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Xu F, Bian N, Li X. SNHG14 Elevates NFAT5 Expression Through Sequestering miR-375-3p to Promote MPP + -Induced Neuronal Apoptosis, Inflammation, and Oxidative Stress in Parkinson's Disease. Neurochem Res 2024; 49:1212-1225. [PMID: 38381247 DOI: 10.1007/s11064-024-04106-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 01/09/2024] [Accepted: 01/11/2024] [Indexed: 02/22/2024]
Abstract
Parkinson's disease (PD) is a neurodegenerative disorder characterized by the loss of dopaminergic neurons. LncRNA small nucleolar RNA host gene 14 (SNHG14) was found to promote neuron injury in PD. Here, we investigated the mechanisms of SNHG14 in PD process. In vivo or in vitro PD model was established by using 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP)-induced mice or 1-methyl-4-phenylpyridinium (MPP +)-stimulated SK-N-SH cells. The expression of genes and proteins was measured by qRT-PCR and Western blot. In vitro assays were conducted using ELISA, CCK-8, colony formation, EdU, flow cytometry, and Western blot assays, respectively. The oxidative stress was evaluated by determining the production of superoxide dismutase (SOD) and malondialdehyde (MDA). The direct interactions between miR-375-3p and NFAT5 (Nuclear factor of activated T-cells 5) or SNHG14 was verified using dual-luciferase reporter and RNA immunoprecipitation (RIP) assays. SNHG14 and NFAT5 were elevated, while miR-375-3p was decreased in MPTP-mediated PD mouse model and MPP + -induced SK-N-SH cells. Knockdown of SNHG14 or NFAT5, or overexpression of miR-375-3p reversed MPP + -induced neuronal apoptosis, inflammation, and oxidative stress. Mechanistically, SNHG14 directly bound to miR-375, which targeted NFAT5. Inhibition of miR-375-3p abolished the inhibitory activity of SNHG14 knockdown on MPP + -evoked neuronal damage. Besides that, NFAT5 up-regulation counteracted the effects of miR-375-3p on MPP + -mediated neuronal damage. SNHG14 contributed to MPP + -induced neuronal injury by miR-375/NFAT5 axis, suggesting a new insight into the pathogenesis of PD.
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Affiliation(s)
- Furong Xu
- Department of Neurology, Chengdu Seventh People's Hospital, Chengdu, 610000, Sichuan, China
| | - Na Bian
- Department of Neurology, Baoji City People's Hospital, Baoji, 721000, Shaanxi, China
| | - Xuewen Li
- Department of Neurosurgery, People's Hospital of Dingxi City, 22 Anding Road, Anding District, Dingxi, 743000, Gansu, China.
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Bian N, Chen Y. Testing for stationary of housing prices in China: An examination using efficient unit root tests. Heliyon 2024; 10:e23891. [PMID: 38226240 PMCID: PMC10788525 DOI: 10.1016/j.heliyon.2023.e23891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 12/14/2023] [Accepted: 12/14/2023] [Indexed: 01/17/2024] Open
Abstract
Changes in housing prices affect all aspects of production and life, and have always been a hot spot of social concern. This paper uses the sequence panel selection method (SPSM) to study the time series properties of housing prices in 100 cities in China from June 2010 to December 2022. It is found that there are large differences in the stationary of housing prices in first/second/third-tier cities. Using the SPSM test method, it is found that housing prices in first-tier cities are all non-stationary series, the samples of second- and third-tier cities can be significantly divided into stable housing prices and non-stable housing prices. After further using the Fourier function to approximate the structural mutation of the data, more second-tier cities show stable housing prices, while less third-tier cities show stable housing prices. These findings provide an important decision-making basis for the government to implement regulatory policies according to local conditions based on the differential characteristics of changes in housing prices.
