Isolation and Characterization of Bacterial Endophytes from Small Nodules of Field-Grown Peanut

It is evident that legume root nodules can accommodate rhizobial and non-rhizobial bacterial endophytes. Our recent nodule microbiome study in peanuts described that small nodules can harbor diverse bacterial endophytes. To understand their functional role, we isolated 87 indigenous endophytes from small nodules of field-grown peanut roots and characterized them at molecular, biochemical, and physiological levels. The amplified 16S rRNA genes and phylogenetic analysis of these isolates revealed a wide variety of microorganisms related to the genera Bacillus, Burkholderia, Enterobacter, Herbaspirillum, Mistsuaria, Pantoea, Pseudomonas, and Rhizobia. It was observed that 37% (100% identity) and 56% (>99% identity) of the isolates matched with the amplified sequence variants (ASVs) from our previous microbiome study. All of these isolates were tested for stress tolerance (high temperature, salinity, acidic pH) and phosphate (P) solubilization along with ammonia (NH3), indole-3-acetic acid (IAA), 1-aminocyclopropane-1-carboxylate deaminase (ACCD), and siderophore production. The majority (78%) of the isolates were found to be halotolerant, thermotolerant, and acidophilic, and a few of them showed a significant positive response to the production of IAA, NH3, siderophore, ACCD, and P-solubilization. To evaluate the plant growth promotion (PGP) activity, plant and nodulation assays were performed in the growth chamber conditions for the selected isolates from both the non-rhizobial and rhizobial groups. However, these isolates appeared to be non-nodulating in the tested conditions. Nonetheless, the isolates 2 (Pantoea), 17 (Burkholderia), 21 (Herbaspirillum), 33o (Pseudomonas), and 77 (Rhizobium sp.) showed significant PGP activity in terms of biomass production. Our findings indicate that these isolates have potential for future biotechnological applications through the development of biologicals for sustainable crop improvement.

Microbiome analysis revealed distinct microbial communities occupying different sized nodules in field-grown peanut

Legume nodulation is the powerhouse of biological nitrogen fixation (BNF) where host-specific rhizobia dominate the nodule microbiome. However, other rhizobial or non-rhizobial inhabitants can also colonize legume nodules, and it is unclear how these bacteria interact, compete, or combinedly function in the nodule microbiome. Under such context, to test this hypothesis, we conducted 16S-rRNA based nodule microbiome sequencing to characterize microbial communities in two distinct sized nodules from field-grown peanuts inoculated with a commercial inoculum. We found that microbial communities diverged drastically in the two types of peanut nodules (big and small). Core microbial analysis revealed that the big nodules were inhabited by Bradyrhizobium, which dominated composition (>99%) throughout the plant life cycle. Surprisingly, we observed that in addition to Bradyrhizobium, the small nodules harbored a diverse set of bacteria (~31%) that were not present in big nodules. Notably, these initially less dominant bacteria gradually dominated in small nodules during the later plant growth phases, which suggested that native microbial communities competed with the commercial inoculum in the small nodules only. Conversely, negligible or no competition was observed in the big nodules. Based on the prediction of KEGG pathway analysis for N and P cycling genes and the presence of diverse genera in the small nodules, we foresee great potential of future studies of these microbial communities which may be crucial for peanut growth and development and/or protecting host plants from various biotic and abiotic stresses.

Long-term effects of grazing management and buffer strips on phosphorus runoff from pastures fertilized with poultry litter

