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Garin V, Diallo C, Tékété ML, Théra K, Guitton B, Dagno K, Diallo AG, Kouressy M, Leiser W, Rattunde F, Sissoko I, Touré A, Nébié B, Samaké M, Kholovà J, Berger A, Frouin J, Pot D, Vaksmann M, Weltzien E, Témé N, Rami JF. Characterization of adaptation mechanisms in sorghum using a multireference back-cross nested association mapping design and envirotyping. Genetics 2024; 226:iyae003. [PMID: 38381593 PMCID: PMC10990433 DOI: 10.1093/genetics/iyae003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 12/20/2023] [Indexed: 02/23/2024] Open
Abstract
Identifying the genetic factors impacting the adaptation of crops to environmental conditions is of key interest for conservation and selection purposes. It can be achieved using population genomics, and evolutionary or quantitative genetics. Here we present a sorghum multireference back-cross nested association mapping population composed of 3,901 lines produced by crossing 24 diverse parents to 3 elite parents from West and Central Africa-back-cross nested association mapping. The population was phenotyped in environments characterized by differences in photoperiod, rainfall pattern, temperature levels, and soil fertility. To integrate the multiparental and multi-environmental dimension of our data we proposed a new approach for quantitative trait loci (QTL) detection and parental effect estimation. We extended our model to estimate QTL effect sensitivity to environmental covariates, which facilitated the integration of envirotyping data. Our models allowed spatial projections of the QTL effects in agro-ecologies of interest. We utilized this strategy to analyze the genetic architecture of flowering time and plant height, which represents key adaptation mechanisms in environments like West Africa. Our results allowed a better characterization of well-known genomic regions influencing flowering time concerning their response to photoperiod with Ma6 and Ma1 being photoperiod-sensitive and the region of possible candidate gene Elf3 being photoperiod-insensitive. We also accessed a better understanding of plant height genetic determinism with the combined effects of phenology-dependent (Ma6) and independent (qHT7.1 and Dw3) genomic regions. Therefore, we argue that the West and Central Africa-back-cross nested association mapping and the presented analytical approach constitute unique resources to better understand adaptation in sorghum with direct application to develop climate-smart varieties.
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Affiliation(s)
- Vincent Garin
- Crop Physiology Laboratory, International Crops Research Institute for the Semi-Arid Tropics, Patancheru, 502 324, India
- CIRAD, UMR AGAP Institut, Montpellier, F-34398, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Chiaka Diallo
- Sorghum Program, International Crops Research Institute for the Semi-Arid Tropics, Bamako, BP 320, Mali
- Département d’Enseignement et de Recherche des Sciences et Techniques Agricoles, Institut polytechnique rural de formation et de recherche appliquée de Katibougou, Koulikoro, BP 06, Mali
| | - Mohamed Lamine Tékété
- Institut d’Economie Rurale, Bamako, BP 262, Mali
- Faculté des Sciences et Techniques, Université des Sciences des Techniques et des Technologies de Bamako, Bamako, BP E 3206, Mali
| | | | - Baptiste Guitton
- CIRAD, UMR AGAP Institut, Montpellier, F-34398, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Karim Dagno
- Institut d’Economie Rurale, Bamako, BP 262, Mali
| | | | | | - Willmar Leiser
- Sorghum Program, International Crops Research Institute for the Semi-Arid Tropics, Bamako, BP 320, Mali
| | - Fred Rattunde
- Agronomy Department, University of Wisconsin, Madison, WI 53705, WI, USA
| | - Ibrahima Sissoko
- Sorghum Program, International Crops Research Institute for the Semi-Arid Tropics, Bamako, BP 320, Mali
| | - Aboubacar Touré
- Sorghum Program, International Crops Research Institute for the Semi-Arid Tropics, Bamako, BP 320, Mali
| | - Baloua Nébié
- Dryland Crops Program, International Maize and Wheat Improvement Center (CIMMYT-Senegal) U/C CERAAS, Thiès, Po Box 3320, Senegal
| | - Moussa Samaké
- Faculté des Sciences et Techniques, Université des Sciences des Techniques et des Technologies de Bamako, Bamako, BP E 3206, Mali
| | - Jana Kholovà
- Crop Physiology Laboratory, International Crops Research Institute for the Semi-Arid Tropics, Patancheru, 502 324, India
- Department of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Prague, 165 00, Czech Republic
| | - Angélique Berger
- CIRAD, UMR AGAP Institut, Montpellier, F-34398, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Julien Frouin
- CIRAD, UMR AGAP Institut, Montpellier, F-34398, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - David Pot
- CIRAD, UMR AGAP Institut, Montpellier, F-34398, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Michel Vaksmann
- CIRAD, UMR AGAP Institut, Montpellier, F-34398, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
| | - Eva Weltzien
- Sorghum Program, International Crops Research Institute for the Semi-Arid Tropics, Bamako, BP 320, Mali
- Agronomy Department, University of Wisconsin, Madison, WI 53705, WI, USA
| | - Niaba Témé
- Institut d’Economie Rurale, Bamako, BP 262, Mali
| | - Jean-François Rami
- CIRAD, UMR AGAP Institut, Montpellier, F-34398, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, F-34398, France
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Iboko MP, Dossou-Yovo ER, Obalum SE, Oraegbunam CJ, Diedhiou S, Brümmer C, Témé N. Paddy rice yield and greenhouse gas emissions: Any trade-off due to co-application of biochar and nitrogen fertilizer? A systematic review. Heliyon 2023; 9:e22132. [PMID: 38045115 PMCID: PMC10692810 DOI: 10.1016/j.heliyon.2023.e22132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 10/27/2023] [Accepted: 11/05/2023] [Indexed: 12/05/2023] Open
Abstract