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Affiliation(s)
- Na Bian
- Dong Fureng Institute of Economic and School, Wuhan University, Wuhan, 430072, China
| | - Yiguo Chen
- Research Institute for Dual Circulation Development of the Greater Bay Area, Guangdong University of Finance and Economics, Guangzhou, 510320, China
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3
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Shi X, Zhao F, Xu L, Bian N, Wang F. Does the board's on-site decision inhibit over-investment. PLoS One 2021; 16:e0255453. [PMID: 34351945 PMCID: PMC8341494 DOI: 10.1371/journal.pone.0255453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 07/16/2021] [Indexed: 11/28/2022] Open
Abstract
It is an effective expansion of the research on the Board of Directors to do the research based on different board meeting forms and their effects sampling A-share companies listed in 2007–2017, the article empirically tests the impact of the times of board meetings, the proportion of on-site board meetings on listed companies’ over-investment. Consequently and significantly, the times of board meetings is positively correlated with over-investment, while the proportion of on-site board meetings is negatively correlated with over-investment. That is, the on-site meeting for the Board decision-making will better inhibit the enterprises’ over-investment behaviors. Further research shows that when there is a controlling shareholder in the company or in a dual position, the on-site board meeting no longer has a significant inhibitory effect on over-investment. By research on the independence of the Board of Directors, it is found that when selecting on-site board decision-making, the existence of independent directors has an over-investment suppression effect, and the higher the proportion of independent directors, the more obvious the inhibitory effect is. The samples are divided into state-owned enterprises and private enterprises, the study found that when choosing on-site board meetings, state-owned enterprises have a greater inhibitory effect on over-investment than private enterprises. The findings of this study will enrich the research of the board meeting and provide a new testing method for the relevant research of the Board of Directors.
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Affiliation(s)
- Xiaofei Shi
- School of Business Administration, Hebei University of Economics and Business, Shijiazhuang, Hebei, China
| | - Fei Zhao
- School of Business Administration, Hebei University of Economics and Business, Shijiazhuang, Hebei, China
| | - Long Xu
- School of Business Administration, Hebei University of Economics and Business, Shijiazhuang, Hebei, China
- * E-mail:
| | - Na Bian
- School of Management, Hebei University of Geosciences, Shijiazhuang, Hebei, China
| | - Fengfei Wang
- School of Business Administration, Hebei University of Economics and Business, Shijiazhuang, Hebei, China
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Wang LX, Wang DF, Jiang L, Bian N, Li Q, Shen CY. Influence of Process Parameters on the Morphologies of Micro-Injection Molded Polyformaldehyde Parts. INT POLYM PROC 2019. [DOI: 10.3139/217.3776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Abstract
The morphologies of micro-injection molded parts are influenced by the process parameters. In this paper, the influence of injection speed, mold temperature and melt temperature on the morphologies of micro-injection molded polyformaldehyde (POM) parts with different thicknesses were investigated by a single factor experimental method; the morphological structure of the parts was characterized by polarized light microscopy. The scale effect on the crystallization behavior and internal morphology of micro-injection POM parts was analyzed. The results indicated that the scale effect had a great influence on the hierarchical morphology in the thickness direction of the parts. The micro-parts with a thickness of 1.0 mm showed a skin-core structure including the skin layer, fine grain layer, oblate spherulite, and spherulite core layer, and the micro-parts with a thickness of 0.2 mm showed a skin-core structure with the skin layer, fine grain layer, and the spherulite core layer, and a larger thickness ratio of the spherulite core layer. As injection speed, mold temperature and melt temperature increase, the fine grain layer gradually disappears and the size of core spherulite tends to become larger, the thicknesses of the skin layer of all the micro-parts decrease and that of the 0.2 mm micro-parts decreases significantly.
