Computational refocusing in phase-resolved confocal microscopy

We demonstrate numerical refocusing in coherent confocal laser scanning microscopy based on synthetic optical holography. In this physics-based approach, computational propagation is implemented on the complex signal recovered in synthetic holography, consistent with wave physics and the parameters of the microscope. An experimental demonstration is shown to restore an in-focus image of a test object from data acquired at several focal plane off-sets. Numerical refocusing can provide focused views on samples with large height variation, with a potential application in confocal optical surface profiling.

100 years of Emil Wolf: introduction

The groundbreaking research and ideas introduced by Emil Wolf continue to inspire researchers and motivate ongoing research in the wave properties of light. This special issue commemorates the legacy of Emil Wolf with research in physical optics, with specific focus on those areas where Wolf was active, such as optical coherence theory, inverse problems, singular optics, imaging, and polarization, and the intersection of these fields of study. Here we discuss the life of Emil Wolf and his influence on optical science and the optics community.

Suppression of the conjugate signal for broadband computed imaging via synthetic phase modulation

We present synthetic-phase-modulated interferometric synthetic aperture microscopy (SPM-ISAM), a method to perform 3D object reconstructions from data acquired with confocal broadband interferometric microscopy (BIM) that reconstructs images virtually free of coherent and depth-dependent defocus artifacts. This is achieved by implementing a sinusoidal SPM method in combination with an ISAM reconstruction algorithm that uses relatively low-modulation frequencies compared with acquisition frequencies. A theoretical framework and numerical results are provided here.

Resolution Limit in Infrared Chemical Imaging

Chemical imaging combines the spatial specificity of optical microscopy with the spectral selectivity of vibrational spectroscopy. Mid-infrared (IR) absorption imaging instruments are now able to capture high-quality spectra with microscopic spatial detail, but the limits of their ability to resolve spatial and spectral objects remain less understood. In particular, the sensitivity of measurements to chemical and spatial changes and rules for optical design have been presented, but the influence of spectral information on spatial sensitivity is as yet relatively unexplored. We report an information theory-based approach to quantify the spatial localization capability of spectral data in chemical imaging. We explicitly consider the joint effects of the signal-to-noise ratio and spectral separation that have significance in experimental settings to derive resolution limits in IR spectroscopic imaging.

Math, color, and new additions to the team: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's newest Topical Editors, John Schotland and Minchen Wei.

Extraordinary Fluorescence Enhancement in Metal-Dielectric Core-Shell Nanoparticles

We show that in metal-dielectric core-shell nanoparticles, unusually thick dielectric coatings can produce extreme fluorescence enhancement with an enhancement factor F̅ ≳ 3000 for emitters located on the surface or in the interior of the shell of Au@dielectric spherical particles under realistic conditions, even for the emitters with 100% intrinsic quantum yield. Thick dielectric coatings facilitate high-quality transverse electric (TE) multipole (l = 7) resonances which are shown as the major cause for the reported extraordinary values of F̅.

2020 JOSA A Emerging Researcher Best Paper Prize: editorial

JOSA A Editor-in-Chief P. Scott Carney, Feature Editor Johannes Courtial, and members of the 2020 Emerging Researcher Best Paper Prize Committee announce the recipient of the 2020 prize for the best paper published by an emerging researcher in the Journal.

Optics in your part of the world and a new Topical Editor joins the team: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's newest Topical Editor, Angela Dudley.

Photons to the left, photons to the right, photons down under: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's newest Topical Editor, Arti Agrawal.

2019 JOSA A Emerging Researcher Best Paper Prize: editorial

JOSA A Editor-in-Chief P. Scott Carney and Feature Editor Johannes Courtial announce the recipient of the 2019 prize for the best paper published by an emerging researcher in the Journal.

