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Bell KL, Turo KJ, Lowe A, Nota K, Keller A, Encinas‐Viso F, Parducci L, Richardson RT, Leggett RM, Brosi BJ, Burgess KS, Suyama Y, de Vere N. Plants, pollinators and their interactions under global ecological change: The role of pollen DNA metabarcoding. Mol Ecol 2023; 32:6345-6362. [PMID: 36086900 PMCID: PMC10947134 DOI: 10.1111/mec.16689] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 08/18/2022] [Accepted: 08/30/2022] [Indexed: 11/28/2022]
Abstract
Anthropogenic activities are triggering global changes in the environment, causing entire communities of plants, pollinators and their interactions to restructure, and ultimately leading to species declines. To understand the mechanisms behind community shifts and declines, as well as monitoring and managing impacts, a global effort must be made to characterize plant-pollinator communities in detail, across different habitat types, latitudes, elevations, and levels and types of disturbances. Generating data of this scale will only be feasible with rapid, high-throughput methods. Pollen DNA metabarcoding provides advantages in throughput, efficiency and taxonomic resolution over traditional methods, such as microscopic pollen identification and visual observation of plant-pollinator interactions. This makes it ideal for understanding complex ecological networks and their responses to change. Pollen DNA metabarcoding is currently being applied to assess plant-pollinator interactions, survey ecosystem change and model the spatiotemporal distribution of allergenic pollen. Where samples are available from past collections, pollen DNA metabarcoding has been used to compare contemporary and past ecosystems. New avenues of research are possible with the expansion of pollen DNA metabarcoding to intraspecific identification, analysis of DNA in ancient pollen samples, and increased use of museum and herbarium specimens. Ongoing developments in sequencing technologies can accelerate progress towards these goals. Global ecological change is happening rapidly, and we anticipate that high-throughput methods such as pollen DNA metabarcoding are critical for understanding the evolutionary and ecological processes that support biodiversity, and predicting and responding to the impacts of change.
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Affiliation(s)
- Karen L. Bell
- CSIRO Health & Biosecurity and CSIRO Land & WaterFloreatWAAustralia
- School of Biological SciencesUniversity of Western AustraliaCrawleyWAAustralia
| | - Katherine J. Turo
- Department of Ecology, Evolution, and Natural ResourcesRutgers UniversityNew BrunswickNew JerseyUSA
| | | | - Kevin Nota
- Department of Ecology and GeneticsEvolutionary Biology Centre, Uppsala UniversityUppsalaSweden
| | - Alexander Keller
- Organismic and Cellular Networks, Faculty of BiologyBiocenter, Ludwig‐Maximilians‐Universität MünchenPlaneggGermany
| | - Francisco Encinas‐Viso
- Centre for Australian National Biodiversity ResearchCSIROBlack MountainAustralian Capital TerritoryAustralia
| | - Laura Parducci
- Department of Ecology and GeneticsEvolutionary Biology Centre, Uppsala UniversityUppsalaSweden
- Department of Environmental BiologySapienza University of RomeRomeItaly
| | - Rodney T. Richardson
- Appalachian LaboratoryUniversity of Maryland Center for Environmental ScienceFrostburgMarylandUSA
| | | | - Berry J. Brosi
- Department of BiologyUniversity of WashingtonSeattleWashingtonUSA
| | - Kevin S. Burgess
- Department of BiologyCollege of Letters and Sciences, Columbus State University, University System of GeorgiaAtlantaGeorgiaUSA
| | - Yoshihisa Suyama
- Field Science CenterGraduate School of Agricultural Science, Tohoku UniversityOsakiMiyagiJapan
| | - Natasha de Vere
- Natural History Museum of DenmarkUniversity of CopenhagenCopenhagenDenmark
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2
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Wizenberg SB, Newburn LR, Pepinelli M, Conflitti IM, Richardson RT, Hoover SER, Currie RW, Giovenazzo P, Zayed A. Validating a multi-locus metabarcoding approach for characterizing mixed-pollen samples. Plant Methods 2023; 19:120. [PMID: 37925401 PMCID: PMC10625703 DOI: 10.1186/s13007-023-01097-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 10/21/2023] [Indexed: 11/06/2023]
Abstract
BACKGROUND The mutualistic interaction between entomophilous plants and pollinators is fundamental to the structure of most terrestrial ecosystems. The sensitive nature of this relationship has been disrupted by anthropogenic modifications to natural landscapes, warranting development of new methods for exploring this trophic interaction. Characterizing the composition of pollen collected by pollinators, e.g. Apis mellifera, is a common means of exploring this relationship, but traditional methods of microscopic pollen assessment are laborious and limited in their scope. The development of pollen metabarcoding as a method of rapidly characterizing the abundance and diversity of pollen within mixed samples presents a new frontier for this type of work, but metabarcoding may have limitations, and validation is warranted before any suite of primers can be confidently used in a research program. We set out to evaluate the utility of an integrative approach, using a set of established primers (ITS2 and rbcL) versus melissopalynological analysis for characterizing 27 mixed-pollen samples from agricultural sites across Canada. RESULTS Both individual markers performed well relative to melissopalynology at the family level with decreases in the strength of correlation and linear model fits at the genus level. Integrating data from both markers together via a multi-locus approach provided the best rank-based correlation between metagenetic and melissopalynological data at both the genus (ρ = 0.659; p < 0.001) and family level (ρ = 0.830; p < 0.001). Species accumulation curves indicated that, after controlling for sampling effort, melissopalynological characterization provides similar or higher species richness estimates than either marker. The higher number of plant species discovered via the metabarcoding approach simply reflects the vastly greater sampling effort in comparison to melissopalynology. CONCLUSIONS Pollen metabarcoding performed well at characterizing the composition of mixed pollen samples relative to a traditional melissopalynological approach. Limitations to the quantitative application of this method can be addressed by adopting a multi-locus approach that integrates information from multiple markers.
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Affiliation(s)
- Sydney B Wizenberg
- Department of Biology, York University, 4700 Keele St., Toronto, ON, M3J 1P3, Canada
| | - Laura R Newburn
- Department of Biology, York University, 4700 Keele St., Toronto, ON, M3J 1P3, Canada
| | - Mateus Pepinelli
- Department of Biology, York University, 4700 Keele St., Toronto, ON, M3J 1P3, Canada
| | - Ida M Conflitti
- Department of Biology, York University, 4700 Keele St., Toronto, ON, M3J 1P3, Canada
| | - Rodney T Richardson
- Appalachian Laboratory, University of Maryland Center for Environmental Science, Frostburg, MD, 21613, USA
| | - Shelley E R Hoover
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive W, Lethbridge, AB, T1K3M4, Canada
| | - Robert W Currie
- Department of Entomology, University of Manitoba, 12 Dafoe Road, Winnipeg, MB, R3T2N2, Canada
| | - Pierre Giovenazzo
- Département de Biologie, Université Laval, 2325 Rue de l'Université, Québec City, Québec, G1V0A6, Canada
| | - Amro Zayed
- Department of Biology, York University, 4700 Keele St., Toronto, ON, M3J 1P3, Canada.
