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Proper JL, Chu H, Prajapati P, Sonksen MD, Murray TA. Network meta analysis to predict the efficacy of an approved treatment in a new indication. Res Synth Methods 2024; 15:242-256. [PMID: 38044545 DOI: 10.1002/jrsm.1683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 08/10/2023] [Accepted: 10/09/2023] [Indexed: 12/05/2023]
Abstract
Drug repurposing refers to the process of discovering new therapeutic uses for existing medicines. Compared to traditional drug discovery, drug repurposing is attractive for its speed, cost, and reduced risk of failure. However, existing approaches for drug repurposing involve complex, computationally-intensive analytical methods that are not widely used in practice. Instead, repurposing decisions are often based on subjective judgments from limited empirical evidence. In this article, we develop a novel Bayesian network meta-analysis (NMA) framework that can predict the efficacy of an approved treatment in a new indication and thereby identify candidate treatments for repurposing. We obtain predictions using two main steps: first, we use standard NMA modeling to estimate average relative effects from a network comprised of treatments studied in both indications in addition to one treatment studied in only one indication. Then, we model the correlation between relative effects using various strategies that differ in how they model treatments across indications and within the same drug class. We evaluate the predictive performance of each model using a simulation study and find that the model minimizing root mean squared error of the posterior median for the candidate treatment depends on the amount of available data, the level of correlation between indications, and whether treatment effects differ, on average, by drug class. We conclude by discussing an illustrative example in psoriasis and psoriatic arthritis and find that the candidate treatment has a high probability of success in a future trial.
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Affiliation(s)
- Jennifer L Proper
- Division of Biostatistics, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA
| | - Haitao Chu
- Statistical Research and Data Science Center, Pfizer Inc, New York, New York, USA
| | - Purvi Prajapati
- Statistical Innovation Center, Eli Lilly and Company, Indianapolis, Indiana, USA
| | - Michael D Sonksen
- Statistical Innovation Center, Eli Lilly and Company, Indianapolis, Indiana, USA
| | - Thomas A Murray
- Division of Biostatistics, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA
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Prajapati P, Wu X, Bajaj S, Gandhi D, Wintermark M, Malhotra A. Trends of Diversity in Neuroradiology Trainees in United States 2015-2022. AJNR Am J Neuroradiol 2023; 44:1009-1011. [PMID: 37500285 PMCID: PMC10494957 DOI: 10.3174/ajnr.a7947] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 06/22/2023] [Indexed: 07/29/2023]
Abstract
Radiology has historically not been a very diverse field. Many steps have been taken in the past decade to increase diversity in the field and make it more inclusive. This study shows the relative trends specifically in neuroradiology trainees, and the need for reassessment and further steps to increase diversity.
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Affiliation(s)
- P Prajapati
- From the Department of Radiology and Biomedical Imaging (P.P., S.B., A.M.), Yale School of Medicine, New Haven, Connecticut
| | - X Wu
- Department of Radiology (X.W.), University of California at San Francisco, San Francisco, California
| | - S Bajaj
- From the Department of Radiology and Biomedical Imaging (P.P., S.B., A.M.), Yale School of Medicine, New Haven, Connecticut
| | - D Gandhi
- University of Maryland School of Medicine (D.G.), Baltimore, Maryland
| | - M Wintermark
- Department of Neuroradiology (M.W.), MD Anderson Cancer Center, Houston, Texas
| | - A Malhotra