Intriguing branching of the maximum position of the absorption cross section in Mie theory explained

A potential control over the position of maxima of scattering and absorption cross sections can be exploited to better tailor nanoparticles for specific light-matter interaction applications. Here we explain in detail the mechanism of an appreciable blue shift of the absorption cross-section peak relative to a metal spherical particle localized surface plasmon resonance (LSPR) defined as the maximum of the extinction (and scattering) cross section. Such a branching of cross sections' maxima requires a certain threshold value of size parameter (x≈0.7 for dipole channel) and is a prerequisite for obtaining high fluorescence enhancements, because the spectral region of high radiative rate enhancement becomes separated from the spectral region of high non-radiative rate enhancement. A consequence is that the maximum of the absorption cross section cannot be used as the definition of the LSPR position for x≳0.7.

New Feature Editor and Topical Editor: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's new Feature Editor and newest Topical Editor.

Plasmonic nano-shells: atomistic discrete interaction versus classic electrodynamics models

Using the extended discrete interaction model and Mie theory, we investigate the tunability of the optical polarizability of small metallic nano-shells. We show that the spectral positions of symmetric and antisymmetric dipolar plasmon resonances vary with the ratio of particle radius to hole radius in a manner similar to one predicted for uniform metallic nano-shells using a semiclassical approach of two coupled harmonic oscillators. We show that, according to the extended discrete interaction model, the dipolar plasmon resonances are also present for nano-shells in the 2-13 nm size region and show the same functional dependence seen for larger nano-shells. Using previously fitted data from experiment, we can predict the size-dependence of the plasma frequency for nano-shells in the 1-15 nm size region. We find that Mie theory, which utilizes the electron mean free path correction for the permittivity, is not able to reproduce the same functional form of the dipolar modes for the nano-shells of the same sizes.

Fellows, visionary and atmospheric, and a new addition to the team: editorial

Editor-in-Chief P. Scott Carney congratulates recent awardees and introduces the Journal's newest Topical Editor.

Turning the page: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's newest Topical Editors, Irina V. Larina and Jonathan Petruccelli.

Doing good by writing well for JOSA A: editorial

Editor-in-Chief P. Scott Carney gives his thoughts on good writing for scientific publication.

Success is in the air for JOSA A: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's newest Topical Editor, Svetlana Avramov-Zamurovic.

Electromagnetic energy in multilayered spherical particles

We obtain exact analytic expressions for (i) the electromagnetic energy radial density within and outside a multilayered sphere and (ii) the total electromagnetic energy stored within its core and each of its shells. Explicit expressions for the special cases of lossless core and shell are also provided. The general solution is based on the compact recursive transfer-matrix method, and its validity includes also magnetic media. The theory is illustrated on examples of electric field enhancement within various metallo-dielectric silica-gold multilayered spheres. The user-friendly MATLAB code, which includes the theoretical treatment, is available as a supplement to the paper.

Extended Multiplicative Signal Correction for Infrared Microspectroscopy of Heterogeneous Samples with Cylindrical Domains

Optical scattering corrections are invoked to computationally distinguish between scattering and absorption contributions to recorded data in infrared (IR) microscopy, with a goal to obtain an absorption spectrum that is relatively free of the effects of sample morphology. Here, we present a modification of the extended multiplicative signal correction (EMSC) approach that allows for spectral recovery from fibers and cylindrical domains in heterogeneous samples. The developed theoretical approach is based on exact Mie theory for infinite cylinders. Although rigorous Mie theory implies utilization of comprehensive and time-consuming calculations, we propose to change the workflow of the original EMSC algorithm to minimize extensive calculations for each recorded spectrum at each iteration step. This makes the modified EMSC approach practical for routine use. First, we tested our approach using synthetic data derived from a rigorous model of scattering from cylinders in an IR microscope. Second, we applied the approach to Fourier transform IR (FT-IR) microspectroscopy data recorded from filamentous fungal and cellulose samples with pronounced fiber-like shapes. While the corrected spectra show greatly reduced baseline offsets and consistency, strongly absorbing regions of the spectrum require further refinement. The modified EMSC algorithm broadly mitigates the effects of scattering, offering a practical approach to more consistent and accurate spectra from cylindrical objects or heterogeneous samples with cylindrical domains.

