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Petrou EL, Fuentes-Pardo AP, Rogers LA, Orobko M, Tarpey C, Jiménez-Hidalgo I, Moss ML, Yang D, Pitcher TJ, Sandell T, Lowry D, Ruzzante DE, Hauser L. Functional genetic diversity in an exploited marine species and its relevance to fisheries management. Proc Biol Sci 2021; 288:20202398. [PMID: 33622133 PMCID: PMC7934995 DOI: 10.1098/rspb.2020.2398] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Accepted: 01/28/2021] [Indexed: 01/02/2023] Open
Abstract
The timing of reproduction influences key evolutionary and ecological processes in wild populations. Variation in reproductive timing may be an especially important evolutionary driver in the marine environment, where the high mobility of many species and few physical barriers to migration provide limited opportunities for spatial divergence to arise. Using genomic data collected from spawning aggregations of Pacific herring (Clupea pallasii) across 1600 km of coastline, we show that reproductive timing drives population structure in these pelagic fish. Within a specific spawning season, we observed isolation by distance, indicating that gene flow is also geographically limited over our study area. These results emphasize the importance of considering both seasonal and spatial variation in spawning when delineating management units for herring. On several chromosomes, we detected linkage disequilibrium extending over multiple Mb, suggesting the presence of chromosomal rearrangements. Spawning phenology was highly correlated with polymorphisms in several genes, in particular SYNE2, which influences the development of retinal photoreceptors in vertebrates. SYNE2 is probably within a chromosomal rearrangement in Pacific herring and is also associated with spawn timing in Atlantic herring (Clupea harengus). The observed genetic diversity probably underlies resource waves provided by spawning herring. Given the ecological, economic and cultural significance of herring, our results support that conserving intraspecific genetic diversity is important for maintaining current and future ecosystem processes.
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Affiliation(s)
- Eleni L. Petrou
- School of Aquatic and Fishery Sciences, University of Washington, 1122 NE Boat Street, Seattle WA 98105, USA
| | | | - Luke A. Rogers
- Fisheries and Oceans Canada, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6
| | - Melissa Orobko
- Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6
| | - Carolyn Tarpey
- School of Aquatic and Fishery Sciences, University of Washington, 1122 NE Boat Street, Seattle WA 98105, USA
| | - Isadora Jiménez-Hidalgo
- School of Aquatic and Fishery Sciences, University of Washington, 1122 NE Boat Street, Seattle WA 98105, USA
| | - Madonna L. Moss
- Department of Anthropology, University of Oregon, Eugene, OR 97403, USA
| | - Dongya Yang
- Department of Archaeology, Simon Fraser University, Education Building 9635, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6
| | - Tony J. Pitcher
- University of British Columbia, Institute for the Oceans and Fisheries, Vancouver, British Columbia, Canada
| | - Todd Sandell
- Washington Department of Fish and Wildlife, 16018 Mill Creek Boulevard, Mill Creek, WA 98012-1541, USA
| | - Dayv Lowry
- Washington Department of Fish and Wildlife, 1111 Washington Street SE, 6th Floor, Olympia, WA 98504-3150, USA
| | - Daniel E. Ruzzante
- Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4R2
| | - Lorenz Hauser
- School of Aquatic and Fishery Sciences, University of Washington, 1122 NE Boat Street, Seattle WA 98105, USA
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