|
1
|
Senchenkov VY, Lyakhovchenko NS, Nikishin IA, Myagkov DA, Chepurina AA, Polivtseva VN, Abashina TN, Delegan YA, Nikulicheva TB, Nikulin IS, Bogun AG, Solomentsev VI, Solyanikova IP. Whole-Genome Sequencing and Biotechnological Potential Assessment of Two Bacterial Strains Isolated from Poultry Farms in Belgorod, Russia. Microorganisms 2023; 11:2235. [PMID: 37764079 PMCID: PMC10537646 DOI: 10.3390/microorganisms11092235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/25/2023] [Accepted: 08/28/2023] [Indexed: 09/29/2023] Open
Abstract
Bacteria, designated as A1.1 and A1.2, were isolated from poultry waste based on the ability to form ammonia on LB nutrient medium. Whole genome sequencing identified the studied strains as Peribacillus frigoritolerans VKM B-3700D (A1.1) and Bacillus subtilis VKM B-3701D (A1.2) with genome sizes of 5462638 and 4158287 bp, respectively. In the genome of B. subtilis VKM B-3701D, gene clusters of secondary metabolites of bacillin, subtilisin, bacilisin, surfactin, bacilliacin, fengycin, sactipeptide, and ratipeptide (spore killing factor) with potential antimicrobial activity were identified. Clusters of coronimine and peninodin production genes were found in P. frigoritolerans VKM B-3700D. Information on coronimine in bacteria is extremely limited. The study of the individual properties of the strains showed that the cultures are capable of biosynthesis of a number of enzymes, including amylases. The B. subtilis VKM V-3701D inhibited the growth of bacterial test cultures and reduced the growth rate of the mold fungus Aspergillus unguis VKM F-1754 by 70% relative to the control. The antimicrobial activity of P. frigoritolerans VKM V-3700D was insignificant. At the same time, a mixture of cultures P. frigoritolerans VKM B-3700D/B. subtilis VKM B-3701D reduced the growth rate of A. unguis VKM F-1754 by 24.5%. It has been shown that strain A1.1 is able to use nitrogen compounds for assimilation processes. It can be assumed that P. frigoritolerans VKM V-3700D belongs to the group of nitrifying or denitrifying microorganisms, which may be important in developing methods for reducing nitrogen load and eutrophication.
Collapse
Affiliation(s)
- Vladislav Yu. Senchenkov
- Department of Biochemistry, Medical Institute, Belgorod State National Research University, 308015 Belgorod, Russia; (V.Y.S.); (N.S.L.)
| | - Nikita S. Lyakhovchenko
- Department of Biochemistry, Medical Institute, Belgorod State National Research University, 308015 Belgorod, Russia; (V.Y.S.); (N.S.L.)
| | - Ilya A. Nikishin
- Department of Biotechnology and Microbiology, Institute of Pharmacy, Chemistry and Biology, Belgorod State National Research University, 308015 Belgorod, Russia
| | - Dmitry A. Myagkov
- Department of Biology, Institute of Pharmacy, Chemistry and Biology, Belgorod State National Research University, 308015 Belgorod, Russia
| | - Anna A. Chepurina
- Department of Biotechnology and Microbiology, Institute of Pharmacy, Chemistry and Biology, Belgorod State National Research University, 308015 Belgorod, Russia
| | - Valentina N. Polivtseva
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center «Pushchino Scientific Center for Biological Research of Russian Academy of Sciences» (FRC PSCBR RAS), 142290 Pushchino, Russia (T.N.A.); (Y.A.D.)
| | - Tatiana N. Abashina
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center «Pushchino Scientific Center for Biological Research of Russian Academy of Sciences» (FRC PSCBR RAS), 142290 Pushchino, Russia (T.N.A.); (Y.A.D.)
| | - Yanina A. Delegan
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center «Pushchino Scientific Center for Biological Research of Russian Academy of Sciences» (FRC PSCBR RAS), 142290 Pushchino, Russia (T.N.A.); (Y.A.D.)