New Journal prize to recognize the best paper from an emerging researcher: editorial

Editor-in-Chief P. Scott Carney and Deputy Editor Christine Fernandez-Maloigne introduce a new prize for the best paper published by an emerging researcher in the Journal in 2018.

Accessible quantitative phase imaging in confocal microscopy with sinusoidal-phase synthetic optical holography

We present a technically simple implementation of quantitative phase imaging in confocal microscopy based on synthetic optical holography with sinusoidal-phase reference waves. Using a Mirau interference objective and low-amplitude vertical sample vibration with a piezo-controlled stage, we record synthetic holograms on commercial confocal microscopes (Nikon, model: A1R; Zeiss: model: LSM-880), from which quantitative phase images are reconstructed. We demonstrate our technique by stain-free imaging of cervical (HeLa) and ovarian (ES-2) cancer cells and stem cell (mHAT9a) samples. Our technique has the potential to extend fluorescence imaging applications in confocal microscopy by providing label-free cell finding, monitoring cell morphology, as well as non-perturbing long-time observation of live cells based on quantitative phase contrast.

Expanding the JOSA A team: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's newest Topical Editor, Jinli Suo.

Complementary use of polarization-sensitive and standard OCT metrics for enhanced intraoperative differentiation of breast cancer

We report the development and implementation of an intraoperative polarization-sensitive optical coherence tomography (PS-OCT) system for enhancing breast cancer detection. A total of 3440 PS-OCT images were intraoperatively acquired from 9 human breast specimens diagnosed by H&E histology as healthy fibro-adipose tissue (n = 2), healthy stroma (n = 2), or invasive ductal carcinoma (IDC, n = 5). A standard OCT-based metric (coefficient of variation (CV)) and PS-OCT-based metrics sensitive to biological tissue from birefringence (i.e., retardation and degree of polarization uniformity (DOPU)) were derived from 398 statistically different and independent images selected by correlation coefficient analysis. We found the standard OCT-based metric and PS-OCT-based metrics were complementary for the differentiation of healthy fibro-adipose tissue, healthy stroma, and IDC. While the CV of fibro-adipose tissue was significantly higher (p<0.001) than those of either stroma or IDC, the CV difference between stroma and IDC was minimal. On the other hand, stroma was associated with significantly higher (p<0.001) retardation and significantly lower (p<0.001) DOPU as compared to IDC. By leveraging the complementary information acquired by the intraoperative PS-OCT system, healthy fibro-adipose tissue, healthy stroma, and IDC can be differentiated with an accuracy of 89.4%, demonstrating the potential of PS-OCT as an adjunct modality for enhanced intraoperative differentiation of human breast cancer.

A new topical editor for JOSA A: editorial

Editor-in-Chief P. Scott Carney introduces the Journal's newest Topical Editor, Yangjian Cai.

Transient vibration imaging with time-resolved synthetic holographic confocal microscopy

We introduce a new modality for dynamic phase imaging in confocal microscopy based on synthetic optical holography. By temporal demultiplexing of the detector signal into a series of holograms, we record time-resolved phase images directly in the time domain at a bandwidth as determined by the photo detector and digitizer. We demonstrate our method by optical imaging of transient vibrations in an atomic force microscope cantilever with 100 ns time resolution, and observe the dynamic deformation of the cantilever surface after excitation with broadband mechanical pulses. Temporal Fourier transform of a single data set acquired in 4.2 minutes yields frequency and mode profile of all excited out-of-plane vibration modes with sub-picometer vertical sensitivity and sub-micrometer lateral resolution. Our method has the potential for transient and spectroscopic vibration imaging of micromechanical systems at nano-and picosecond scale time resolution.

Self-plagiarism and conference papers: editorial

Editor-in-Chief P. Scott Carney and Topical Editor Samuel T. Thurman discuss self-plagiarism and conference papers.

