Microbiomes of an oyster are shaped by metabolism and environment

Microbiomes can both influence and be influenced by metabolism, but this relationship remains unexplored for invertebrates. We examined the relationship between microbiome and metabolism in response to climate change using oysters as a model marine invertebrate. Oysters form economies and ecosystems across the globe, yet are vulnerable to climate change. Nine genetic lineages of the oyster Saccostrea glomerata were exposed to ambient and elevated temperature and PCO2 treatments. The metabolic rate (MR) and metabolic by-products of extracellular pH and CO2 were measured. The oyster-associated bacterial community in haemolymph was characterised using 16 s rRNA gene sequencing. We found a significant negative relationship between MR and bacterial richness. Bacterial community composition was also significantly influenced by MR, extracellular CO2 and extracellular pH. The effects of extracellular CO2 depended on genotype, and the effects of extracellular pH depended on CO2 and temperature treatments. Changes in MR aligned with a shift in the relative abundance of 152 Amplicon Sequencing Variants (ASVs), with 113 negatively correlated with MR. Some spirochaete ASVs showed positive relationships with MR. We have identified a clear relationship between host metabolism and the microbiome in oysters. Altering this relationship will likely have consequences for the 12 billion USD oyster economy.

Microbiome response differs among selected lines of Sydney rock oysters to ocean warming and acidification

Oyster microbiomes are integral to healthy function and can be altered by climate change conditions. Genetic variation among oysters is known to influence the response of oysters to climate change and may ameliorate any adverse effects on oyster microbiome; however, this remains unstudied. Nine full-sibling selected breeding lines of the Sydney rock oyster (Saccostrea glomerata) were exposed to predicted warming (ambient = 24°C, elevated = 28°C) and ocean acidification (ambient pCO2 = 400, elevated pCO2 = 1000 µatm) for 4 weeks. The haemolymph bacterial microbiome was characterized using 16S rRNA (V3-V4) gene sequencing and varied among oyster lines in the control (ambient pCO2, 24°C) treatment. Microbiomes were also altered by climate change dependent on oyster lines. Bacterial α-diversity increased in response to elevated pCO2 in two selected lines, while bacterial β-diversity was significantly altered by combinations of elevated pCO2 and temperature in four selected lines. Climate change treatments caused shifts in the abundance of multiple amplicon sequence variants driving change in the microbiome of some selected lines. We show that oyster genetic background may influence the Sydney rock oyster haemolymph microbiome under climate change and that future assisted evolution breeding programs to enhance resilience should consider the oyster microbiome.

Climate change alters the haemolymph microbiome of oysters

The wellbeing of marine organisms is connected to their microbiome. Oysters are a vital food source and provide ecological services, yet little is known about how climate change such as ocean acidification and warming will affect their microbiome. We exposed the Sydney rock oyster, Saccostrea glomerata, to orthogonal combinations of temperature (24, 28 °C) and pCO₂ (400 and 1000 μatm) for eight weeks and used amplicon sequencing of the 16S rRNA (V3-V4) gene to characterise the bacterial community in haemolymph. Overall, elevated pCO₂ and temperature interacted to alter the microbiome of oysters, with a clear partitioning of treatments in CAP ordinations. Elevated pCO₂ was the strongest driver of species diversity and richness and elevated temperature also increased species richness. Climate change, both ocean acidification and warming, will alter the microbiome of S. glomerata which may increase the susceptibility of oysters to disease.

Heatwaves alter survival of the Sydney rock oyster, Saccostrea glomerata

Heatwaves are an increasing threat to organisms across the globe. Marine and atmospheric heatwaves are predicted to impact sessile intertidal marine organisms, especially when exposed at low tide and unable to seek refuge. The study aimed to determine whether a simulated atmospheric heatwave will alter the survival of selectively bred families of Sydney rock oysters (Saccostrea glomerata), and whether survival is dependent on morphological and physiological traits. The survival of S. glomerata families to a simulated atmospheric heatwave varied from 25 to 60% and was not correlated with morphology or physiology. Survival may depend on the presence of genotypes that translate into molecular defenses such as heat-shock proteins and inhibitor of apoptosis proteins that provide oysters with resilience. Understanding the responses among families of oysters to heatwaves is critical if we are to restore the ecological services of oyster reefs and sustain oyster aquaculture.

First observations of perfluorooctane sulfonate occurrence and depuration from Sydney Rock Oysters, Saccostrea glomerata, in Port Stephens NSW Australia

Following the discovery of potential chronic perfluoroalkyl substances (PFAS) contamination of Tilligerry Creek, Port Stephens (New South Wales Australia), sampling was undertaken to confirm the presence, extent and levels of contamination in commercial oyster crops of Sydney Rock Oyster (Saccostrea glomerata) and Pacific Oyster (Crassostrea gigas) grown within the estuary. Among a range of PFAS tested, only perfluorooctane sulfonate (PFOS) was detected. Concentrations of PFOS in oyster tissues for S. glomerata ranged from 1.6μgkg^-1 ww (wet weight) to below the limit of reporting of 0.3μgkg^-1 ww, with concentrations generally decreasing toward the lower reaches of the estuary. The sample of C. gigas tested had a PFOS concentration of 0.71μgkg^-1 ww that was consistent with concentrations observed in nearby S. glomerata. For harvest size (50-60g) S. glomerata, both holding contaminated oysters in a depuration system, and relocation to a non-contaminated area, saw significant reductions in the tissue PFOS concentrations. For oysters held in a depuration system, PFOS depurated at a rate of 0.008h^-1 (0.004-0.019h^-1; 90% CI), which corresponded with a depuration half-life of 87h (35-155h; 90%). A more conservative model (fitted to data that assumed concentrations<LOR were equal 0.5·LOR) predicted a depuration half-life of 131h. PFOS concentrations had fallen to below detectable limits within 162h. Similar decreases were observed in relocated oysters.