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3
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Wizenberg SB, Newburn LR, Richardson RT, Pepinelli M, Conflitti IM, Moubony M, Borges D, Guarna MM, Guzman‐Novoa E, Foster LJ, Zayed A. Environmental metagenetics unveil novel plant-pollinator interactions. Ecol Evol 2023; 13:e10645. [PMID: 37941738 PMCID: PMC10630067 DOI: 10.1002/ece3.10645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Revised: 10/05/2023] [Accepted: 10/09/2023] [Indexed: 11/10/2023] Open
Abstract
Honey bees are efficient pollinators of flowering plants, aiding in the plant reproductive cycle and acting as vehicles for evolutionary processes. Their role as agents of selection and drivers of gene flow is instrumental to the structure of plant populations, but historically, our understanding of their influence has been limited to predominantly insect-dispersed flowering species. Recent metagenetic work has provided evidence that honey bees also forage on pollen from anemophilous species, suggesting that their role as vectors for transmission of plant genetic material is not confined to groups designated as entomophilous, and leading us to ask: could honey bees act as dispersal agents for non-flowering plant taxa? Using an extensive pollen metabarcoding dataset from Canada, we discovered that honey bees may serve as dispersal agents for an array of sporophytes (Anchistea, Claytosmunda, Dryopteris, Osmunda, Osmundastrum, Equisetum) and bryophytes (Funaria, Orthotrichum, Sphagnum, Ulota). Our findings also suggest that honey bees may occasionally act as vectors for the dispersal of aquatic phototrophs, specifically Coccomyxa and Protosiphon, species of green algae. Our work has shed light on the broad resource-access patterns that guide plant-pollinator interactions and suggests that bees could act as vectors of gene flow, and potentially even agents of selection, across Plantae.
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Affiliation(s)
| | | | - Rodney T. Richardson
- Appalachian LaboratoryUniversity of Maryland Center for Environmental ScienceFrostburgMarylandUSA
| | | | | | | | - Daniel Borges
- Ontario Beekeepers' AssociationTech‐Transfer Program, Orchard Park Office CentreGuelphOntarioCanada
| | - M. Marta Guarna
- Beaverlodge Research Farm, Agriculture and Agri‐Food CanadaBeaverlodgeAlbertaCanada
| | | | - Leonard J. Foster
- Department of Biochemistry & Molecular Biology and Michael Smith LaboratoriesVancouverBritish ColumbiaCanada
| | - Amro Zayed
- Department of BiologyYork UniversityTorontoOntarioCanada
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4
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Crone MK, Boyle NK, Bresnahan ST, Biddinger DJ, Richardson RT, Grozinger CM. More than mesolectic: Characterizing the nutritional niche of Osmia cornifrons. Ecol Evol 2023; 13:e10640. [PMID: 37869440 PMCID: PMC10589078 DOI: 10.1002/ece3.10640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 09/18/2023] [Accepted: 10/09/2023] [Indexed: 10/24/2023] Open
Abstract
Characterizing the nutritional needs of wild bee species is an essential step to better understanding bee biology and providing suitable supplemental forage for at-risk species. Here, we aim to characterize the nutritional needs of a model solitary bee species, Osmia cornifrons (Radoszkowski), by using dietary protein-to-lipid ratio (P:L ratio) as a proxy for nutritional niche and niche breadth. We first identified the mean target P:L ratio (~3.02:1) and P:L collection range (0.75-6.26:1) from pollen provisions collected across a variety of sites and time points. We then investigated the P:L tolerance range of larvae by rearing bees in vitro on a variety of diets. Multifloral and single-source pollen diets with P:L ratios within the range of surveyed provisions did not always support larval development, indicating that other dietary components such as plant secondary compounds and micronutrients must also be considered in bee nutritional experiments. Finally, we used pollen metabarcoding to identify pollen from whole larval provisions to understand how much pollen bees used from plants outside of their host plant families to meet their nutritional needs, as well as pollen from individual forager bouts, to observe if bees maintained strict floral constancy or visited multiple plant genera per foraging bout. Whole larval provision surveys revealed a surprising range of host plant pollen use, ranging from ~5% to 70% of host plant pollen per provision. Samples from individual foraging trips contained pollen from multiple genera, suggesting that bees are using some form of foraging decision making. Overall, these results suggest that O. cornifrons have a wide nutritional niche breadth, but while pollen P:L ratio tolerance is broad, a tolerable P:L ratio alone is not enough to create a quality diet for O. cornifrons, and the plant species that make up these diets must also be carefully considered.
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Affiliation(s)
- Makaylee K. Crone
- Department of Entomology, Center for Pollinator Research, Huck Institutes of the Life SciencesPennsylvania State UniversityUniversity ParkPennsylvaniaUSA
- Intercollege Graduate Program in Ecology, Huck Institutes of the Life SciencesPennsylvania State UniversityUniversity ParkPennsylvaniaUSA
| | - Natalie K. Boyle
- Department of Entomology, Center for Pollinator Research, Huck Institutes of the Life SciencesPennsylvania State UniversityUniversity ParkPennsylvaniaUSA
| | - Sean T. Bresnahan
- Department of Entomology, Center for Pollinator Research, Huck Institutes of the Life SciencesPennsylvania State UniversityUniversity ParkPennsylvaniaUSA
- Intercollege Graduate Degree Program in Molecular, Cellular, and Integrative Biosciences, Huck Institutes of the Life SciencesPennsylvania State UniversityUniversity ParkPennsylvaniaUSA
| | - David J. Biddinger
- Department of Entomology, Center for Pollinator Research, Huck Institutes of the Life SciencesPennsylvania State UniversityUniversity ParkPennsylvaniaUSA
- Penn State Fruit Research and Extension CenterBiglervillePennsylvaniaUSA
| | | | - Christina M. Grozinger
- Department of Entomology, Center for Pollinator Research, Huck Institutes of the Life SciencesPennsylvania State UniversityUniversity ParkPennsylvaniaUSA
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5
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Lin CH, Suresh S, Matcham E, Monagan P, Curtis H, Richardson RT, Johnson RM. Soybean is a Common Nectar Source for Honey Bees (Hymenoptera: Apidae) in a Midwestern Agricultural Landscape. J Econ Entomol 2022; 115:1846-1851. [PMID: 36130184 DOI: 10.1093/jee/toac140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Indexed: 06/15/2023]
Abstract
Large-scale soybean [Glycine max (L.) Merr.] cultivation has substantially transformed the Midwestern landscape in recent decades. Floral nectar produced by immense fields of soybeans has the potential to influence foraging ecology and resource accumulation of honey bee (Apis mellifera L.) colonies. In this study, we combined microscopic and molecular pollen analysis of honey samples with waggle dance inference of spatial foraging patterns to demonstrate that honey bees routinely forage on soybeans in Ohio. In analyzing honey samples from across the state, we found ubiquitous presence of soybean pollen in honey collected from agricultural lands during soybean bloom. The abundance of soybean pollen in honey increased with the amount of soybean fields surrounding the apiaries. Honey bee waggle dances recorded during soybean bloom revealed that honey bees preferred soybean fields for foraging over other habitat types. With these results, future research efforts aimed at enhancing mutual interactions between soybeans and honey bees may represent an unexplored pathway for increasing soybean production while supporting honey bees and other pollinators in the surrounding landscape.