Wavefront measurement using computational adaptive optics

In many optical imaging applications, it is necessary to correct for aberrations to obtain high quality images. Optical coherence tomography (OCT) provides access to the amplitude and phase of the backscattered optical field for three-dimensional (3D) imaging samples. Computational adaptive optics (CAO) modifies the phase of the OCT data in the spatial frequency domain to correct optical aberrations without using a deformable mirror, as is commonly done in hardware-based adaptive optics (AO). This provides improvement of image quality throughout the 3D volume, enabling imaging across greater depth ranges and in highly aberrated samples. However, the CAO aberration correction has a complicated relation to the imaging pupil and is not a direct measurement of the pupil aberrations. Here we present new methods for recovering the wavefront aberrations directly from the OCT data without the use of hardware adaptive optics. This enables both computational measurement and correction of optical aberrations.

Getting it right at JOSA A: editorial

Editor-in-Chief P. Scott Carney discusses the importance of corrections to the published literature.

A new year, new editors, and new honors: editorial

Editor-in-Chief P. Scott Carney congratulates recent awardees and introduces the Journal's newest Topical Editors.

Two years of tutorials: editorial

Editor-in-Chief P. Scott Carney gives an update on JOSA A tutorials.

Dielectric Sphere Clusters as a Model to Understand Infrared Spectroscopic Imaging Data Recorded from Complex Samples

Understanding the infrared (IR) spectral response of materials as a function of their morphology is not only of fundamental importance but also of contemporary practical need in the analysis of biological and synthetic materials. While significant work has recently been reported in understanding the spectra of particles with well-defined geometries, we report here on samples that consist of collections of particles. First, we theoretically model the importance of multiple scattering effects and computationally predict the impact of local particles' environment on the recorded IR spectra. Both monodisperse and polydisperse particles are considered in clusters with various degrees of packing. We show that recorded spectra are highly dependent on the cluster morphology and size of particles but the origin of this dependence is largely due to the scattering that depends on morphology and not absorbance that largely depends on the volume of material. The effect of polydispersity is to reduce the fine scattering features in the spectrum, resulting in a closer resemblance to bulk spectra. Fourier transform-IR (FT-IR) spectra of clusters of electromagnetically coupled poly(methyl methacrylate) (PMMA) spheres with wavelength-scale diameters were recorded and compared to simulated results. Measured spectra agreed well with those predicted. Of note, when PMMA spheres occupy a volume greater than 18% of the focal volume, the recorded IR spectrum becomes almost independent of the cluster's morphological changes. This threshold, where absorbance starts to dominate the signal, exactly matches the percolation threshold for hard spheres and quantifies the transition between the single particle and bulk behavior. Our finding enables an understanding of the spectral response of structured samples and points to appropriate models for recovering accurate chemical information from in IR microspectroscopy data.

Synthetic aperture imaging in astronomy and aerospace: introduction

Aperture synthesis methods allow the reconstruction of images with the angular resolutions exceeding that of extremely large monolithic apertures by using arrays of smaller apertures together in combination. In this issue we present several papers with techniques relevant to amplitude interferometry, laser radar, and intensity interferometry applications.

Computational optical coherence tomography [Invited]

Optical coherence tomography (OCT) has become an important imaging modality with numerous biomedical applications. Challenges in high-speed, high-resolution, volumetric OCT imaging include managing dispersion, the trade-off between transverse resolution and depth-of-field, and correcting optical aberrations that are present in both the system and sample. Physics-based computational imaging techniques have proven to provide solutions to these limitations. This review aims to outline these computational imaging techniques within a general mathematical framework, summarize the historical progress, highlight the state-of-the-art achievements, and discuss the present challenges.

BIM-Sim: Interactive Simulation of Broadband Imaging Using Mie Theory

Understanding the structure of a scattered electromagnetic (EM) field is critical to improving the imaging process. Mechanisms such as diffraction, scattering, and interference affect an image, limiting the resolution, and potentially introducing artifacts. Simulation and visualization of scattered fields thus plays an important role in imaging science. However, EM fields are high-dimensional, making them time-consuming to simulate, and difficult to visualize. In this paper, we present a framework for interactively computing and visualizing EM fields scattered by micro and nano-particles. Our software uses graphics hardware for evaluating the field both inside and outside of these particles. We then use Monte-Carlo sampling to reconstruct and visualize the three-dimensional structure of the field, spectral profiles at individual points, the structure of the field at the surface of the particle, and the resulting image produced by an optical system.