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Affiliation(s)
- L.-X. Wang
- School of Mechanics and Engineering Science , Zhengzhou University, Zhengzhou , PRC
- National Center for International Research of Micro-Nano Molding Technology , Zhengzhou University, Zhengzhou , PRC
| | - D.-F. Wang
- School of Mechanics and Engineering Science , Zhengzhou University, Zhengzhou , PRC
- National Center for International Research of Micro-Nano Molding Technology , Zhengzhou University, Zhengzhou , PRC
| | - L. Jiang
- National Center for International Research of Micro-Nano Molding Technology , Zhengzhou University, Zhengzhou , PRC
| | - N. Bian
- National Center for International Research of Micro-Nano Molding Technology , Zhengzhou University, Zhengzhou , PRC
| | - Q. Li
- School of Mechanics and Engineering Science , Zhengzhou University, Zhengzhou , PRC
- National Center for International Research of Micro-Nano Molding Technology , Zhengzhou University, Zhengzhou , PRC
| | - C.-Y. Shen
- National Center for International Research of Micro-Nano Molding Technology , Zhengzhou University, Zhengzhou , PRC
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Yang W, Bian N, Zhu H, Hou Y, Shen C. Botulinum toxin a external urethral sphincter quadrant injection guided by transrectal ultrasound for treatment of detrusor sphincter dyssynergia. Ann Phys Rehabil Med 2018. [DOI: 10.1016/j.rehab.2018.05.549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Luo K, Qi T, Hou Z, Bian N, Zhao Y. [Clinical research for rehabilitation training combined with modified shu-acupuncture for joint dysfunction after meniscal suture surgery]. Zhongguo Zhen Jiu 2017; 37:957-60. [PMID: 29354917 DOI: 10.13703/j.0255-2930.2017.09.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
OBJECTIVE To compare the effects on joint dysfunction after meniscal suture surgery between rehabilitation training combined with modified shu-acupuncture and simple rehabilitation training. METHODS Seventy-one patients with meniscal suture surgery were randomized into an observation group (n=36) and a control group (n=35). Patients in the observation group received modified shu-acupuncture combined with rehabilitation training. Acupuncture for 8 weeks were at Zutonggu (BL 65), Shugu (BL 66), Neiting (ST 44), Xiangu (ST 43), Xiaxi (GB 43), Zulinqi (GB 41), Dadu (SP 2), Taibai (SP 3), Xingjian (LR 2), and Taichong (LR 3), once a day for continuous 6 days with 1 day for rest. Patients in the control group received simple rehabilitation training for continuous 8 weeks. The training included quadriceps femoris, range of knee joint motion and motion and limb walking on the affected side. The effect score for meniscus injury after treatment from Japanese Orthopaedics Association (JOA) and visual analogue scale (VAS) score were recorded before and after treatment. The effects were compared in the two groups. RESULTS After treatment, the VAS and JOA scores were improved in the two groups (all P<0.05), with better results in the observation group (both P<0.05). The effective rate was 91.7% (33/36) in the observation group, which was better than 80.0% (28/35) in the control group (P<0.05). CONCLUSION Rehabilitation training combined with shu-acupuncture achieve better effect than simple rehabilitation training for joint dysfunction after meniscal suture surgery.