- From the Department of Radiology and Biomedical Imaging (P.P., S.B., A.M.), Yale School of Medicine, New Haven, Connecticut
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Gravlee E, Prajapati P, Yang Y, Bentley J, Ramachandran S. Development and testing of the barriers to opioid access scale among individuals with chronic pain in the United States. Res Social Adm Pharm 2023. [DOI: 10.1016/j.sapharm.2022.07.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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Rizkalla JM, Nimmons SJB, Helal A, Prajapati P, Jones AL. Relation of mobilization after hip fractures on day of surgery to length of stay. Proc AMIA Symp 2022; 35:305-308. [DOI: 10.1080/08998280.2022.2029730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Affiliation(s)
- James M. Rizkalla
- Department of Orthopedics, Baylor University Medical Center, Dallas, Texas
- Coptic Medical Association of North America (CMANA), Research Institute, Dallas, Texas
| | | | - Asad Helal
- Department of Orthopedics, Baylor University Medical Center, Dallas, Texas
| | - Purvi Prajapati
- Department of Orthopedics, Baylor University Medical Center, Dallas, Texas
| | - Alan L. Jones
- Department of Orthopedics, Baylor University Medical Center, Dallas, Texas
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Prajapati P, Thakkar A. Extreme multi-label learning : A large scale classification approach in machine learning. Journal of Information and Optimization Sciences 2019. [DOI: 10.1080/02522667.2019.1598000] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Purvi Prajapati
- Department of Information Technology, Chandubhai S Patel Institute of Technology, Charotar University of Science & Technology, CHARUSAT Campus, Changa 388421, Gujarat, India
| | - Amit Thakkar
- Department of Information Technology, Chandubhai S Patel Institute of Technology, Charotar University of Science & Technology, CHARUSAT Campus, Changa 388421, Gujarat, India
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Brewer J, Prajapati P, Peters WR, Wells K. Overuse of Computed Tomography in Emergency Department in the Evaluation of Benign Perianal Abscesses: Choosing Wisely? J Am Coll Surg 2018. [DOI: 10.1016/j.jamcollsurg.2018.07.147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Abstract
OBJECTIVE To determine if a self-report measure of S4-5 motor and sensory function in patients with chronic SCI accurately predicts sacral examination results. DESIGN Prospective, single-blinded self-report survey compared with sacral exam. SETTING Outpatient SCI clinic. PARTICIPANTS 116 patients aged 18+ with chronic SCI > 6 months who have undergone sacral exam. INTERVENTIONS The survey included demographic/clinical and sacral function information such as light tough (LT), pinprick sensation (PP), deep anal pressure (DAP) and voluntary anal contraction (VAC). Survey results and sacral exam were compared and stratified by the patient's American Spinal Cord Injury Association Impairment Scale (AIS) category. OUTCOME MEASURES Sacral self-report survey, AIS examination. RESULTS Mean age was 41.3 ± 14.4 years with majority male (69%) and Caucasian (71.6%). Overall, Positive Predictive Value (PPV) ranged between 48% (VAC) to 73% (DAP) and Negative Predictive Value (NPV) between 92% (VAC) to 100% (LT). AIS-A had NPV of 100% across all categories, and AIS-D had PPV of 100% across all categories. CONCLUSION Patient report of sacral sparing can predict negative sensation in patients with AIS-A and predict positive sensation in persons with AIS-D. Overall, the self-report of sacral sparing of motor and sensory function is not predictive enough to rely on for accurate classification.
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Affiliation(s)
- Rita Hamilton
- Baylor Institute for Rehabilitation, Dallas, Texas, USA,Baylor University Medical Center, Dallas, Texas, USA,Correspondence to: Rita Hamilton, 909 North Washington Avenue, Dallas, TX75246, USA; Ph: 214-820-9593.