Congratulations and changes to the JOSA A team: editorial

Editor-in-Chief P. Scott Carney introduces new Topical Editors Antigone Marino and Alessandro Rizzi.

The professional team at JOSA A: editorial

Editor-in-Chief P. Scott Carney closes a year of celebration and recognizes the staff who have produced the Journal for 100 years.

Image science at JOSA A: editorial

Editor-in-Chief P. Scott Carney discusses the scope of image science in JOSA A and introduces new topical editor Amit Ashok.

Filtering for unwrapping noisy Doppler optical coherence tomography images for extended microscopic fluid velocity measurement range

In this Letter, we report the first application of two phase denoising algorithms to Doppler optical coherence tomography (DOCT) velocity maps. When combined with unwrapping algorithms, significantly extended fluid velocity dynamic range is achieved. Instead of the physical upper bound, the fluid velocity dynamic range is now limited by noise level. We show comparisons between physical simulated ideal velocity maps and the experimental results of both algorithms. We demonstrate unwrapped DOCT velocity maps having a peak velocity nearly 10 times the theoretical measurement range.

Computed Optical Interferometric Imaging: Methods, Achievements, and Challenges

Three-dimensional high-resolution optical imaging systems are generally restricted by the trade-off between resolution and depth-of-field as well as imperfections in the imaging system or sample. Computed optical interferometric imaging is able to overcome these longstanding limitations using methods such as interferometric synthetic aperture microscopy (ISAM) and computational adaptive optics (CAO) which manipulate the complex interferometric data. These techniques correct for limited depth-of-field and optical aberrations without the need for additional hardware. This paper aims to outline these computational methods, making them readily available to the research community. Achievements of the techniques will be highlighted, along with past and present challenges in implementing the techniques. Challenges such as phase instability and determination of the appropriate aberration correction have been largely overcome so that imaging of living tissues using ISAM and CAO is now possible. Computed imaging in optics is becoming a mature technology poised to make a significant impact in medicine and biology.

Automated interferometric synthetic aperture microscopy and computational adaptive optics for improved optical coherence tomography

In this paper, we introduce an algorithm framework for the automation of interferometric synthetic aperture microscopy (ISAM). Under this framework, common processing steps such as dispersion correction, Fourier domain resampling, and computational adaptive optics aberration correction are carried out as metrics-assisted parameter search problems. We further present the results of this algorithm applied to phantom and biological tissue samples and compare with manually adjusted results. With the automated algorithm, near-optimal ISAM reconstruction can be achieved without manual adjustment. At the same time, the technical barrier for the nonexpert using ISAM imaging is also significantly lowered.

The dedicated volunteers of JOSA A: editorial

Editor-in-Chief P. Scott Carney introduces the JOSA A topical editors.

Celebrating the new and old: editorial

New editor-in-chief P. Scott Carney makes some opening remarks and comments on special OSA Centennial activities this year at JOSA A.

Introducing JOSA A tutorials: editorial

We describe the new tutorial article type in detail and give some background on the reasons for its introduction.

Polarization-sensitive interferometric synthetic aperture microscopy

Three-dimensional optical microscopy suffers from the well-known compromise between transverse resolution and depth-of-field. This is true for both structural imaging methods and their functional extensions. Interferometric synthetic aperture microscopy (ISAM) is a solution to the 3D coherent microscopy inverse problem that provides depth-independent transverse resolution. We demonstrate the extension of ISAM to polarization sensitive imaging, termed polarization-sensitive interferometric synthetic aperture microscopy (PS-ISAM). This technique is the first functionalization of the ISAM method and provides improved depth-of-field for polarization-sensitive imaging. The basic assumptions of polarization-sensitive imaging are explored, and refocusing of birefringent structures is experimentally demonstrated. PS-ISAM enables high-resolution volumetric imaging of birefringent materials and tissue.