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Affiliation(s)
- Chia-Hua Lin
- Department of Entomology, The Ohio State University, Rothenbuhler Honey Bee Research Laboratory, 2501 Carmack Road, Columbus, OH 43210, USA
| | - Sreelakshmi Suresh
- Department of Entomology, The Ohio State University, Rothenbuhler Honey Bee Research Laboratory, 2501 Carmack Road, Columbus, OH 43210, USA
| | - Emma Matcham
- Department of Horticulture and Crop Science, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
- Department of Agronomy, University of Florida, Gainesville, FL 32605, USA
| | - Paityn Monagan
- Metro Early College High School, 1929 Kenny Road, Columbus, OH 43210, USA
| | - Hailey Curtis
- Department of Entomology, The Ohio State University, Rothenbuhler Honey Bee Research Laboratory, 2501 Carmack Road, Columbus, OH 43210, USA
| | - Rodney T Richardson
- Department of Entomology, The Ohio State University, Rothenbuhler Honey Bee Research Laboratory, 2501 Carmack Road, Columbus, OH 43210, USA
| | - Reed M Johnson
- Department of Entomology, Ohio Agricultural Research and Development Center, The Ohio State University, 1680 Madison Avenue, Wooster, OH 44691, USA
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6
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Richardson RT. Controlling critical mistag‐associated false discoveries in metagenetic data. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rodney T. Richardson
- Appalachian Laboratory University of Maryland Center for Environmental Science Frostburg MD USA
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7
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Lin C, Sponsler DB, Richardson RT, Watters HD, Glinski DA, Henderson WM, Minucci JM, Lee EH, Purucker ST, Johnson RM. Honey Bees and Neonicotinoid-Treated Corn Seed: Contamination, Exposure, and Effects. Environ Toxicol Chem 2021; 40:1212-1221. [PMID: 33289922 PMCID: PMC8048971 DOI: 10.1002/etc.4957] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 03/09/2020] [Accepted: 12/01/2020] [Indexed: 05/05/2023]
Abstract
Most corn (Zea mays) seeds planted in the United States in recent years are coated with a seed treatment containing neonicotinoid insecticides. Abrasion of the seed coating generates insecticide-laden planter dust that disperses through the landscape during corn planting and has resulted in many "bee-kill" incidents in North America and Europe. We investigated the linkage between corn planting and honey bee colony success in a region dominated by corn agriculture. Over 3 yr we consistently observed an increased presence of corn seed treatment insecticides in bee-collected pollen and elevated worker bee mortality during corn planting. Residues of seed treatment neonicotinoids, clothianidin and thiamethoxam, detected in pollen positively correlated with cornfield area surrounding the apiaries. Elevated worker mortality was also observed in experimental colonies fed field-collected pollen containing known concentrations of corn seed treatment insecticides. We monitored colony growth throughout the subsequent year in 2015 and found that colonies exposed to higher insecticide concentrations exhibited slower population growth during the month of corn planting but demonstrated more rapid growth in the month following, though this difference may be related to forage availability. Exposure to seed treatment neonicotinoids during corn planting has clear short-term detrimental effects on honey bee colonies and may affect the viability of beekeeping operations that are dependent on maximizing colony size in the springtime. Environ Toxicol Chem 2021;40:1212-1221. © 2020 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.
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Affiliation(s)
- Chia‐Hua Lin
- Department of Entomology, Ohio Agricultural Research and Development CenterThe Ohio State UniversityWoosterOhioUSA
| | - Douglas B. Sponsler
- Department of Entomology, Ohio Agricultural Research and Development CenterThe Ohio State UniversityWoosterOhioUSA
| | - Rodney T. Richardson
- Department of Entomology, Ohio Agricultural Research and Development CenterThe Ohio State UniversityWoosterOhioUSA
| | - Harold D. Watters
- Department of ExtensionThe Ohio State UniversityBellefontaineOhioUSA
| | | | - W. Matthew Henderson
- Center for Environmental Measurement and ModelingUS Environmental Protection AgencyAthensGeorgia
| | - Jeffrey M. Minucci
- Center for Computational Toxicity and ExposureUS Environmental Protection Agency, Research Triangle ParkNorth Carolina
| | - E. Henry Lee
- Center for Public Health and Environmental AssessmentUS Environmental Protection AgencyCorvallisOregon
| | - S. Thomas Purucker
- Center for Computational Toxicity and ExposureUS Environmental Protection Agency, Research Triangle ParkNorth Carolina
| | - Reed M. Johnson
- Department of Entomology, Ohio Agricultural Research and Development CenterThe Ohio State UniversityWoosterOhioUSA
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8
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Richardson RT, Eaton TD, Lin CH, Cherry G, Johnson RM, Sponsler DB. Application of plant metabarcoding to identify diverse honeybee pollen forage along an urban-agricultural gradient. Mol Ecol 2020; 30:310-323. [PMID: 33098151 DOI: 10.1111/mec.15704] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 10/08/2020] [Accepted: 10/09/2020] [Indexed: 01/10/2023]
Abstract
Understanding animal foraging ecology requires large sample sizes spanning broad environmental and temporal gradients. For pollinators, this has been hampered by the laborious nature of morphologically identifying pollen. Identifying pollen from urban environments is particularly difficult due to the presence of diverse ornamental species associated with consumer horticulture. Metagenetic pollen analysis represents a potential solution to this issue. Building upon prior laboratory and bioinformatic methods, we applied quantitative multilocus metabarcoding to characterize the foraging ecology of honeybee colonies situated in urban, suburban, mixed suburban-agricultural and rural agricultural sites in central Ohio, USA. In cross-validating a subset of our metabarcoding results using microscopic palynology, we find strong concordance between the molecular and microscopic methods. Our results suggest that forage from the agricultural site exhibited decreased taxonomic diversity and temporal turnover relative to the urban and suburban sites, though the generalization of this observation will require replication across additional sites and cities. Our work demonstrates the power of honeybees as environmental samplers of floral community composition at large spatial scales, aiding in the distinction of taxa characteristically associated with urban or agricultural land use from those distributed ubiquitously across the sampled landscapes. Observed patterns of high forage diversity and compositional turnover in our more urban sites are likely reflective of the fine-grain heterogeneity and high beta diversity of urban floral landscapes at the scale of honeybee foraging. This provides guidance for future studies investigating how relationships between urbanization and measures of pollinator health are mediated by variation in floral resource dynamics across landscapes.