Phosphorus (P) runoff from pastures can cause accelerated eutrophication of surface waters. However, few long-term studies have been conducted on the effects of best management practices, such as rotational grazing and/or buffer strips on P losses from pastures. The objective of this study was to evaluate the long-term effects of grazing management and buffer strips on P runoff from pastures receiving annual (5.6 Mg ha^-1 ) poultry litter applications. A 14-yr study was conducted on 15 small watersheds (0.14 ha) with five treatments: hayed (H), continuously grazed (CG), rotationally grazed (R), rotationally grazed with an unfertilized buffer strip (RB), and rotationally grazed with an unfertilized fenced riparian buffer (RBR). Runoff samples were collected using automatic samplers during runoff events. Average annual runoff volumes from H (40 mm yr^-1 ) and RBR (48 mm yr^-1 ) were lower than CG and RB, which were both 65 mm yr^-1 , and from R (67 mm yr^-1 ). Rotational grazing alone did not reduce P loads compared with continuous grazing (1.88 and 1.71 kg P ha^-1 for R and CG, respectively). However, compared with CG, total P losses from RB pastures were reduced 36% with unfertilized buffer strips (1.21 kg P ha^-1 ), 60% in RBR watersheds with unfertilized fenced riparian buffer strips (0.74 kg P ha^-1 ), and 49% by converting pastures to hayfields (0.97 kg P ha^-1 ). Hence, the use of unfertilized buffer strips, unfertilized fenced riparian buffer strips, or converting pastures to hayfields are effective best management practices for reducing P runoff in U.S. pasture systems.

Grazing Management and Buffer Strip Impact on Nitrogen Runoff from Pastures Fertilized with Poultry Litter

Nitrogen runoff from pastures fertilized with animal manure, such as poultry litter, can result in accelerated eutrophication. The objective of this study was to evaluate the long-term effects of grazing management and buffer strips on N runoff from pastures fertilized with poultry litter. A 12-yr study was conducted on 15 small watersheds in Booneville, AR, using five management practices: continuous grazing, haying, rotational grazing, rotational grazing with an unfertilized buffer strip, and rotational grazing with a fenced unfertilized riparian buffer. Poultry litter was applied annually at a rate of 5.6 Mg ha. Concentrations and loads of total N, NO-N, NH-N, organic N, and total organic C in runoff varied intra- and interannually and coincided with precipitation trends. Overall, the greatest component of total N in runoff was organic N. Rotational grazing resulted in the highest concentrations and loads of all forms of N in runoff compared with other treatments, including the continuously grazed paddocks, which were grazed almost twice as much. Total organic C concentrations and loads in runoff were also higher from rotationally grazed watersheds than other treatments. Rotational grazing is considered a best management practice that typically reduces soil erosion; hence, the mechanism by which it caused higher N and C runoff is unclear. Nitrogen runoff losses from rotationally grazed pastures were reduced by 44% with unfertilized buffer strips, by 54% with fenced unfertilized riparian buffers, and by 52% by converting pastures to hayfields.

Phosphorus Leaching from Soil Cores from a Twenty-Year Study Evaluating Alum Treatment of Poultry Litter

Adding alum to poultry litter is a best management practice used to stabilize P in less soluble forms, reducing nonpoint-source P runoff. However, little research has been conducted on how alum additions to litter affect subsequent leaching of P from soil. The objective of this study was to evaluate the effects of alum-treated versus untreated poultry litter on P leaching from soil cores receiving long-term poultry litter applications. Two intact soil cores were taken from each of 52 plots in a long-term study with 13 treatments: a control, four rates each of untreated and alum-treated litter (2.24, 4.49, 6.72, and 8.96 Mg ha), and four rates of ammonium nitrate (65, 130, 195, and 260 kg N ha). One core from each plot received the same fertilizer as for the previous 20 yr, whereas the other was unfertilized in the study year, resulting in a total of 25 treatments. Cores were exposed to natural rainfall, and P leaching was measured for 1 yr. The average soluble reactive P concentrations in the leachate varied from 0.16 to 0.44 mg P L in fertilized alum-treated cores, whereas leachate from cores fertilized with untreated litter ranged from 0.40 to 2.64 mg P L. At the highest litter rate (8.96 Mg ha), alum reduced total dissolved P and total P concentrations in leachate by 83 and 80%, respectively, compared with untreated litter. These results indicate that alum additions to poultry litter significantly reduced soluble and total P fractions in leachate.