Intraoperative Assessment of Final Margins with a Handheld Optical Imaging Probe During Breast-Conserving Surgery May Reduce the Reoperation Rate: Results of a Multicenter Study

BACKGROUND

A multicenter, prospective, blinded study was performed to test the feasibility of using a handheld optical imaging probe for the intraoperative assessment of final surgical margins during breast-conserving surgery (BCS) and to determine the potential impact on patient outcomes.

METHODS

Forty-six patients with early-stage breast cancer (one with bilateral disease) undergoing BCS at two study sites, the Johns Hopkins Hospital and Anne Arundel Medical Center, were enrolled in this study. During BCS, cavity-shaved margins were obtained and the final margins were examined ex vivo in the operating room with a probe incorporating optical coherence tomography (OCT) hardware and interferometric synthetic aperture microscopy (ISAM) image processing. Images were interpreted after BCS by three physicians blinded to final pathology-reported margin status. Individual and combined interpretations were assessed. Results were compared to conventional postoperative histopathology.

RESULTS

A total of 2,191 images were collected and interpreted from 229 shave margin specimens. Of the eight patients (17 %) with positive margins (0 mm), which included invasive and in situ diseases, the device identified all positive margins in five (63%) of them; reoperation could potentially have been avoided in these patients. Among patients with pathologically negative margins (>0 mm), an estimated mean additional tissue volume of 10.7 ml (approximately 1% of overall breast volume) would have been unnecessarily removed due to false positives.

CONCLUSIONS

Intraoperative optical imaging of specimen margins with a handheld probe potentially eliminates the majority of reoperations.

On the importance of image formation optics in the design of infrared spectroscopic imaging systems

Infrared spectroscopic imaging provides micron-scale spatial resolution with molecular contrast. While recent work demonstrates that sample morphology affects the recorded spectrum, considerably less attention has been focused on the effects of the optics, including the condenser and objective. This analysis is extremely important, since it will be possible to understand effects on recorded data and provides insight for reducing optical effects through rigorous microscope design. Here, we present a theoretical description and experimental results that demonstrate the effects of commonly-employed cassegranian optics on recorded spectra. We first combine an explicit model of image formation and a method for quantifying and visualizing the deviations in recorded spectra as a function of microscope optics. We then verify these simulations with measurements obtained from spatially heterogeneous samples. The deviation of the computed spectrum from the ideal case is quantified via a map which we call a deviation map. The deviation map is obtained as a function of optical elements by systematic simulations. Examination of deviation maps demonstrates that the optimal optical configuration for minimal deviation is contrary to prevailing practice in which throughput is maximized for an instrument without a sample. This report should be helpful for understanding recorded spectra as a function of the optics, the analytical limits of recorded data determined by the optical design, and potential routes for optimization of imaging systems.

Policy, procedures, and goals at JOSA A: editorial

Editorial policy and procedures are described for the benefit of potential authors and reviewers. These policies are described in the context of our goals for the journal.

Compositional prior information in computed infrared spectroscopic imaging

Compositional prior information is used to bridge a gap in the theory between optical coherence tomography (OCT), which provides high-resolution structural images by neglecting spectral variation, and imaging spectroscopy, which provides only spectral information without significant regard to structure. A constraint is proposed in which it is assumed that a sample is composed of N distinct materials with known spectra, allowing the structural and spectral composition of the sample to be determined with a number of measurements on the order of N. We present a forward model for a sample with heterogeneities along the optical axis and show through simulation that the N-species constraint allows unambiguous inversion of Fourier transform interferometric data within the spatial frequency passband of the optical system. We then explore the stability and limitations of this model and extend it to a general 3D heterogeneous sample.

Enhancement and extinction effects in surface-enhanced stimulated Raman spectroscopy

We address the optical physics of surface-enhanced stimulated Raman spectroscopy (SESRS) from the microscopic to macroscopic scales to provide experimental design criteria in colloidal-suspension SESRS. The nanoparticles that provide local field enhancement also extinguish the Raman signal. We compute the total Raman signal detected from a suspension of Raman-active molecules and nanoparticles due to the cumulative effects of enhancement and extinction and find optimum operating parameters for pump frequency and nanoparticle concentration.