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Affiliation(s)
- Rodney T Richardson
- Appalachian Laboratory, University of Maryland Center for Environmental Science, Frostburg, MD, USA
| | - Tyler D Eaton
- Department of Entomology, Ohio State University, Wooster, OH, USA
| | - Chia-Hua Lin
- Department of Entomology, Ohio State University, Wooster, OH, USA
| | - Garrett Cherry
- Department of Entomology, Ohio State University, Wooster, OH, USA
| | - Reed M Johnson
- Department of Entomology, Ohio State University, Wooster, OH, USA
| | - Douglas B Sponsler
- Department of Animal Ecology and Tropical Biology, University of Würzburg, Würzburg, Germany.,Department of Botany, The Academy of Natural Sciences of Drexel University, Philadelphia, PA, USA
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9
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Sponsler DB, Shump D, Richardson RT, Grozinger CM. Characterizing the floral resources of a North American metropolis using a honey bee foraging assay. Ecosphere 2020. [DOI: 10.1002/ecs2.3102] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- Douglas B. Sponsler
- Department of Entomology Huck Institutes of the Life Sciences Center for Pollinator Research Pennsylvania State University University Park Pennsylvania 16802 USA
| | - Don Shump
- Philadelphia Bee Company Philadelphia Pennsylvania 19125 USA
| | | | - Christina M. Grozinger
- Department of Entomology Huck Institutes of the Life Sciences Center for Pollinator Research Pennsylvania State University University Park Pennsylvania 16802 USA
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10
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Sponsler DB, Grozinger CM, Richardson RT, Nurse A, Brough D, Patch HM, Stoner KA. A screening-level assessment of the pollinator-attractiveness of ornamental nursery stock using a honey bee foraging assay. Sci Rep 2020; 10:831. [PMID: 31965017 PMCID: PMC6972849 DOI: 10.1038/s41598-020-57858-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Accepted: 01/06/2020] [Indexed: 11/18/2022] Open
Abstract
In urban and suburban landscapes characterized by extensive designed greenspaces, the support of pollinator communities hinges significantly on floral resources provided by ornamental plants. The attractiveness of ornamental plants to pollinators, however, cannot be presumed, and some studies suggest that a majority of ornamental plant varieties receive little or no pollinator visitation. Here, we harness the sampling power of the western honey bee, a generalist pollinator whose diet breadth overlaps substantially with that of other pollinators, to survey the utilization of ornamental plants grown at three commercial nurseries in Connecticut, USA. Using a combination of DNA metabarcoding and microscopy, we identify, to genus-level, pollen samples from honey bee colonies placed within each nursery, and we compare our results with nursery plant inventories to identify the subset of cultivated genera that were visited during pollen foraging. Samples were collected weekly from May to September, encompassing the majority of the growing season. Our findings show that some plant genera known to be cultivated as ornamentals in our system, particularly ornamental trees and shrubs (e.g. Hydrangea, Rosa, Spiraea, Syringa, Viburnum), functioned as major pollen sources, but the majority of plants inventoried at our nurseries provided little or no pollen to honey bees. These results are in agreement with a growing body of literature highlighting the special importance of woody plants as resources for flower-visiting insects. We encourage further exploration of the genera highlighted in our data as potential components of pollinator-friendly ornamental greenspace.
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Affiliation(s)
- Douglas B Sponsler
- Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, PA, 16802, USA.
| | - Christina M Grozinger
- Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, PA, 16802, USA
| | | | - Andrea Nurse
- Climate Change Institute, University of Maine, 206 Sawyer Research Center, Orono, Maine, 04469, USA
| | - Dalton Brough
- Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, PA, 16802, USA
| | - Harland M Patch
- Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, PA, 16802, USA
| | - Kimberly A Stoner
- The Connecticut Agricultural Experiment Station, 123 Huntington Street, New Haven, CT, 06511, USA
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11
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Richardson RT, Sponsler DB, McMinn‐Sauder H, Johnson RM. MetaCurator: A hidden Markov model‐based toolkit for extracting and curating sequences from taxonomically‐informative genetic markers. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13314] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Douglas B. Sponsler
- Department of Entomology Pennsylvania State University University Park PA USA
- Department of Botany The Academy of Natural Sciences of Drexel University Philadelphia PA USA
| | | | - Reed M. Johnson
- Department of Entomology The Ohio State University Columbus OH USA
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12
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Bengtsson-Palme J, Richardson RT, Meola M, Wurzbacher C, Tremblay ÉD, Thorell K, Kanger K, Eriksson KM, Bilodeau GJ, Johnson RM, Hartmann M, Nilsson RH. Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. Bioinformatics 2019; 34:4027-4033. [PMID: 29912385 PMCID: PMC6247927 DOI: 10.1093/bioinformatics/bty482] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2018] [Accepted: 06/12/2018] [Indexed: 11/25/2022] Open
Abstract
Motivation Correct taxonomic identification of DNA sequences is central to studies of biodiversity using both shotgun metagenomic and metabarcoding approaches. However, no genetic marker gives sufficient performance across all the biological kingdoms, hampering studies of taxonomic diversity in many groups of organisms. This has led to the adoption of a range of genetic markers for DNA metabarcoding. While many taxonomic classification software tools can be re-trained on these genetic markers, they are often designed with assumptions that impair their utility on genes other than the SSU and LSU rRNA. Here, we present an update to Metaxa2 that enables the use of any genetic marker for taxonomic classification of metagenome and amplicon sequence data. Results We evaluated the Metaxa2 Database Builder on 11 commonly used barcoding regions and found that while there are wide differences in performance between different genetic markers, our software performs satisfactorily provided that the input taxonomy and sequence data are of high quality. Availability and implementation Freely available on the web as part of the Metaxa2 package at http://microbiology.se/software/metaxa2/. Supplementary information Supplementary data are available at Bioinformatics online.