Combined application of biochar and nitrogen (N) fertilizer could offer opportunities to increase rice yield and reduce methane emissions from paddy fields. However, this strategy may increase nitrous oxide (N2O) emissions, hence its interactive effects on GHG emissions, global warming potential (GWP) and GHG intensity (GHGI) remained poorly understood. We conducted a systematic review to i) evaluate the overall effects of combined application of biochar and N fertilizer rates on GHGs emissions, GWP, rice yield, and GHGI, ii) determine the quantities of biochar and N-fertilizer application that increase rice yield and reduce GHGs emissions and GHGI, and iii) examine the effects of biochar and different types of nitrogen fertilizers on rice yield, GHGs, GWP, and GHGI using data from 45 research articles and 183 paired observations. The extracted data were grouped based on biochar and N rates used by researchers as well as N fertiliser types. Accordingly, biochar rates were grouped into low (≤9 tons/ha), medium (>9 and ≤ 20 ton/ha) and high (>20 tons/ha), while N rates were grouped into three categories: low (≤140 kg N/ha), medium (>140 and ≤ 240 kg N/ha), and high (>240 kg N/ha). For fertiliser types, N rates were grouped as: low (≤150 kg N/ha), medium (>150 and ≤250 kg N/ha), and high (>250 kg N/ha) and N types into: urea, NPK, NPK plus urea (NPK_urea) and NPK plus (NH4)2SO4 (NPK_(NH4)2SO4). Results showed that biochar and N fertiliser significantly affected GHGs emissions, GWP, GHGI and rice yield. Compared to control (i.e., sole N application), co-application of high biochar and medium N rates significantly decreased CH4 emission (82 %) while low biochar with low N rates enhanced CH4 emission (114 %). In contrast, high biochar combined with low N decreased N2O emission by 91 % whereas medium biochar and high N rates resulted in 82 % increase in N2O emission relative to control. The highest GWP and GHGI were observed under co-application of medium biochar and low N rates. Highest rice yield was observed under low biochar rate and high N rate. Regardless of N fertiliser type and biochar rates, increasing N rates increased rice yield and N2O emissions. The highest GWP and GHGI were recorded under sole NPK application. Combination of low biochar and medium N produced low GHGs emissions, high grain yield, and the lowest GHGI, and could be recommended to smallholder farmers to increase rice yield and reduce greenhouse gas emissions from paddy rice field. Further studies should be conducted to evaluate the effects of biochar properties on soil characteristics and greenhouse gas emissions.
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Affiliation(s)
- Maduabuchi P. Iboko
- Graduate Research Program, Climate Change and Agriculture, Université des Sciences, des Techniques et des Technologies de Bamako (USTTB), Mali
- Graduate Research Program, Climate Change and Agriculture, Institut Polytechnique Rural de Formation et de Recherche Appliquée, Katibougou, Mali
- School of Agriculture, University of Cape Coast, Cape Coast, Ghana
| | | | - Sunday E. Obalum
- Department of Soil Science, University of Nigeria, Nsukka, 410001, Nigeria
| | - Chidozie J. Oraegbunam
- Global Station for Food, Land & Water Resources, Research Faculty of Agriculture, Hokkaido University, Kita 9 Nishi 9 Kita-Ku, Sapporo, Hokkaido, 060-8589, Japan
| | - Siméon Diedhiou
- Graduate Research Program, Climate Change and Agriculture, Université des Sciences, des Techniques et des Technologies de Bamako (USTTB), Mali
- Graduate Research Program, Climate Change and Agriculture, Institut Polytechnique Rural de Formation et de Recherche Appliquée, Katibougou, Mali
- School of Agriculture, University of Cape Coast, Cape Coast, Ghana
| | - Christian Brümmer
- Thünen Institute of Climate-Smart Agriculture, Bundesallee 50, 38116, Braunschweig, Germany
| | - Niaba Témé
- Labo Biotechnologie, Institute D'Economie Rurale, Sotuba, Mali
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Sanders JH, Ouendeba B, Ndoye A, Témé N, Traore S. Economics of Increasing Sorghum Productivity in Sub-Saharan Africa: The Mali Case. Methods Mol Biol 2019; 1931:223-243. [PMID: 30652294 DOI: 10.1007/978-1-4939-9039-9_16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Sorghum retains a crucial role in Sub-Saharan Africa for food and in the future feed. Unfortunately, the movement of sorghum technology onto farmers' fields in Sub-Saharan Africa has been slow in spite of substantial research since the great African drought of 1968-1973. What is necessary to get African sorghum yields and profitability up?After reviewing the situation of sorghum in the world, the USA, and Sub-Saharan Africa from 2007 to 2017 the results and the lessons of a twelve-year program in the Sahel of West Africa to introduce new sorghum technology and marketing strategies are the focus of the rest of the paper. In Mali, the program identified new technologies that were extended into a large number of farmers' associations. The Mali program then collaborated with two other agencies to scale up this pilot program. The pilot project demonstrated that yields with moderate fertilization, new varieties, and improved agronomic practices could be increased 50 to 100% and prices increased 30 to 50%. The 2012 military coup and then invasion of Al Queda from the north shut down both the pilot and the scaling up activities as the US government banned collaboration with Malian government agencies after the coup. The pilots were continued in Niger and Burkina Faso through 2014 and then with a Gates Foundation grant from 2014 to 2016. The pilot program in Mali responded to two of the three Second Generation problems identified. But more significantly the pilot project identified the lack of funds for responding to Second Generation problems as a major constraint for implementing a technology-marketing program in a low-income country.
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Affiliation(s)
- John H Sanders
- Agricultural Economics Department, Purdue University, West Lafayette, IN, USA.
| | | | | | - Niaba Témé
- Institute of Agricultural Economy, Bamako, Mali
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