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Affiliation(s)
- Kaimin Luo
- Department of Rehabilitation, the Second Hospital of Tangshan, Tangshan 063000, Hebei Province, China
| | - Tianchen Qi
- Department of Rehabilitation, the Second Hospital of Tangshan, Tangshan 063000, Hebei Province, China
| | - Zhi Hou
- Department of Rehabilitation, the Second Hospital of Tangshan, Tangshan 063000, Hebei Province, China
| | - Na Bian
- Department of Rehabilitation, the Second Hospital of Tangshan, Tangshan 063000, Hebei Province, China
| | - Yuejun Zhao
- Department of Rehabilitation, the Second Hospital of Tangshan, Tangshan 063000, Hebei Province, China
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Han K, Chen X, Bian N, Ma B, Yang T, Cai C, Fan Q, Zhou Y, Zhao TB. MicroRNA profiling identifies MiR-195 suppresses osteosarcoma cell metastasis by targeting CCND1. Oncotarget 2016; 6:8875-89. [PMID: 25823925 PMCID: PMC4496189 DOI: 10.18632/oncotarget.3560] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2015] [Accepted: 02/12/2015] [Indexed: 11/25/2022] Open
Abstract
Metastasis is a leading cause of mortality for osteosarcoma patients. The molecular pathological mechanism remains to be elucidated. In the previously study, we established two osteosarcoma cell lines with different metastatic potentials. Differential expressed genes and proteins regarding metastatic ability have been identified. MicroRNAs are important regulators in tumorigenesis and tumor progression. In this study, microRNA microarray was used to assess the differential expressed miRNAs level between these two cell lines. One of the top ranked miRNAs-miR-195 was identified highly expressing in lowly metastatic cells. It was showed that over-expression of miR-195 substantially inhibits migration and invasion of osteosarcoma cells in vitro and pulmonary metastasis formation in vivo. Meanwhile, CCND1 was identified as the target gene of miR-195 and further studied. More importantly, Using real-time PCR, we evaluated the expression of miR-195 and CCND1 in osteosarcoma samples from 107 frozen biopsy tissues and 99 formalin- or paraformalin-fixed, paraffin-embedded (FFPE) tissues. Results indicated lowly expressed miR-195 or highly CCND1 correlated with positive overall survival and their expression inverse relate to each other. In summary, our study suggests miR-195 function as a tumor metastasis suppressor gene by down-regulating CCND1 and can be used as a potential target in the treatment of osteosarcoma.
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Affiliation(s)
- Kang Han
- Department of Spinal Cord Injury, General Hospital of Jinan Military Area Command of Chinese PLA, Jinan, Shandong, People's Republic of China.,Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, People's Republic of China
| | - Xiang Chen
- Department of Baylor College of Medicine, Houston, Texas, USA
| | - Na Bian
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, People's Republic of China
| | - Baoan Ma
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, People's Republic of China
| | - Tongtao Yang
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, People's Republic of China
| | - Chengkui Cai
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, People's Republic of China
| | - QingYu Fan
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, People's Republic of China
| | - Yong Zhou
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, People's Republic of China
| | - Ting Bao Zhao
- Department of Spinal Cord Injury, General Hospital of Jinan Military Area Command of Chinese PLA, Jinan, Shandong, People's Republic of China
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Han K, Zhao T, Chen X, Bian N, Yang T, Ma Q, Cai C, Fan Q, Zhou Y, Ma B. microRNA-194 suppresses osteosarcoma cell proliferation and metastasis in vitro and in vivo by targeting CDH2 and IGF1R. Int J Oncol 2014; 45:1437-49. [PMID: 25096247 PMCID: PMC4151797 DOI: 10.3892/ijo.2014.2571] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2014] [Accepted: 07/25/2014] [Indexed: 01/15/2023] Open
Abstract
Studies have shown that miR-194 functions as a tumor suppressor and is associated with tumor growth and metastasis. We studied the effects of miR-194 in osteosarcoma and the possible mechanism by which miR-194 affected the survival, apoptosis and metastasis of osteosarcoma. Both human osteosarcoma cell lines SOSP-9607 and U2-OS were transfected with recombinant lentiviruses to regulate miR-194 expression. Overexpression of miR-194 partially inhibited the proliferation, migration, and invasion of osteosarcoma cells in vitro, as well as tumor growth and pulmonary metastasis of osteosarcoma cells in vivo. Potential miR-194 target genes were predicted using bioinformatics. Luciferase reporter assay, real-time quantitative PCR and western blotting confirmed that CDH2 (N-cadherin) and IGF1R were targets of miR-194. Using real-time quantitative PCR, we evaluated the expression of miR-194 and two miR-194 target genes, CDH2 and IGF1R in osteosarcoma samples from 107 patients and 99 formalin- or paraformalin-fixed paraffin-embedded tissues. The expressions of the target genes were also examined in osteosarcoma samples using immunohistochemistry. Overexpression of miR-194 inhibited tumor growth and metastasis of osteosarcoma probably by downregulating CDH2 and IGF1R. miR-194 may prove to be a promising therapeutic agent for osteosarcoma.
