Plasma Extracellular Vesicle LncRNA H19 as a Potential Diagnostic Biomarker for Inflammatory Bowel Diseases

BACKGROUND

Inflammatory bowel disease (IBD) is a complex gastrointestinal disease with 2 main subtypes of Crohn's disease (CD) and ulcerative colitis (UC), whose diagnosis mainly depends on the medical history, clinical symptoms, endoscopic, histologic, radiological, and serological findings. Extracellular vesicles (EVs) are now considered an additional mechanism for intercellular communication, allowing cells to exchange biomolecules. Long noncoding RNAs (lncRNAs) that are enriched in EVs have been defined as an ideal diagnostic biomarker for diseases. In this study, we investigated the expression differences of 5 lncRNAs in tissue and plasma EVs of active IBD patients compared with patients in the remission phase and healthy controls to introduce an EV-lncRNA as a noninvasive IBD diagnostic biomarker.

METHODS

Twenty-two active IBD patients, 14 patients in the remission phase, 10 active rheumatoid arthritis (RA) patients, 14 irritable bowel syndrome (IBS) patients, and 22 healthy individuals were recruited in the discovery cohort. In addition, 16 patients with active IBD, 16 healthy controls, 10 inactive IBD patients, 12 active RA patients, and 14 IBS patients were also included in the validation cohort. The expression levels of 5 lncRNAs in tissue and EV-plasma were evaluated by quantitative real-time polymerase chain reaction (qRT-PCR) . Machine learning and receiver operating characteristic (ROC) curve analysis were performed to investigate the distinguishing ability of the candidate biomarkers.

RESULTS

While the expression levels of lncRNAs CDKN2B-AS1, GAS5, and TUG1 were significantly downregulated, lncRNAs H19 and CRNDE were overexpressed in active IBD lesions. Expression of H19 was detected in plasma EVs whose isolation had been confirmed via dynamic light scattering, microscopy images, and western blotting. The classification results demonstrated the excellent ability of H19 in distinguishing IBD/active from IBD/remission, healthy control, RA, and IBS (area under the ROC curve = 0.95, 0.97,1, and 0.97 respectively).

CONCLUSIONS

Our study suggests that circulating EV-lncRNA H19 exhibited promising potential for the diagnosis of active IBD.

Y chromosome is moving out of sex determination shadow

Although sex hormones play a key role in sex differences in susceptibility, severity, outcomes, and response to therapy of different diseases, sex chromosomes are also increasingly recognized as an important factor. Studies demonstrated that the Y chromosome is not a ‘genetic wasteland’ and can be a useful genetic marker for interpreting various male-specific physiological and pathophysiological characteristics. Y chromosome harbors male‑specific genes, which either solely or in cooperation with their X-counterpart, and independent or in conjunction with sex hormones have a considerable impact on basic physiology and disease mechanisms in most or all tissues development. Furthermore, loss of Y chromosome and/or aberrant expression of Y chromosome genes cause sex differences in disease mechanisms. With the launch of the human proteome project (HPP), the association of Y chromosome proteins with pathological conditions has been increasingly explored. In this review, the involvement of Y chromosome genes in male-specific diseases such as prostate cancer and the cases that are more prevalent in men, such as cardiovascular disease, neurological disease, and cancers, has been highlighted. Understanding the molecular mechanisms underlying Y chromosome-related diseases can have a significant impact on the prevention, diagnosis, and treatment of diseases.

KIF3B gene silent variant leading to sperm morphology and motility defects and male infertility