| | - Steven Kirshblum
- Kessler Institute for Rehabilitation, West Orange, New Jersey, USA,Rutgers New Jersey Medical School, Newark, New Jersey, USA
| | - Seema Sikka
- Baylor Institute for Rehabilitation, Dallas, Texas, USA,Baylor University Medical Center, Dallas, Texas, USA
| | - Librada Callender
- Baylor Institute for Rehabilitation, Dallas, Texas, USA,Baylor University Medical Center, Dallas, Texas, USA
| | - Monica Bennett
- Baylor Institute for Rehabilitation, Dallas, Texas, USA,Center for Clinical Effectiveness, Baylor Scott and White Health, Dallas, Texas, USA
| | - Purvi Prajapati
- Center for Clinical Effectiveness, Baylor Scott and White Health, Dallas, Texas, USA
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Dahdah MN, Bennett M, Prajapati P, Parsons TD, Sullivan E, Driver S. Application of virtual environments in a multi-disciplinary day neurorehabilitation program to improve executive functioning using the Stroop task. NeuroRehabilitation 2018; 41:721-734. [PMID: 29254114 DOI: 10.3233/nre-172183] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND Virtual reality (VR) technology has demonstrated usefulness in diagnosis, education, and training. Studies supporting use of VR as a therapeutic treatment in medical rehabilitation settings remain limited. This study examines the use of VR in a treatment capacity, and whether it can be effectively integrated into neurorehabilitation. OBJECTIVE To determine whether immersive VR treatment interventions improve executive dysfunction in patients with brain injury and whether performance is stronger on a VR version of the Stroop than traditional Stroop formats. METHODS 15 patients with brain injury admitted to day neurorehabilitation. OUTCOME MEASURES reaction time, inhibition, and accuracy indices on VR Stroop; Automated Neuropsychological Assessment Metrics (ANAM) Stroop, Delis-Kaplan Executive Function System Stroop, Golden Stroop, and Woodcock-Johnson, 3rd Edition (WJ-III): Pair Cancellation. RESULTS Participants demonstrated significantly reduced response time on the word-reading condition of VR Stroop and non-significantly reduced response time on the interference condition. Non-significant improvements in accuracy and inhibition were demonstrated on the color-naming condition of VR Stroop. Significantly improved accuracy under time pressure was found for the ANAM, after VR intervention. CONCLUSION Implementation of immersive VR interventions during neurorehabilitation is effective in improving specific executive functions and information processing speed in brain-injured patients during the subacute period.
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Affiliation(s)
- Marie N Dahdah
- Baylor Institute for Rehabilitation, Dallas, TX, USA.,North Texas Traumatic Brain Injury Model System, Dallas, TX, USA.,Baylor Scott & White Medical Center - Plano, Plano, TX, USA
| | - Monica Bennett
- Center for Clinical Effectiveness, Baylor Scott and White Health, Dallas, TX, USA
| | - Purvi Prajapati
- Center for Clinical Effectiveness, Baylor Scott and White Health, Dallas, TX, USA
| | - Thomas D Parsons
- Department of Psychology, Computational Neuropsychology and Simulation (CNS) Lab, University of North Texas, Denton, TX, USA
| | - Erin Sullivan
- Department of Psychology, University of North Texas, Denton, TX, USA
| | - Simon Driver
- Baylor Institute for Rehabilitation, Dallas, TX, USA.,North Texas Traumatic Brain Injury Model System, Dallas, TX, USA
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Gonzalez-Hernandez J, Prajapati P, Ogola G, Nguyen V, Channabasappa N, Piper HG. A comparison of lipid minimization strategies in children with intestinal failure. J Pediatr Surg 2017; 53:S0022-3468(17)30652-8. [PMID: 29079315 DOI: 10.1016/j.jpedsurg.2017.10.030] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Accepted: 10/05/2017] [Indexed: 01/04/2023]
Abstract
PURPOSE The purpose of this study was to compare outcomes of lipid minimization with either Intralipid (IL) or Omegaven® in children with intestinal failure (IF) who developed intestinal failure-associated liver disease (IFALD) while receiving parenteral nutrition (PN). METHODS A retrospective review of children with IF requiring PN who developed IFALD (direct bilirubin >2 mg/dL) while receiving IL (2009-2016) was performed. Clinical characteristics, nutritional, and laboratory values were compared between children treated with reduced IL or Omegaven®. RESULTS 16 children were reviewed (8 treated with IL and 8 treated with Omegaven® at a median dose of 1g/kg/d). Both groups had similar demographics, small bowel length, and parenteral nutritional intake during the study (82.9±27.1 kcal/kg/d vs. 75.9±16.5 kcal/kg/d, p=0.54). The mean direct bilirubin (DBili) prior to initiating treatment was 7.8±4.3 mg/dL and 7.5±3.5 mg/dL (p=0.87) in the IL and Omegaven® groups, respectively. The IL group took a median of 113 days to achieve a DBili <0.5 mg/dL compared to 124 days in the Omegaven® group (p=0.49). There were no differences in markers of liver function or growth trajectories among groups. CONCLUSIONS Lipid minimization with either IL or Omegaven® has similar success in achieving a normal DBili in children with IF and IFALD without major differences in nutritional status or growth. TYPE OF STUDY Treatment Study LEVEL OF EVIDENCE: III.