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Affiliation(s)
- Kang Han
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
| | - Tingbao Zhao
- Department of Spinal Cord Injury, General Hospital of Jinan Military Area Command of Chinese PLA, Jinan, Shandong, P.R. China
| | - Xiang Chen
- Department of Baylor College of Medicine, Houston, TX, USA
| | - Na Bian
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
| | - Tongtao Yang
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
| | - Qiong Ma
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
| | - Chengkui Cai
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
| | - Qingyu Fan
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
| | - Yong Zhou
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
| | - Baoan Ma
- Department of Orthopedic Surgery, Orthopedics Oncology Institute of Chinese PLA, Tangdu Hospital, Fourth Military Medical University, Xi'an, Shaanxi, P.R. China
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Bian N, Eramian MG, Pierson RA. Evaluation of texture features for analysis of ovarian follicular development. Med Image Comput Comput Assist Interv 2007; 9:93-100. [PMID: 17354760 PMCID: PMC3066197 DOI: 10.1007/11866763_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
We examined the echotexture in ultrasonographic images of the wall of dominant ovulatory follicles in women during natural menstrual cycles and dominant anovulatory follicles which developed in women using oral contraceptives (OC). Ovarian follicles in women are fluid-filled structures in the ovary that contain oocytes (eggs). Dominant follicles are physiologically selected for preferential development and ovulation. Statistically significant differences between the two classes of follicles were observed for two co-occurrence matrix derived texture features and two edge-frequency based texture features which allowed accurate distinction of healthy and atretic follicles of similar diameters. Trend analysis revealed consistent turning points in time series of texture features between 3 and 4 days prior to ovulation coinciding with the time at which follicles are being biologically "prepared" for ovulation.
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Affiliation(s)
- Na Bian
- Department of Computer Science, University of Saskatchewan.
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Bian N, Pierson R, Eramian M. Temporal Variation of Echotexture Features of the Dominant Ovarian Follicle’s Wall. Fertil Steril 2005. [DOI: 10.1016/j.fertnstert.2005.07.510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Zhang F, Bi S, Zhang J, Bian N, Liu F, Yang Y. Differential pulse voltammetric indirect determination of aluminium in drinking waters, blood, urine, hair, and medicament samples using L-dopa under alkaline conditions. Analyst 2000; 125:1299-302. [PMID: 10984926 DOI: 10.1039/b000862l] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The differential pulse voltammetric (DPV) indirect determination of aluminium using L-dopa under alkaline conditions on a glassy carbon working electrode was studied. The proposed method relies on the linear decrease of the DPV anodic peak current of L-dopa with increase in the concentration of aluminium added. Under the optimum experimental conditions (pH 8.5, 0.08 M NH4Cl-NH3.H2O buffer solution, and 4 x 10(-4) M L-dopa), the linear range is 2-18 x 10(-7) M AlIII. The detection limit is 7.6 x 10(-8) M and the relative standard deviation for 8 x 10(-7) M AlIII is 3.5% (n = 8). A number of foreign species were examined as potential interferents. The method was applied to the determination of aluminium in drinking waters, synthetic renal dialysate, sodium chloride injection, sucrafate, hydrothorax, blood, urine and hair samples. The physiological significance is discussed.
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Affiliation(s)
- F Zhang
- Department of Chemistry, State Key Laboratory of Coordination Chemistry of China, Nanjing University, China
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Abstract
Difficulties were encountered in labeling 5'-aminoalkyl DNA oligomers with glycolketo electrophore N-hydroxysuccinimide esters in aqueous sodium bicarbonate (a common base for this purpose), followed by C18-silica reversed-phase high-performance liquid chromatography (HPLC) to achieve purification. The electrophore-labeled oligomers were not separated readily either from the hydrolyzed electrophore or from the starting oligomer. This problem was overcome by conducting the reaction with triethylamine as a base, organic washing the reaction mixtures after evaporation, and separating on a C18-poly(styrene-divinylbenzene) HPLC packing.