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Affiliation(s)
- Johan Bengtsson-Palme
- Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.,Department of Infectious Diseases, Institute of Biomedicine, The Sahlgrenska Academy, University of Gothenburg, Guldhedsgatan 10, SE-41346 Gothenburg, Sweden.,Centre for Antibiotic Resistance Research (CARe) at University of Gothenburg, SE-40530 Gothenburg, Sweden
| | - Rodney T Richardson
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, Wooster, OH, USA
| | - Marco Meola
- Fermentation Organisms, Methods Development and Analytics, Agroscope, CH-3003 Bern, Switzerland
| | - Christian Wurzbacher
- Department of Biological and Environmental Sciences, University of Gothenburg, SE-40530 Gothenburg, Sweden.,Chair of Urban Water Systems Engineering, Technical University of Munich, Garching, Germany
| | - Émilie D Tremblay
- Canadian Food Inspection Agency, Ottawa Laboratory Fallowfield, Ottawa, ON, Canada
| | - Kaisa Thorell
- Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden
| | - Kärt Kanger
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - K Martin Eriksson
- Department of Mechanics and Maritime Sciences, Chalmers University of Technology, Gothenburg, Sweden
| | - Guillaume J Bilodeau
- Canadian Food Inspection Agency, Ottawa Laboratory Fallowfield, Ottawa, ON, Canada
| | - Reed M Johnson
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, Wooster, OH, USA
| | - Martin Hartmann
- Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland.,Sustainable Agroecosystems, Department of Environmental Systems Science, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - R Henrik Nilsson
- Department of Biological and Environmental Sciences, University of Gothenburg, SE-40530 Gothenburg, Sweden.,Gothenburg Global Biodiversity Centre, SE-405 30 Göteborg, Sweden
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Richardson RT, Curtis HR, Matcham EG, Lin C, Suresh S, Sponsler DB, Hearon LE, Johnson RM. Quantitative multi‐locus metabarcoding and waggle dance interpretation reveal honey bee spring foraging patterns in Midwest agroecosystems. Mol Ecol 2019; 28:686-697. [DOI: 10.1111/mec.14975] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Revised: 11/09/2018] [Accepted: 11/19/2018] [Indexed: 12/17/2022]
Affiliation(s)
| | - Hailey R. Curtis
- College of Veterinary Medicine The Ohio State University Columbus Ohio
| | - Emma G. Matcham
- Department of Horticulture and Crop Science The Ohio State University Columbus Ohio
| | - Chia‐Hua Lin
- Department of Entomology The Ohio State University Columbus Ohio
| | - Sreelakshmi Suresh
- Department of Evolution, Ecology, and Organismal Biology The Ohio State University Columbus Ohio
| | - Douglas B. Sponsler
- Department of Entomology Pennsylvania State University University Park Pennsylvania
| | - Luke E. Hearon
- Department of Entomology The Ohio State University Columbus Ohio
| | - Reed M. Johnson
- Department of Entomology The Ohio State University Columbus Ohio
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Richardson RT, Bengtsson-Palme J, Gardiner MM, Johnson RM. A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data. PeerJ 2018; 6:e5126. [PMID: 29967752 PMCID: PMC6025149 DOI: 10.7717/peerj.5126] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 06/07/2018] [Indexed: 01/01/2023] Open
Abstract
Metabarcoding is a popular application which warrants continued methods optimization. To maximize barcoding inferences, hierarchy-based sequence classification methods are increasingly common. We present methods for the construction and curation of a database designed for hierarchical classification of a 157 bp barcoding region of the arthropod cytochrome c oxidase subunit I (COI) locus. We produced a comprehensive arthropod COI amplicon dataset including annotated arthropod COI sequences and COI sequences extracted from arthropod whole mitochondrion genomes, the latter of which provided the only source of representation for Zoraptera, Callipodida and Holothyrida. The database contains extracted sequences of the target amplicon from all major arthropod clades, including all insect orders, all arthropod classes and Onychophora, Tardigrada and Mollusca outgroups. During curation, we extracted the COI region of interest from approximately 81 percent of the input sequences, corresponding to 73 percent of the genus-level diversity found in the input data. Further, our analysis revealed a high degree of sequence redundancy within the NCBI nucleotide database, with a mean of approximately 11 sequence entries per species in the input data. The curated, low-redundancy database is included in the Metaxa2 sequence classification software (http://microbiology.se/software/metaxa2/). Using this database with the Metaxa2 classifier, we performed a cross-validation analysis to characterize the relationship between the Metaxa2 reliability score, an estimate of classification confidence, and classification error probability. We used this analysis to select a reliability score threshold which minimized error. We then estimated classification sensitivity, false discovery rate and overclassification, the propensity to classify sequences from taxa not represented in the reference database. Our work will help researchers design and evaluate classification databases and conduct metabarcoding on arthropods and alternate taxa.
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Affiliation(s)
- Rodney T Richardson
- Department of Entomology, Ohio State University, Columbus, OH, United States of America
| | - Johan Bengtsson-Palme
- Department of Infectious Diseases, Institute of Biomedicine, The Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.,Center for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden
| | - Mary M Gardiner
- Department of Entomology, Ohio State University, Columbus, OH, United States of America
| | - Reed M Johnson
- Department of Entomology, Ohio State University, Wooster, OH, United States of America
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15
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Richardson RT, Bengtsson-Palme J, Johnson RM. Evaluating and optimizing the performance of software commonly used for the taxonomic classification of DNA metabarcoding sequence data. Mol Ecol Resour 2016; 17:760-769. [PMID: 27797448 DOI: 10.1111/1755-0998.12628] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Revised: 10/17/2016] [Accepted: 10/21/2016] [Indexed: 11/29/2022]
Abstract
The taxonomic classification of DNA sequences has become a critical component of numerous ecological research applications; however, few studies have evaluated the strengths and weaknesses of commonly used sequence classification approaches. Further, the methods and software available for sequence classification are diverse, creating an environment in which it may be difficult to determine the best course of action and the trade-offs made using different classification approaches. Here, we provide an in silico evaluation of three DNA sequence classifiers, the rdp Naïve Bayesian Classifier, rtax and utax. Further, we discuss the results, merits and limitations of both the classifiers and our method of classifier evaluation. Our methods of comparison are simple, yet robust, and will provide researchers a methodological and conceptual foundation for making such evaluations in a variety of research situations. Generally, we found a considerable trade-off between accuracy and sensitivity for the classifiers tested, indicating a need for further improvement of sequence classification tools.
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Affiliation(s)
- Rodney T Richardson
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, OH, 44691, USA
| | - Johan Bengtsson-Palme
- Department of Infectious Diseases, The Sahlgrenska Academy, University of Gothenburg, Guldhedsgatan 10, Göteborg, SE-413 46, Sweden.,Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, PO Box 440, SE-405 30, Gothenburg, Sweden
| | - Reed M Johnson
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, OH, 44691, USA
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16
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Abstract
Identification of the species origin of pollen has many applications, including assessment of plant–pollinator networks, reconstruction of ancient plant communities, product authentication, allergen monitoring, and forensics. Such applications, however, have previously been limited by microscopy-based identification of pollen, which is slow, has low taxonomic resolution, and has few expert practitioners. One alternative is pollen DNA barcoding, which could overcome these issues. Recent studies demonstrate that both chloroplast and nuclear barcoding markers can be amplified from pollen. These recent validations of pollen metabarcoding indicate that now is the time for researchers in various fields to consider applying these methods to their research programs. In this paper, we review the nascent field of pollen DNA barcoding and discuss potential new applications of this technology, highlighting existing limitations and future research developments that will improve its utility in a wide range of applications.
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Affiliation(s)
- Karen L. Bell
- Emory University, School of Environmental Sciences, Atlanta, GA, USA
| | - Natasha de Vere
- National Botanic Garden of Wales, Llanarthne, United Kingdom
| | - Alexander Keller
- Department of Animal Ecology and Tropical Biology, University of Würzburg, Würzburg, Germany
| | | | - Annemarie Gous
- Biotechnology Platform, Agricultural Research Council, Pretoria, South Africa
- School of Life Science, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | | | - Berry J. Brosi
- Emory University, School of Environmental Sciences, Atlanta, GA, USA
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Richardson RT, Lin CH, Quijia JO, Riusech NS, Goodell K, Johnson RM. Rank-based characterization of pollen assemblages collected by honey bees using a multi-locus metabarcoding approach. Appl Plant Sci 2015; 3:apps1500043. [PMID: 26649264 PMCID: PMC4651628 DOI: 10.3732/apps.1500043] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2015] [Accepted: 09/13/2015] [Indexed: 05/03/2023]
Abstract
PREMISE OF THE STUDY Difficulties inherent in microscopic pollen identification have resulted in limited implementation for large-scale studies. Metabarcoding, a relatively novel approach, could make pollen analysis less onerous; however, improved understanding of the quantitative capacity of various plant metabarcode regions and primer sets is needed to ensure that such applications are accurate and precise. METHODS AND RESULTS We applied metabarcoding, targeting the ITS2, matK, and rbcL loci, to characterize six samples of pollen collected by honey bees, Apis mellifera. Additionally, samples were analyzed by light microscopy. We found significant rank-based associations between the relative abundance of pollen types within our samples as inferred by the two methods. CONCLUSIONS Our findings suggest metabarcoding data from plastid loci, as opposed to the ribosomal locus, are more reliable for quantitative characterization of pollen assemblages. Furthermore, multilocus metabarcoding of pollen may be more reliable than single-locus analyses, underscoring the need for discovering novel barcodes and barcode combinations optimized for molecular palynology.