Effects of Grazing Management and Buffer Strips on Metal Runoff from Pastures Fertilized with Poultry Litter

Metal runoff from fields fertilized with poultry litter may pose a threat to aquatic systems. Buffer strips located adjacent to fields may reduce nutrients and solids in runoff. However, scant information exists on the long-term effects of buffer strips combined with grazing management on metal runoff from pastures. The objective of this study was to assess the 12-yr impact of grazing management and buffer strips on metal runoff from pastures receiving poultry litter. The research was conducted using 15 watersheds (25 m wide and 57 m long) with five treatments: hayed (H), continuously grazed (CG), rotationally grazed (R), rotationally grazed with a buffer strip (RB), and rotationally grazed with a fenced riparian buffer strip (RBR). Poultry litter was applied annually in spring at 5.6 Mg ha. Runoff samples were collected after every rainfall event. Aluminum (Al) and iron (Fe) concentrations were strongly and positively correlated with total suspended solids, indicating soil erosion was the primary source. Soluble Al and Fe were not related to total Al and Fe. However, there was a strong positive correlation between soluble and total copper (Cu) concentrations. The majority of total Cu and zinc was in water-soluble form. The CG treatment had the highest metal concentrations and loads of all treatments. The RBR and H treatments resulted in lower concentrations of total Al, Cu, Fe, potassium, manganese, and total organic carbon in the runoff. Rotational grazing with a fenced riparian buffer and converting pastures to hayfields appear to be effective management systems for decreasing concentrations and loads of metals in surface runoff from pastures fertilized with poultry litter.

Copper and Zinc Runoff from Land Application of Composted Poultry Litter

Regions with long-term animal manure applications based on nitrogen (N) requirements have concerns regarding elevated nutrient levels. Most attention has focused on phosphorus (P), but heavy metal accumulation has received attention due to perceived environmental concerns. Composting is a potential management practice that can reduce total manure mass and volume while creating a stabilized product that has less odor and fewer pathogens. However, composting animal manures can lead to high N loss via ammonia volatilization and increased concentrations of nonvolatile nutrients. The objective of this study was to measure copper (Cu) and zinc (Zn) concentrations in runoff water from plots fertilized with composted and fresh poultry litter. Seven treatments were evaluated in the first year: (i) unfertilized control, (ii) fresh poultry litter, (iii) normal compost (no amendment), (iv) composted litter with alum, (v) composted litter with phosphoric acid, (vi) composted litter with a microbial mixture, and (vii) composted litter with alum + microbial mixture. Six of these treatments were evaluated in Year 2 (alum + microbial mixture was not evaluated in Year 2). Rainfall simulators were used to produce a 5 cm h storm event sufficient in length to cause 30 min of continuous runoff. Concentrations of Cu and Zn were elevated in compost compared with fresh poultry litter. However, metal concentrations in compost did not correlate well with metal concentrations in runoff water and may have been affected by compost maturity and amendment. Total Cu and Zn concentrations in runoff water did not differ between alum-amended compost and fresh poultry litter in each year.

Factors affecting arsenic and copper runoff from fields fertilized with poultry litter

Arsenic (As) and copper (Cu) runoff from fields fertilized with poultry litter has received increasing attention in recent years, although it is not known if heavy metal runoff from poultry litter poses a significant threat to the environment. The objective of this study was to determine the main factors affecting As and Cu concentrations in runoff water from pastures receiving poultry litter applications. Rainfall simulation studies were conducted to determine the effects of the following treatments on metal runoff: (i) aluminum sulfate (alum) additions, (ii) diet modification using phytase or high available phosphorus corn, (iii) fertilizer type, (iv) poultry litter application rate, and (v) time until the first runoff event occurs after poultry litter application. Results showed that alum additions to poultry litter significantly decreased As and Cu concentrations in runoff water. Copper concentrations were highest in runoff from poultry litter from birds fed phytase diets compared with other diets; however, this effect may have been a result of wet storage conditions rather than diet. Triple superphosphate applications resulted in the lowest heavy metal concentrations in runoff water among all fertilizer treatments, while normal poultry litter resulted in the highest concentrations. Arsenic and Cu concentrations increased in runoff water as poultry litter application rates increased and decreased with increasing time until the first runoff event. These data indicate that adding alum to poultry litter, a cost-effective best management practice, which also results in lower P runoff and ammonia emissions, may also be an effective tool in reducing metal runoff.