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Affiliation(s)
- Z Wang
- Department of Pharmaceutical Sciences, Bouvé College of Pharmacy and Health Professions, Barnett Institute, Northeastern University, Boston, MA 02115, USA
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Xu L, Bian N, Wang Z, Abdel-Baky S, Pillai S, Magiera D, Murugaiah V, Giese RW, Wang P, O'Keeffe T, Abushamaa H, Kutney L, Church G, Carson S, Smith D, Park M, Wronka J, Laukien F. Electrophore mass tag dideoxy DNA sequencing. Anal Chem 1997; 69:3595-602. [PMID: 9286165 DOI: 10.1021/ac970066l] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Toward a goal of dideoxy sequencing DNA utilizing electrophore labels, we prepared four electrophore-labeled DNA oligonucleotide primers. Each primer has a different electrophore and DNA sequence but a common glycol keto (alpha,beta-dihydroxyketo) release group. Cleavage of this latter group by either periodate oxidation or a thermal retroaldol reaction releases the electrophores for detection by mass spectrometry. Successful sequencing data with these primers was obtained by capillary electrophoresis on an ABI Model 310 after fluorescence dideoxy terminator cycle sequencing reactions were conducted. In a separate experiment, it was demonstrated that a cocktail of the four electrophore DNA primers could be detected as a dried sample spot by CO2 laser desorption/capillary collection/gas chromatography electron capture mass spectrometry. These results establish some feasibility for our long-term goal of high-speed multiplex electrophore mass tag dideoxy DNA sequencing. Ultimately we plan to use a higher number of electrophore mass tags and to rely on direct detection of the desorbed electrophores by electron capture time-of-flight mass spectrometry.
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Affiliation(s)
- L Xu
- Department of Pharmaceutical Sciences, Bouve College of Pharmacy and Health Professions, Barnett Institute, Boston, Massachusetts, USA
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Abstract
Difluorobenzyl derivatives (several isomers were tested) of 4-hydroxyacetophenone were synthesized and found to have similar properties (retention and response) by both reversed-phase HPLC and GC-ECD relative to each other, and also relative to that of a corresponding conventional pentafluorobenzyl derivative. The same was true for a representative difluorobenzyl derivative of thymine and 1-naphthoic acid. Overall, the responses by GC-ECD for the same core structure were only about two- to four-fold lower for a difluorobenzyl compared to a corresponding pentafluorobenzyl derivative. This makes a difluorobenzyl derivative attractive as an HPLC-UV retention marker, and sometimes as a substitute for a pentafluorobenzyl derivative (to help overcome an interference) in a method based on detection by electron capture. We also observed, somewhat as an aside, that the GC-ECD response of the benzyl derivative of 4-hydroxyacetophenone was only seven-fold lower than that of the corresponding pentafluorobenzyl derivative, and that this former benzyl derivative gave a 2.10(4) higher response than acetophenone. Thus, replacing the ring hydrogen atoms of a benzyl group with fluorine atoms had a relatively small impact on both the hydrophobicity and electron capture properties of the compounds tested here.
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Affiliation(s)
- Z Wang
- Department of Pharmaceutical Sciences, Bouvé College of Pharmacy and Health Professions, Barnett Institute, Northeastern University, Boston, MA 02115, USA
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Abstract
Albumin was reacted with a mixture of six electrophore N-hydroxysuccinimide esters, each of which possessed an interior glycolketo linkage. The purpose of this linkage is to release the attached electrophore as a ketone when heated, due to a thermal retro-aldol reaction. The multiplex electrophore-labeled albumin was detected as a dried spot deposited on a polyimide membrane by laser desorption/capillary collection (of the released ketone electrophores)/off-line gas chromatography/electron capture-mass spectrometry. This encourages further study of such electrophore labels in immunoassays and related techniques, where there is a need to make advances in multi-analyte detection.
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Affiliation(s)
- N Bian
- Department of Pharmaceutical Sciences, Bouvé College of Pharmacy and Health Professions, Barnett Institute, Northeastern University, Boston, MA 02115, USA
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