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Affiliation(s)
- Rodney T. Richardson
- Department of Entomology, The Ohio State University—Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691 USA
- Author for correspondence:
| | - Chia-Hua Lin
- Department of Entomology, The Ohio State University—Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691 USA
| | - Juan O. Quijia
- Department of Entomology, The Ohio State University—Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691 USA
| | - Natalia S. Riusech
- Department of Entomology, The Ohio State University—Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691 USA
| | - Karen Goodell
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, 1179 University Drive, Newark, Ohio 43023 USA
| | - Reed M. Johnson
- Department of Entomology, The Ohio State University—Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691 USA
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18
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Richardson RT, Lin CH, Sponsler DB, Quijia JO, Goodell K, Johnson RM. Application of ITS2 metabarcoding to determine the provenance of pollen collected by honey bees in an agroecosystem. Appl Plant Sci 2015; 3:apps1400066. [PMID: 25606352 DOI: 10.5061/dryad.64b5p] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 12/04/2014] [Indexed: 05/24/2023]
Abstract
PREMISE OF THE STUDY Melissopalynology, the identification of bee-collected pollen, provides insight into the flowers exploited by foraging bees. Information provided by melissopalynology could guide floral enrichment efforts aimed at supporting pollinators, but it has rarely been used because traditional methods of pollen identification are laborious and require expert knowledge. We approach melissopalynology in a novel way, employing a molecular method to study the pollen foraging of honey bees (Apis mellifera) in a landscape dominated by field crops, and compare these results to those obtained by microscopic melissopalynology. • METHODS Pollen was collected from honey bee colonies in Madison County, Ohio, USA, during a two-week period in midspring and identified using microscopic methods and ITS2 metabarcoding. • RESULTS Metabarcoding identified 19 plant families and exhibited sensitivity for identifying the taxa present in large and diverse pollen samples relative to microscopy, which identified eight families. The bulk of pollen collected by honey bees was from trees (Sapindaceae, Oleaceae, and Rosaceae), although dandelion (Taraxacum officinale) and mustard (Brassicaceae) pollen were also abundant. • DISCUSSION For quantitative analysis of pollen, using both metabarcoding and microscopic identification is superior to either individual method. For qualitative analysis, ITS2 metabarcoding is superior, providing heightened sensitivity and genus-level resolution.
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Affiliation(s)
- Rodney T Richardson
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
| | - Chia-Hua Lin
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
| | - Douglas B Sponsler
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
| | - Juan O Quijia
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
| | - Karen Goodell
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, 1179 University Dr., Newark, Ohio 43023 USA
| | - Reed M Johnson
- Department of Entomology, The Ohio State University-Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
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19
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Richardson RT, Lin CH, Sponsler DB, Quijia JO, Goodell K, Johnson RM. Application of ITS2 metabarcoding to determine the provenance of pollen collected by honey bees in an agroecosystem. Appl Plant Sci 2015; 3:apps1400066. [PMID: 25606352 PMCID: PMC4298230 DOI: 10.3732/apps.1400066] [Citation(s) in RCA: 133] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 12/04/2014] [Indexed: 05/08/2023]
Abstract
PREMISE OF THE STUDY Melissopalynology, the identification of bee-collected pollen, provides insight into the flowers exploited by foraging bees. Information provided by melissopalynology could guide floral enrichment efforts aimed at supporting pollinators, but it has rarely been used because traditional methods of pollen identification are laborious and require expert knowledge. We approach melissopalynology in a novel way, employing a molecular method to study the pollen foraging of honey bees (Apis mellifera) in a landscape dominated by field crops, and compare these results to those obtained by microscopic melissopalynology. • METHODS Pollen was collected from honey bee colonies in Madison County, Ohio, USA, during a two-week period in midspring and identified using microscopic methods and ITS2 metabarcoding. • RESULTS Metabarcoding identified 19 plant families and exhibited sensitivity for identifying the taxa present in large and diverse pollen samples relative to microscopy, which identified eight families. The bulk of pollen collected by honey bees was from trees (Sapindaceae, Oleaceae, and Rosaceae), although dandelion (Taraxacum officinale) and mustard (Brassicaceae) pollen were also abundant. • DISCUSSION For quantitative analysis of pollen, using both metabarcoding and microscopic identification is superior to either individual method. For qualitative analysis, ITS2 metabarcoding is superior, providing heightened sensitivity and genus-level resolution.
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Affiliation(s)
- Rodney T. Richardson
- Department of Entomology, The Ohio State University–Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
| | - Chia-Hua Lin
- Department of Entomology, The Ohio State University–Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
- Author for correspondence:
| | - Douglas B. Sponsler
- Department of Entomology, The Ohio State University–Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
| | - Juan O. Quijia
- Department of Entomology, The Ohio State University–Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
| | - Karen Goodell
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, 1179 University Dr., Newark, Ohio 43023 USA
| | - Reed M. Johnson
- Department of Entomology, The Ohio State University–Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, Ohio 44691 USA
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20
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Collins AT, Richardson RT, Higginson JS. Interlimb symmetry of dynamic knee joint stiffness and co-contraction is maintained in early stage knee osteoarthritis. J Electromyogr Kinesiol 2014; 24:497-501. [PMID: 24768278 DOI: 10.1016/j.jelekin.2014.03.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2013] [Revised: 02/21/2014] [Accepted: 03/19/2014] [Indexed: 10/25/2022] Open
Abstract
Individuals with knee OA often exhibit greater co-contraction of antagonistic muscle groups surrounding the affected joint which may lead to increases in dynamic joint stiffness. These detrimental changes in the symptomatic limb may also exist in the contralateral limb, thus contributing to its risk of developing knee osteoarthritis. The purpose of this study is to investigate the interlimb symmetry of dynamic knee joint stiffness and muscular co-contraction in knee osteoarthritis. Muscular co-contraction and dynamic knee joint stiffness were assessed in 17 subjects with mild to moderate unilateral medial compartment knee osteoarthritis and 17 healthy control subjects while walking at a controlled speed (1.0m/s). Paired and independent t-tests determined whether significant differences exist between groups (p<0.05). There were no significant differences in dynamic joint stiffness or co-contraction between the OA symptomatic and OA contralateral group (p=0.247, p=0.874, respectively) or between the OA contralateral and healthy group (p=0.635, p=0.078, respectively). There was no significant difference in stiffness between the OA symptomatic and healthy group (p=0.600); however, there was a slight trend toward enhanced co-contraction in the symptomatic knees compared to the healthy group (p=0.051). Subjects with mild to moderate knee osteoarthritis maintain symmetric control strategies during gait.