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Affiliation(s)
| | - Purvi Prajapati
- Office of the Chief Quality Officer, Baylor Scott and White Health, Dallas, TX
| | - Gerald Ogola
- Office of the Chief Quality Officer, Baylor Scott and White Health, Dallas, TX
| | - Van Nguyen
- Division of Pediatric Gastroenterology, University of Texas Southwestern/Children's Health, Dallas, TX
| | - Nandini Channabasappa
- Division of Pediatric Gastroenterology, University of Texas Southwestern/Children's Health, Dallas, TX
| | - Hannah G Piper
- Division of Pediatric Surgery, University of Texas Southwestern/Children's Health, Dallas, TX.
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Shutze W, Shutze Jr WP, Prajapati P, Ogola G, Schauer J, Biller E, Douville N, Shutze RA. Postoperative continuous catheter-infused local anesthetic reduces pain scores and narcotic use after lower extremity revascularization. Vascular 2017; 26:262-270. [DOI: 10.1177/1708538117728864] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Objective Postoperative pain following lower extremity revascularization procedures is traditionally controlled with narcotic administration. However, this may not adequately control the pain and puts the patient at risk for complications from opiate use. Here we report an alternative strategy for pain management using a continuous catheter-infused local anesthetic into the operative limb. Design Retrospective case–control study. Methods Patients undergoing lower extremity revascularization procedures using continuous catheter-infused local anesthetic were compared to similar patients undergoing similar procedures during the same time period who did not receive continuous catheter-infused local anesthetic. Records were reviewed for pain scores, narcotics consumption, length of stay, need for postoperative chest X-ray, supplemental oxygen use, wound complications, and 30-day readmission. Results There were 153 patients (mean age 69.5 years) from September 2011 to December 2014 who underwent common femoral artery procedures, femoral-popliteal bypass, femoral-tibial bypass, popliteal aneurysm repair, popliteal to pedal bypass, popliteal artery thrombo-embolectomy, sapheno-popliteal venous bypass, or ilio-femoral bypass. There were no significant differences between the continuous catheter-infused local anesthetic ( n=57) and control ( n=96) groups regarding age, body mass index, cardiac history, diabetes, hypertension, and procedures performed. The continuous catheter-infused local anesthetic group showed better cumulative average pain scores, better high pain scores on postoperative days 1–3, and better average pain scores on postoperative days 2–3 ( P<0.03). The continuous catheter-infused local anesthetic group had lower median narcotics consumption on postoperative days 1–2 ( P=0.02). No differences were found in postoperative length of stay, urinary catheter use, number of postoperative chest X-rays, oxygen use, mobilization, or fever. Wound complications occurred in 8.8% of the continuous catheter-infused local anesthetic group and in 11.5% of controls (P=0.79). Readmission rates were 23% (continuous catheter-infused local anesthetic) and 21% (controls; P=0.84). Conclusion Postoperative continuous catheter-infused local anesthetic reduces pain scores and pain medication use compared to standard opiate therapy in these patients, without increasing wound complication or readmission rates. Continuous catheter-infused local anesthetic appeared to have no effect on the incidence of pulmonary complications, mobilization, or fever.