- State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Russia; (A.G.B.); (V.I.S.)
| | | | - Ivan S. Nikulin
- Fund of Innovative Scientific Technologies, 308518 Belgorod, Russia; (T.B.N.); (I.S.N.)
| | - Alexander G. Bogun
- State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Russia; (A.G.B.); (V.I.S.)
| | - Viktor I. Solomentsev
- State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Russia; (A.G.B.); (V.I.S.)
| | - Inna P. Solyanikova
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center «Pushchino Scientific Center for Biological Research of Russian Academy of Sciences» (FRC PSCBR RAS), 142290 Pushchino, Russia (T.N.A.); (Y.A.D.)
- Regional Microbiological Center, Belgorod State National Research University, 308015 Belgorod, Russia
| |
Collapse
|
|
2
|
Lyakhovchenko NS, Abashina TN, Polivtseva VN, Senchenkov VY, Pribylov DA, Chepurina AA, Nikishin IA, Avakova AA, Goyanov MA, Gubina ED, Churikova DA, Sirotin AA, Suzina NE, Solyanikova IP. A Blue-Purple Pigment-Producing Bacterium Isolated from the Vezelka River in the City of Belgorod. Microorganisms 2021; 9:E102. [PMID: 33466248 PMCID: PMC7824796 DOI: 10.3390/microorganisms9010102] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Revised: 12/23/2020] [Accepted: 12/30/2020] [Indexed: 02/07/2023] Open
Abstract
Violacein is a biotechnologically significant secondary metabolite due to its antibacterial, antifungal, and other properties. Isolation, research, and identification of violacein producing strains are of interest for the development of biotechnological processes, in order to enhance the biosynthesis of this compound. The purpose of the present work was to study the properties of a newly isolated bacterium capable of synthesizing blue-purple pigment. An aboriginal bacterium was isolated from the coastal zone of the Vezelka River in the city of Belgorod. Based on chemical and spectrophotometric studies of the crude ethanol extract, the pigment was identified as violacein, and the isolate was assigned to the group of violacein-forming bacteria, which includes bacteria of the genera Chromobacterium, Iodobacter, Janthinobacterium, Duganella, Collimonas, and Massilia. Based on cultural, morphological, tinctorial, physiological, and biochemical properties, as well as analysis of the 16S rRNA gene sequence, the new isolated strain was assigned to the genus Janthinobacterium. The isolated strain is capable of suppressing the growth of a number of fungal and bacterial phytopathogens. For representatives of the genus Janthinobacterium, their inhibitory influence on cyanobacteria was shown for the first time.
Collapse
Affiliation(s)
- Nikita S. Lyakhovchenko
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Tatiana N. Abashina
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Center for Biological Research of the Russian Academy of Sciences, Pushchino, 142290 Moscow, Russia; (T.N.A.); (V.N.P.); (N.E.S.)
| | - Valentina N. Polivtseva
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Center for Biological Research of the Russian Academy of Sciences, Pushchino, 142290 Moscow, Russia; (T.N.A.); (V.N.P.); (N.E.S.)
| | - Vladislav Yu. Senchenkov
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Daniil A. Pribylov
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Anna A. Chepurina
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Ilja A. Nikishin
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Alina A. Avakova
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Michael A. Goyanov
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Elizaveta D. Gubina
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Daria A. Churikova
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Alexander A. Sirotin
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
| | - Nataliya E. Suzina
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Center for Biological Research of the Russian Academy of Sciences, Pushchino, 142290 Moscow, Russia; (T.N.A.); (V.N.P.); (N.E.S.)
| | - Inna P. Solyanikova
- Federal State Autonomous Educational Institution of Higher Education, Belgorod National Research University, 308015 Belgorod, Russia; (N.S.L.); (V.Y.S.); (D.A.P.); (A.A.C.); (I.A.N.); (A.A.A.); (M.A.G.); (E.D.G.); (D.A.C.); (A.A.S.)
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Center for Biological Research of the Russian Academy of Sciences, Pushchino, 142290 Moscow, Russia; (T.N.A.); (V.N.P.); (N.E.S.)
| |
Collapse
|