Open
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Patra TK, Zhang F, Schulman DS, Chan H, Cherukara MJ, Terrones M, Das S, Narayanan B, Sankaranarayanan SKRS. Defect Dynamics in 2-D MoS2 Probed by Using Machine Learning, Atomistic Simulations, and High-Resolution Microscopy. ACS Nano 2018;12:8006-8016. [PMID: 30074765 DOI: 10.1021/acsnano.8b02844] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
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Kim D, Chung M, Carnis J, Kim S, Yun K, Kang J, Cha W, Cherukara MJ, Maxey E, Harder R, Sasikumar K, K R S Sankaranarayanan S, Zozulya A, Sprung M, Riu D, Kim H. Active site localization of methane oxidation on Pt nanocrystals. Nat Commun 2018;9:3422. [PMID: 30143615 PMCID: PMC6109038 DOI: 10.1038/s41467-018-05464-2] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Accepted: 07/05/2018] [Indexed: 11/24/2022]  Open
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Loeffler TD, Chan H, Narayanan B, Cherukara MJ, Gray S, Sankaranarayanan SKRS. Configurational-Bias Monte Carlo Back-Mapping Algorithm for Efficient and Rapid Conversion of Coarse-Grained Water Structures into Atomistic Models. J Phys Chem B 2018;122:7102-7110. [DOI: 10.1021/acs.jpcb.8b01791] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
19
Liu H, Dong Y, Cherukara MJ, Sasikumar K, Narayanan B, Cai Z, Lai B, Stan L, Hong S, Chan MKY, Sankaranarayanan SKRS, Zhou H, Fong DD. Quantitative Observation of Threshold Defect Behavior in Memristive Devices with Operando X-ray Microscopy. ACS Nano 2018;12:4938-4945. [PMID: 29715007 DOI: 10.1021/acsnano.8b02028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
20
Berman D, Narayanan B, Cherukara MJ, Sankaranarayanan SKRS, Erdemir A, Zinovev A, Sumant AV. Operando tribochemical formation of onion-like-carbon leads to macroscale superlubricity. Nat Commun 2018;9:1164. [PMID: 29563513 PMCID: PMC5862981 DOI: 10.1038/s41467-018-03549-6] [Citation(s) in RCA: 134] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 02/22/2018] [Indexed: 12/02/2022]  Open
21
Cherukara MJ, Schulmann DS, Sasikumar K, Arnold AJ, Chan H, Sadasivam S, Cha W, Maser J, Das S, Sankaranarayanan SKRS, Harder RJ. Three-Dimensional Integrated X-ray Diffraction Imaging of a Native Strain in Multi-Layered WSe2. Nano Lett 2018;18:1993-2000. [PMID: 29451799 DOI: 10.1021/acs.nanolett.7b05441] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
22
Cherukara MJ, Sasikumar K, DiChiara A, Leake SJ, Cha W, Dufresne EM, Peterka T, McNulty I, Walko DA, Wen H, Sankaranarayanan SKRS, Harder RJ. Ultrafast Three-Dimensional Integrated Imaging of Strain in Core/Shell Semiconductor/Metal Nanostructures. Nano Lett 2017;17:7696-7701. [PMID: 29086574 DOI: 10.1021/acs.nanolett.7b03823] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Fang Y, Jiang Y, Cherukara MJ, Shi F, Koehler K, Freyermuth G, Isheim D, Narayanan B, Nicholls AW, Seidman DN, Sankaranarayanan SKRS, Tian B. Alloy-assisted deposition of three-dimensional arrays of atomic gold catalyst for crystal growth studies. Nat Commun 2017;8:2014. [PMID: 29222439 PMCID: PMC5722855 DOI: 10.1038/s41467-017-02025-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2017] [Accepted: 11/01/2017] [Indexed: 11/10/2022]  Open
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Cherukara MJ, Narayanan B, Chan H, Sankaranarayanan SKRS. Silicene growth through island migration and coalescence. Nanoscale 2017;9:10186-10192. [PMID: 28617507 DOI: 10.1039/c7nr03153j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
25
Cherukara MJ, Sasikumar K, Cha W, Narayanan B, Leake SJ, Dufresne EM, Peterka T, McNulty I, Wen H, Sankaranarayanan SKRS, Harder RJ. Ultrafast Three-Dimensional X-ray Imaging of Deformation Modes in ZnO Nanocrystals. Nano Lett 2017;17:1102-1108. [PMID: 28026962 DOI: 10.1021/acs.nanolett.6b04652] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
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Cherukara MJ, Narayanan B, Kinaci A, Sasikumar K, Gray SK, Chan MKY, Sankaranarayanan SKRS. Ab Initio-Based Bond Order Potential to Investigate Low Thermal Conductivity of Stanene Nanostructures. J Phys Chem Lett 2016;7:3752-3759. [PMID: 27569053 DOI: 10.1021/acs.jpclett.6b01562] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
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