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Affiliation(s)
- William Shutze
- Baylor Scott & White Health, Dallas, USA
- Texas Vascular Associates, Dallas, USA
- The Heart Hospital Baylor Plano, Plano, USA
| | | | - Purvi Prajapati
- Office of the Chief Quality Officer, Baylor Scott & White Health, Dallas, USA
| | - Gerald Ogola
- Office of the Chief Quality Officer, Baylor Scott & White Health, Dallas, USA
| | - Jordan Schauer
- Texas A&M Health Science Center—College of Medicine, Bryan, USA
| | - Emily Biller
- Texas A&M Health Science Center—College of Medicine, Bryan, USA
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Sullivan E, Shelley J, Rainey E, Bennett M, Prajapati P, Powers MB, Foreman M, Warren AM. The association between posttraumatic stress symptoms, depression, and length of hospital stay following traumatic injury. Gen Hosp Psychiatry 2017. [PMID: 28622816 DOI: 10.1016/j.genhosppsych.2017.03.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
OBJECTIVE The present study examined the relationship between posttraumatic stress symptoms (PTSS) and depression symptoms with hospital outcome measures to explore how psychiatric factors relate to hospital length of stay (LOS). METHOD Participants were adults admitted to a large Level I Trauma Center for longer than 24h. Depression was assessed at hospitalization using the Patient Health Questionnaire (PHQ-8), and PTSS was measured by the Primary Care PTSD Screen (PC-PTSD). Hospital outcome information was collected from the hospital's trauma registry. Pearson correlations were performed. RESULTS 460 participants (mean age=44years, SD=16.8; 65.4% male) completed the study. Baseline PTSS and depression were significantly correlated with longer hospital LOS while controlling for demographics and injury severity (p=0.026; p=0.023). Both PTSS-positive and depression-positive groups had an average increased hospital LOS of two days. CONCLUSIONS A significant proportion of individuals who are admitted to the hospital following trauma may be at risk for depression and PTSS, which may then increase hospital LOS. As national attention turns to reducing healthcare costs, early screenings and interventions may aid in minimizing psychiatric symptoms in trauma patients, in turn reducing the cost and outcomes associated with total hospital LOS.
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Affiliation(s)
- Erin Sullivan
- University of North Texas, 1155 Union Circle, Denton, TX 76203, United States.
| | - Jordin Shelley
- Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, United States.
| | - Evan Rainey
- Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, United States.
| | - Monica Bennett
- Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, United States.
| | - Purvi Prajapati
- Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, United States.
| | - Mark B Powers
- Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, United States.
| | - Michael Foreman
- Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, United States.
| | - Ann Marie Warren
- Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, United States.
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Hernandez JG, Parker L, Le LD, Prajapati P, Ogola G, Burkart RD. Surgical Training in Robotic Surgery: Surgical Experience of Robotic-Assisted Transabdominal Preperitoneal Inguinal Herniorrhaphy with and without Resident Participation. J Am Coll Surg 2016. [DOI: 10.1016/j.jamcollsurg.2016.08.288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Patel A, Prajapati P, Sethuraman R, Patel JR. Essix restoration: a novel approach for transitional teeth replacement. Case Reports 2014; 2014:bcr-2013-200422. [DOI: 10.1136/bcr-2013-200422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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Pachore N, Patel JR, Sethuraman R, Prajapati P. Prosthesis on prosthesis: three-fourth metal crowns--a novel approach for metallic occlusion. Case Reports 2013; 2013:bcr-2013-200576. [DOI: 10.1136/bcr-2013-200576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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Naveen Y, Jagadeesh M, Prajapati P, Mallikarjuna R. Complete denture with pharyngeal bulb prosthesis. Case Reports 2013; 2013:bcr-2013-008892. [DOI: 10.1136/bcr-2013-008892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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Kalsariya B, Prajapati P, Vaishnav P, Singh L, Gupta S, Patgiri B. P01.11. Amalaki Rasayana, an Ayurvedic preparation: to evaluate its effect against experimental gastric ulcers in albino rats. BMC Complement Altern Med 2012. [PMCID: PMC3373511 DOI: 10.1186/1472-6882-12-s1-p11] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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