Effects of long-term poultry litter application on phosphorus soil chemistry and runoff water quality

Continuous application of poultry litter (PL) significantly changes many soil properties, including soil test P (STP); Al, Fe, and Ca concentrations; and pH, which can affect the potential for P transport in surface runoff water. We conducted rainfall simulations on three historically acidic silt loam soils in Arkansas, Missouri, and Virginia to establish if long-term PL applications would affect soil inorganic P fractions and the resulting dissolved reactive P (DRP) in runoff water. Soil samples (0-5 cm depth) were taken to find sites ranging in Mehlich-3 STP from 20 to 1154 mg P kg. Simulated rainfall events were conducted on 3-m plots at 6.7 cm h, and runoff was collected for 30 min. Correlation between Mehlich-3 and runoff DRP indicated a linear relationship to 833 mg Mehlich-3 P kg. As Mehlich-3 STP increased, a concomitant increase in soil pH and Ca occurred on all soils. Soil P fractionation demonstrated that, as Mehlich-3 STP generally increased above 450 mg P kg (from high to very high), the easily soluble and loosely bound P fractions decreased by 3 to 10%. Water-insoluble complexes of P bound to Al and Ca were the main drivers in the reduction of DRP in runoff, accounting for up to 43 and 38% of total P, respectively. Basing runoff DRP concentration projections solely on Mehlich-3 STP may overestimate runoff P losses from soils receiving long-term PL applications due to dissolution of water-insoluble Ca-P compounds.

Effects of pasture renovation on hydrology, nutrient runoff, and forage yield

Proper pasture management is important in promoting optimal forage growth and reducing runoff and nutrient loss. Pasture renovation is a management tool that improves aeration by mechanically creating holes or pockets within the soil. Pasture renovation was performed before manure application (poultry litter or swine slurry) on different pasture soils and rainfall simulations were conducted to identify the effects of pasture renovation on nutrient runoff and forage growth. Renovation of small plots resulted in significant and beneficial hydrological changes. During the first rainfall simulation, runoff volumes were 45 to 74% lower for seven out of eight renovated treatments, and infiltration rates increased by 3 to 87% for all renovated treatments as compared with nonrenovated treatments. Renovation of pasture soils fertilized with poultry litter led to significant reductions in dissolved reactive P (DRP) (74-87%), total P (TP) (76-85%), and total nitrogen (TN) (72-80%) loads in two of the three soils studied during the first rainfall simulation. Renovation did not result in any significant differences in forage yields. Overall, beneficial impacts of renovation lasted up to 3 mo, the most critical period for nutrient runoff following manure application. Therefore, renovation could be an important best management practice in these areas.

Effect of chemical and microbial amendment on phosphorus runoff from composted poultry litter

Environmental impacts of composting poultry litter with chemical amendments at the field scale have not been well quantified. The objectives of this study were to measure (i) P runoff and (ii) forage yield and N uptake from small plots fertilized with composted and fresh poultry litter. Two composting studies, aerated using mechanical turning, were conducted in consecutive years. Composted litter was collected at the completion of each study for use in runoff studies. Treatments in runoff studies included an unfertilized control, fresh (uncomposted) poultry litter, and litter composted with no amendment, H3PO4, alum, or a microbial mixture. An additional treatment, litter composted with alum plus the microbial mixture, was evaluated during the first year. Fertilizer treatments were applied at rates equivalent to 8.96 Mg ha(-1) and rainfall simulators were used to produce a 5 cm h(-1) storm event. Composted poultry litter, regardless of treatment, had higher total P concentrations than fresh poultry litter. Composting poultry litter resulted in reductions of N/P ratios by as much as 51%. Soluble reactive P concentrations were lowest in alum-treated compost, which reduced soluble P concentrations in runoff water by as much as 84%. Forage yields and N uptake were greatest from plots fertilized with fresh poultry litter. Composting poultry litter without the addition of C sources can increase P concentrations in the end product and surface runoff. This study also indicated that increased rates of composted poultry litter would be required to meet equivalent N rates supplied by fresh poultry litter.