Sperm structural and functional defects are leading causes of male infertility. Patients with immotile sperm disorders suffer from axoneme failure and show a significant reduction in sperm count. The kinesin family member 3B (KIF3B) is one of the genes involved in the proper formation of sperm with a critical role in intraflagellar and intramanchette transport. A part of exon 2 and exons 3–5 of the KIF3B encodes a protein coiled-coil domain that interacts with IFT20 from the IFT protein complex. In the present study, the coding region of KIF3B coiled-coil domain was assessed in 88 oligoasthenoteratozoospermic patients, and the protein expression was evaluated in the mature spermatozoa of the case and control groups using immunocytochemistry and western blotting. According to the results, there was no genetic variation in the exons 3–5 of the KIF3B, but a new A > T variant was identified within the exon 2 in 30 patients, where nothing was detected in the control group. In contrast to healthy individuals, significantly reduced protein expression was observable in oligoasthenoteratozoospermic (OAT) patients carrying variation where protein organization was disarranged, especially in the principal piece and midpiece of the sperm tail. Besides, the protein expression level was lower in the patients’ samples compared to that of the control group. According to the results of the present study the NM_004798.3:c.1032A > T, p.Pro344 = variant; which has been recently submitted to the Clinvar database; although synonymous, causes alterations in the transcription factor binding site, exon skipping, and also exonic splicing enhancer-binding site. Therefore, KIF3B can play an important role in spermatogenesis and the related protein reduction can cause male infertility.

Emerging Role of Extracellular Vesicles in Biomarking the Gastrointestinal Diseases

INTRODUCTION

Extracellular vesicles (EVs) play an important role in cell-cell communication and regulation of various cellular functions under physiological and pathophysiological conditions through transferring their cargo to recipient cells. Molecular constituents of EVs are a fingerprinting profile of secreting cells which can be used as promising prognostic, diagnostic, and drug-response biomarkers in clinical settings.

AREAS COVERED

The present study provides a brief introduction about the biology of EVs and reviews methodologies used for EV isolation and characterization as well as high-throughput strategies to analyze EV contents. Furthermore, this review highlights the importance and unique role of EVs in the development and progression of gastrointestinal (GI) diseases, especially GI cancers, and then discusses their potential use, particularly those isolated from body fluids, in diagnosis and prognosis of GI diseases.

EXPERT OPINION

In-depth analysis of EV content can lead to the identification of new potential biomarkers for early diagnosis and prognosis prediction of GI diseases. The use of a more targeted approach by establishing more reproducible and standardized methods to decrease variations and obtain desired EV population as well as revisiting large pools of identified biomarkers and their evaluation in larger patient cohorts can result in the introduction of more reliable biomarkers in clinic.

Efficient Conversion of Thiols to S-Nitrosothiols with the 18-Crown-6 Complex of N2O4 as a New Nitrosating Agent

Gaseous N2O4 reacts with 18-crown-6 to afford a stable ionic complex of NO+·18-crown-6·H(NO3)2-; this complex is an efficient nitrosating agent for the conversion of thiols to their corresponding S-nitrosothiols in different organic solvents.

MicroRNA-203 reinforces stemness properties in melanoma and augments tumorigenesis in vivo

One of the challenges encountered in microRNA (miRNA) studies is to observe their dual role in different conditions and cells. This leads to a tougher prediction of their behavior as gene expression regulators. miR-203 has been identified to play a negative role in the progression of malignant melanoma; however, it has been reported, with dual effect, as both an oncomiR and tumor suppressor miRNA in some malignancies, such as breast cancer, meanwhile, the role of miR-203 in melanoma stem cells or even metastatic cells is unclear. In the present study, after observation of upregulation of miR-203 in melanoma patient's serum and also melanospheres as cancer stem cells model, we examined its overexpression on the stemness potential and migration ability of melanoma cells. Our data demonstrated that the increased miR-203 level was significantly associated with significant increase in the ability of proliferation, colony and spheres formation, migration, and tumorigenesis in A375 and NA8 cells. All of these changes were associated with enhancement of BRAF, several epithelial to mesenchymal transition factors, and stemness genes. In conclusion, our results clearly determined that miR-203 could be down-regulateddownregulated in melanoma tissues but be overexpressed in melanoma stem cells. It has an important role as oncomiR and promote repopulation, tumorigenicity, self-renewal, and migration. Therefore, we suggested overexpression of miR-203 as biomarker for early detection of metastasis. However, more studies are needed to validate our data.