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Affiliation(s)
- A T Collins
- Department of Mechanical Engineering, University of Delaware, Newark, DE, United States.
| | - R T Richardson
- Biomechanics and Movement Science Program, University of Delaware, Newark, DE, United States
| | - J S Higginson
- Department of Mechanical Engineering, University of Delaware, Newark, DE, United States; Biomechanics and Movement Science Program, University of Delaware, Newark, DE, United States
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21
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Delong MR, Georgopoulos AP, Crutcher MD, Mitchell SJ, Richardson RT, Alexander GE. Functional organization of the basal ganglia: contributions of single-cell recording studies. Ciba Found Symp 2008; 107:64-82. [PMID: 6389041 DOI: 10.1002/9780470720882.ch5] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Studies of single-cell discharge in the basal ganglia of behaving primates have revealed: characteristic patterns of spontaneous discharge in the striatum, external (GPe) and internal (GPi) globus pallidus, pars reticulata and pars compacta of the substantia nigra, and the subthalamic nucleus (STN); phasic changes in neural discharge in relation to movements of specific body parts (e.g. leg, arm, neck, face); short-latency (sensory) neural responses to passive joint rotation; a somatotopic organization of movement-related neurons in GPe, GPi, and STN; a clustering of functionally similar neurons in the putamen and globus pallidus; greater representation of the proximal than of the distal portion of the limb; changes in neural activity in reaction-time tasks, suggesting a greater role of the basal ganglia in the execution than in the initiation of movement in this paradigm; a clear relation of neuronal activity to direction, amplitude (?velocity) of movement, and force; a preferential relation of neural activity to the direction of movement, rather than to the pattern of muscular activity. Some of these findings suggest that the basal ganglia may play a role in the control of movement parameters rather than (or independent of) the pattern of muscular activity. Loss of basal ganglia output related to amplitude may account for the bradykinesia in Parkinson's disease. The presence of somatotopic organization in the putamen and globus pallidus, together with known topographic striopallidal connections, suggests that segregated, parallel cortico-subcortical loops subserve 'motor' and 'complex' functions.
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Wang Z, Widgren EE, Richardson RT, Orand MG. Eppin: a molecular strategy for male contraception. Soc Reprod Fertil Suppl 2007; 65:535-42. [PMID: 17644992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
New male contraceptives, both hormonal and non-hormonal, have many obstacles to overcome before they reach the market as a product. For hormonal contraceptives the long-term efficacy of oligospermia in a large population of unselected men remains to be determined. For nonhormonal contraception target selection remains a primary goal. Immunocontraception, which showed great promise for many years, has recently lost its appeal. Nevertheless, immunocontraception can be utilised as a strategy, particularly in primates, to discern the function of target molecules in the male. As an example, we discuss Eppin, an epididymal protease inhibitor that coats the surface of human spermatozoa. Because Eppin is predicted to be a serine protease inhibitor with chymotrypsin-like specificity and binds semenogelin, the natural substrate of PSA (prostate specific antigen, a serine protease), we investigated whether Eppin would modulate PSA activity and the hydrolysis of semenogelin. Additionally, because antibodies to Eppin provide contraception in male monkeys, we investigated whether antibodies to Eppin would inhibit the PSA hydrolysis of semenogelin. Eppin is a specific inhibitor of PSA activity that requires leucine 87, Eppin's P1 reactive site. Although Eppin modulates the hydrolysis of semenogelin by PSA, antibodies to Eppin do not inhibit PSA activity.
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Affiliation(s)
- Zengjun Wang
- Department of Cell & Developmental Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA
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23
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O'Rand MG, Widgren EE, Wang Z, Richardson RT. Eppin: an epididymal protease inhibitor and a target for male contraception. Soc Reprod Fertil Suppl 2007; 63:445-53. [PMID: 17566290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Eppin (epididymal protease inhibitor) is one of several serine protease (or serine protease-like) inhibitors that are encoded by genes on human chromosome 20 and on mouse chromosome 2. Here we review our current knowledge of human and mouse Eppin genes and the Eppin protein in the context of protease inhibitors. Antibodies to Eppin in immunized male monkeys provide an effective and reversible contraceptive and these antibodies may be effective by interfering with Eppin's interaction with semenogelin during ejaculation. We review Eppin-semenogelin interaction and present a working model in the context of the hydrolysis of semenogelin by prostate specific antigen.
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Affiliation(s)
- M G O'Rand
- Department of Cell & Developmental Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina-27599, USA.
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Abstract
Eppin (epididymal protease inhibitor) is a member of the whey acidic protein (WAP)-type four-disulfide core (WFDC) gene family. This study provides updated information on Eppin and the Eppin-like genes within the Eppin cluster on human chromosome 20. A virtual structural model of the Eppin protein demonstrates that the C-terminal half of Eppin is structurally homologous to the Kunitz-type trypsin inhibitor. The Eppin N-terminal may have structural similarities to defensin-type molecules, rather than to that of the WAP consensus sequence. Human spermatozoa have a receptor for Eppin. When recombinant semenogelin (Sg) is digested with PSA many low molecular weight fragments are produced. However, when Eppin is bound to Sg, digestion by PSA is modulated. Addition of antibodies to the C-terminal of Eppin resulted in blocking PSA activity modulation. We can hypothesize from our analysis of anti-Eppin epitopes on Eppin that when anti-Eppin antibodies are bound to Eppin on the sperm surface they block the binding site for semenogelin.
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Affiliation(s)
- M G O'Rand
- Department of Cell and Developmental Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
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25
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O'rand MG, Widgren EE, Sivashanmugam P, Richardson RT, Hall SH, French FS, VandeVoort CA, Ramachandra SG, Ramesh V, Jagannadha Rao A. Reversible immunocontraception in male monkeys immunized with eppin. Science 2004; 306:1189-90. [PMID: 15539605 DOI: 10.1126/science.1099743] [Citation(s) in RCA: 124] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Various forms of birth control have been developed for women; however, there are currently few options for men. The development of male contraceptives that are effective, safe, and reversible is desired for family planning throughout the world. We now report contraception of male nonhuman primates (Macaca radiata) immunized with Eppin, a testis/epididymis-specific protein. Seven out of nine males (78%) developed high titers to Eppin, and all of these high-titer monkeys were infertile. Five out of seven (71%) high-anti-Eppin titer males recovered fertility when immunization was stopped. This study demonstrates that effective and reversible male immunocontraception is an attainable goal. This method of immunocontraception may be extended to humans.