Development of a phosphorus index for pastures fertilized with poultry litter--factors affecting phosphorus runoff

Currently, several state and federal agencies are proposing upper limits on soil test phosphorus (P), above which animal manures cannot be applied, based on the assumption that high P concentrations in runoff are due to high soil test P. Recent studies show that other factors are more indicative of P concentrations in runoff from areas where manure is being applied. The original P index was developed as an alternative P management tool incorporating factors affecting both the source and transport of P. The objective of this research was to evaluate the effects of multiple variables on P concentrations in runoff water and to construct a P source component of a P index for pastures that incorporates these effects. The evaluated variables were: (i) soil test P, (ii) soluble P in poultry litter, (iii) P in poultry diets, (iv) fertilizer type, and (v) poultry litter application rate. Field studies with simulated rainfall showed that P runoff was affected by the amount of soluble P applied in the fertilizer source. Before manure applications, soil test P was directly related to soluble P concentrations in runoff water. However, soil test P had little effect on P runoff after animal manure was applied. Unlike most other P indices, weighting factors of the P source components in the P index for pastures are based on results from runoff studies conducted under various management scenarios. As a result, weighting factors for the P source potential variables are well justified. A modification of the P index using scientific data should strengthen the ability of the P index concept to evaluate locations and management alternatives for P losses.

Evaluation of the phosphorus source component in the phosphorus index for pastures

A phosphorus (P) index for pastures was developed to write nutrient management plans that determine how much P can be applied to a given field. The objectives of this study were to (i) evaluate and compare the P index for pastures, particularly the P source component, and an environmental threshold soil test P level by conducting rainfall simulations on contrasting soils under various management scenarios; and (ii) evaluate the P index for pastures on field-scale watersheds. Poultry litter was applied to 12 small plots on each of six farms based on either an environmental threshold soil test P level or on the P index for pastures, and P runoff was evaluated using rainfall simulators. The P index was also evaluated from two small (0.405 ha) watersheds that had been fertilized annually with poultry litter since 1995. Results from the small plot study showed that soil test P alone was a poor predictor of P concentrations in runoff water following poultry litter applications. The relationship between P in runoff and the amount of soluble P applied was highly significant. Furthermore, P concentrations in runoff from plots with and without litter applications were significantly correlated to P index values. Studies on pastures receiving natural rainfall and annual poultry litter applications indicated that the P index for pastures predicted P loss accurately without calibration (y = 1.16x - 0.23, r(2) = 0.83). These data indicate that the P index for pastures can accurately assess the risk of P loss from fields receiving poultry litter applications in Arkansas and provide a more realistic risk assessment than threshold soil test P levels.

Effect of chemical and microbial amendments on ammonia volatilization from composting poultry litter

Research has shown that aluminum sulfate (alum) and phosphoric acid greatly reduce ammonia (NH3) volatilization from poultry litter; however, no studies have yet reported the effects of these amendments on field-scale composting of poultry litter. The objectives of this study were to (i) evaluate NH3 volatilization from composting litter by measuring both NH3 volatilization and changes in total nitrogen (N) in the litter and (ii) evaluate potential methods of reducing NH3 losses from composting poultry litter. Poultry litter was composted for 68 d the first year and 92 d the second year. Eleven treatments were screened in Year 1, which included an unamended control, a microbial mixture, a microbial mixture with 5% alum incorporated into the litter, 5 and 10% alum rates either surface-applied or incorporated, and 1 and 2% phosphoric acid rates either surface-applied or incorporated. Treatments in Year 2 included an unamended control, a microbial mixture, alum (7% by fresh wt.), and phosphoric acid (1.5% by fresh wt.). Alum and phosphoric acid reduced NH3 volatilization from composting poultry litter by as much as 76 and 54%, respectively. The highest NH3 emission rates were from microbial treatments each year. Compost treated with chemical amendments retained more initial N than all other treatments. Due to the cost and N loss associated with composting poultry litter, composting is not economical from an agronomic perspective compared with the use of fresh poultry litter.