Contribution of NOTCH signaling pathway along with TNF-α in the intestinal inflammation of ulcerative colitis

AIM

The aim of this study was to determine gene expression levels of TNF-α, NOTCH1, and HES1 in patients with UC.

BACKGROUND

Intestinal inflammation and epithelial injury are the leading actors of inflammatory bowel disease (IBD), causing an excessive expression of pro-inflammatory cytokines such as TNF-α. Also, target genes of NOTCH signaling are involved in the regulation of intestinal homeostasis. Previous studies have demonstrated that TNF-α increases in ulcerative colitis (UC) patients, but the relationship between TNF-α and NOTCH signaling pathway in UC etiopathology needs further study.

METHODS

Twelve active UC patients and twelve healthy controls were enrolled in this study. RNA was extracted and the mRNA expression levels of TNF-α, NOTCH1, and HES1 were examined using real-time PCR analyses. Further, transcriptome data deposited in Gene Expression Omnibus (GEO) database were analyzed to detect the differential expression of TNF superfamily and NOTCH1 gene in IBD patients. Finally, the interaction of TNF-α and NOTCH signaling was obtained from The SIGnaling Network Open Resource 2.0 (SIGNOR 2.0) database.

RESULTS

The transcription levels of TNF-α, NOTCH1, and HES1 genes were significantly elevated in UC patients compared with control (p < 0.05). In addition, GEO results confirmed our expression results. SIGNOR analysis showed that TNF-α interacts with NOTCH signaling components.

CONCLUSION

Based on our data, we observed that NOTCH1 and HES1 in co-operation of TNF-α, may play an important role in pathogenesis of UC. The members of NOTCH signaling pathway can be ideal candidates to target the therapy of IBD.

Soil decontamination of 2,4,6- trinitrotoluene by alfalfa (Medicago sativa)

Present study investigate the toxicity effect of 2,4,6-trinitrotoluene (TNT) on a terrestrial plant, alfalfa (Medicago sativa) in artificial soils. In this study, TNT toxicity assessment was performed on spiked silica with this nitroaromatic compound by determination of the percent of emergence and shoots and roots biomasses at the concentration range of 3.2-10000 mg kg(-1) Dry Weight (DW). The emergence was reduced by 22-32% after 5 days of exposure at TNT concentrations up to 100 mg kg(-1) DW; shoot and root biomasses were reduced by 48-50 and 63-74%, respectively after 30 days exposure at TNT concentrations < or = 32 mg kg(-1) DW. Concentrations higher than 100 mg kg(-1) DW can not be tolerated at all. Concentrations of TNT and its metabolites in silica, root and shoot were measured by High-Performance Liquid Chromatography (HPLC). Analyses of TNT spiked soil extracts reveal hat during alfalfa cultivation for 30 days, TNT was partially transformed at the extent of 15-27%. This transformation decreased at higher TNT soil concentrations. TNT is taken up and metabolized by plants to its downstream derivatives.

Growth and inorganic solute accumulation of two barley varieties in salinity

Salinity (NaCl stress) was applied with 50, 100, 200, 300 and 400 mM NaCl. The shoot and root length, fresh and dry weight, sodium and potassium content of two barley varieties (Hordeum vulgare L. var. Afzal and var. EMB82-12) were determined in various concentrations of NaCl. Root and shoot length, fresh and dry weight were decreased in two barley varieties in response to increased salt concentration, but the decrease was more significant in the root. Sodium content was increased and potassium content was decreased in two barley varieties in response to different salt regimes, but in general, these changes were more significant in the root.

Effect of salinity on organic solutes contents in barley

Salinity (NaCl stress) was applied with 50, 100, 200, 300 and 400 mM NaCl. The shoot and root water content and organic solutes contents of two barley varieties (Hordeum vulgare L. var. Afzal and var. EMB82-12) were determined in various concentrations of NaCl. Soluble sugar and proline contents were increased in two barley varieties in response to increased salt concentration, but this increase in Afzal var. were higher than EMB82-12. Soluble protein content was decreased in two barley varieties in response to different salt regimes and this decrease in Afzal var. was lower than EMB82-12 var. RWC decreased with increasing NaCl concentrations. Decrease of water content in EMB82-12 plants was higher than Afzal plants.

Effects of salinity on photosynthetic pigments, respiration, and water content in two barley varieties

Salinity (NaCl Stress) was applied with 50, 100, 200, 300 and 400 mM NaCl. The shoot and root respiration of two barley cultivars (Hordeum vulgare L. variety Afzal and variety EMB82-12) were determined in various concentrations ofNaCl. Chlorophyll a, b and total chlorophyll content were significantly decreased, but carotenoids content increased under salinity. Decrease of chlorophyll content in EMB82-12 was higher than Afzal, but carotenoids content in Afzal variety was higher than EMB82-12. Relative Water Content (RWC) was used to indicate the degree of stress. Oxygen uptake declined in shoot and root with increasing NaCl concentrations. Decrease of oxygen uptake in shoot and root of EMB82-12 variety was higher than Afzal variety. RWC decreased with increasing NaCl concentrations. Lowering of RWC reduced growth and increased shoot/root ratio. Decrease of water content in EMB82-12 plants was higher than Afzal plants. Shoot/root ratio in EMB82-12 variety was higher than Afzal.

Antioxidant responses of two barley varieties to saline stress

In this study, we investigated antioxidant responses of activities of Superoxide Dismutase (SOD), Catalase (CAT), Ascorbate Peroxidase (APX) and Guaiacol Peroxidase (GPX) to saline stress in two barley varieties named Hordeum vulgare L. var. Afzal and var. EMB82-12 treated with 50, 100, 200, 300 and 400 mM NaCl for 3 days. The MDA content of Afzal plants grown under different salt regimes remained nearly constant but it largely increased in EMB82-12 plants under the same conditions. There was a linear and significant correlation in CAT, APX, SOD, GPX activities in Afzal plants in response to increased salt concentration. The strong and positive correlation between antioxidant enzymes and salt concentrations, may account for the MDA level of Afzal plants remaining constant in response to different salt regimes. In general, the activities of antioxidant enzymes were increased in the root and shoot under saline stress. But the increase was more significant and consistent in the root. Among the antioxidant enzymes, CAT activity was increased the most drastically.

Heart Rate Variability: Does it Change After RF Ablation of Reentrant Supraventricular Tachycardia?

BACKGROUND

Following RF ablation of reentrant supraventricular tachycardia, inappropriate sinus tachycardia may occur. Local parasympathetic denervation is a possible mechanism for these rhythm disturbances. The purpose of this study was to determine the incidence of sinus tachycardia and to determine the relation between endocardial lesions at different ablation sites and alterations in autonomic tone in several different groups of patients with supraventricular tachycardia, using techniques of heart rate variability analysis.

METHODS

The subjects of this study were 75 patients (48 women, 27 men) with a mean age of 39.99 (SD = 13.39). They underwent RF ablation of AV nodal slow pathways (40 cases), posteroseptal APs (23 cases), left lateral and right free wall APs (12 cases) because of symptomatic tachycardias. The mean sinus rate and time domain (standard deviation of RR intervals and root mean square of differences of adjacent RR intervals) and frequency domain (low frequency, high frequency and low frequency/high frequency ratio) analyses of heart rate variability were obtained by use of 24 hour Holter monitoring before and 1 month after ablation compared with pre-ablation values.

RESULTS

Analysis of 24 hour ambulatory Holter-monitors, performed 1 month after RF ablation, showed no significant changes in time and frequency domain parameters of heart rate variability in different groups. A significant increase in mean heart rate was noted after RF ablation at AV nodal slow pathway group and left freewall/right free wall accessory pathways group. Patients undergoing RF ablation of right or left posteroseptal accessory pathways had no significant increase in the mean heart rate.

CONCLUSION

In summary, an increase in sinus tachycardia may be initiated by RF ablation of atrioventricular reentrant tachycardia (AVNRT) and right free wall or left free wall accessory pathways. This finding shows that the modifications of heart rate are not directly related to the posteroseptal region or to the accessory pathways.