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Affiliation(s)
- M G O'rand
- Laboratories for Reproductive Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
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Abstract
Eppin (SPINLW1; GeneID, 57119) is a single-copy gene encoding a cysteine-rich protein found only in the testis and epididymis, which contains both Kunitz-type and WAP-type four disulfide core protease inhibitor consensus sequences. This study demonstrates that, in seminal plasma and on human spermatozoa following ejaculation, Eppin is bound to semenogelin I (Sg). Six different experimental approaches: 1) immunoprecipitation from spermatozoa and seminal plasma with anti-Eppin, 2) colocalization in semen and spermatozoa, 3) incubation of recombinant Eppin (rEppin) and rSg and immunoprecipitation with either anti-Eppin or anti-Sg, 4) far-Western blotting of Eppin and Sg, 5) Saturation binding of 125I-Sg to Eppin, which is competed by unlabeled Sg, and 6) direct binding of 125I-Sg to Eppin on a blot, all demonstrate that Eppin and Sg bind to each other. To study the specificity of binding, recombinant fragments of Eppin and Sg were made and demonstrate that the Eppin(75-133) C-terminal fragment binds the Sg(164-283) fragment containing the only cysteine in human Sg I (Cys-239). Reduction and carboxymethylation of Cys239 blocks binding of 125I-rEppin, indicating that a disulfide bond may be necessary for Eppin binding. The physiological significance of the Eppin-semenogelin complex bound on the surface of ejaculate spermatozoa lies in its ability to provide antimicrobial activity for spermatozoa, which has been reported for both Eppin and semenogelin-derived peptides, and in its ability to provide for the survival and preparation of spermatozoa for fertility in the female reproductive tract.
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Affiliation(s)
- Zengjun Wang
- Laboratories for Reproductive Biology and Department of Cell and Developmental Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA
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27
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Liu Q, Hamil KG, Sivashanmugam P, Grossman G, Soundararajan R, Rao AJ, Richardson RT, Zhang YL, O'Rand MG, Petrusz P, French FS, Hall SH. Primate epididymis-specific proteins: characterization of ESC42, a novel protein containing a trefoil-like motif in monkey and human. Endocrinology 2001; 142:4529-39. [PMID: 11564719 DOI: 10.1210/endo.142.10.8422] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Epididymal secreted proteins promote sperm maturation and fertilizing capacity by interacting with sperm during passage through the epididymis. Here we investigate the molecular basis of sperm maturation by isolating cDNA clones for novel epididymis-specific expressed sequences. Thirty-six novel cDNAs were isolated and sequenced from a subtracted Macaca mulatta epididymis library. The clones encode proteins with a range of motifs characteristic of protein-modifying enzymes, protease inhibitors, hydrophobic ligand-binding and transport proteins, extracellular matrix-interacting proteins, and transcription regulatory factors. The full length coding sequences were obtained for 11 clones representing a range of abundance levels. Expression of each is regionally localized and androgen regulated. The most abundant, ESC42, contains a cysteine-rich region similar to the signature binding domain of the trefoil family of motogenic wound repair proteins. The monkey and human proteins are nearly 90% identical. Immunohistochemical staining revealed that the protein is most abundant in the epithelium of the caput and is also present in the lumen and bound to sperm. The ESC42 gene, located on chromosome 20q11, contains two exons encoding two nearly identical predicted signal peptides and a third exon encoding the rest of the protein.
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Affiliation(s)
- Q Liu
- Departments of Pediatrics, University of North Carolina School of Medicine, Chapel Hill, North Carolina 27599, USA
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28
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Abstract
We previously cloned and sequenced cDNAs encoding mouse NASP (mNASP), a cell cycle regulated histone H1 binding protein. Here we report the genomic sequence and organization for mNASP along with its 5' regulatory region and compare these with human NASP (hNASP). The mNASP gene contains 16 exons interrupted by 15 introns. The sequence encoding testis mNASP uses all 16 exons while the somatic form uses 13 exons by differential splicing. All the exons conform to the AG/GT splicing rule. Putative TATA box-containing transcription initiation sites are present for somatic NASP in human and mouse and for testis hNASP. Comparison of the promoter regions of mNASP and hNASP approximately 1 kb upstream of the transcription start sites for the two splice variants revealed a number of possible transcription factor binding sites relevant to specific patterns of NASP tissue expression. The presence of single bands on Southern blots of mouse genomic DNA suggests that mNASP is a single copy gene although pseudogenes exist in both the mouse and human genomes. Chromosome fluorescence by in situ hybridization revealed that mNASP is present on chromosome 4, in an area that corresponds to band 4D1, a region syntenic to the locus of hNASP on chromosome 1. Additionally, we report that human somatic and testis NASP mRNAs are expressed at varying levels in all the transformed cell lines and human tumors tested, further supporting NASP's role in the cell cycle of dividing cells.
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MESH Headings
- Animals
- Autoantigens/genetics
- Base Sequence
- Blotting, Northern
- Blotting, Southern
- Carrier Proteins/genetics
- Cell Cycle Proteins
- Chromosomal Proteins, Non-Histone
- Chromosome Mapping
- Chromosomes, Human, Pair 1/genetics
- Chromosomes, Human, Pair 8/genetics
- DNA/chemistry
- DNA/genetics
- Exons
- Female
- Gene Dosage
- Gene Expression Regulation, Neoplastic
- Genes/genetics
- HL-60 Cells
- HeLa Cells
- Humans
- In Situ Hybridization, Fluorescence
- Introns
- K562 Cells
- Male
- Mice
- Mice, Inbred Strains
- Molecular Sequence Data
- Nuclear Proteins/genetics
- Promoter Regions, Genetic/genetics
- Pseudogenes/genetics
- RNA, Messenger/genetics
- RNA, Messenger/metabolism
- Sequence Alignment
- Sequence Analysis, DNA
- Sequence Homology, Nucleic Acid
- Tumor Cells, Cultured
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Affiliation(s)
- R T Richardson
- Department of Cell and Developmental Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599-7090, USA.
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29
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Abstract
Sp17 is a protein that was originally thought to be expressed exclusively in the testis and whose primary function was binding to the extracellular matrix of the oocyte. Several recent reports have implicated Sp17 as having a role in cell-cell adhesion and/or cell migration in transformed, lymphocytic and haematopoietic cells, possibly through its interaction with extracellular heparan sulphate. In the present study, we report that Sp17's central domain (amino acids 61-117), spanning exon 3, is critical for heparin binding. Sp17 has two additional functional domains, an N-terminal domain similar to the dimer-interaction site in the cAMP-dependent protein kinase IIalpha regulatory subunit and a C-terminal calmodulin-binding domain. The mouse gene for Sp17 is 6.5 kb and contains four exons. Although Sp17 expression is highest in the testis, it is present in all of the mouse somatic tissues examined and is highly conserved throughout all mammalian species. Sp17's central domain, which is necessary for heparin binding, exhibits the greatest sequence divergence of all three domains. The Sp17 gene is induced in metastatic cells and during mucosal immune responses, and the protein appears to play an important role in cell migration and/or adhesion in somatic cells, as well as in male germ cells.
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Affiliation(s)
- Y Wen
- Department of Cell Biology and Anatomy, CB#7090, 210 Taylor Hall, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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30
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Richardson RT, Sivashanmugam P, Hall SH, Hamil KG, Moore PA, Ruben SM, French FS, O'Rand M. Cloning and sequencing of human Eppin: a novel family of protease inhibitors expressed in the epididymis and testis. Gene 2001; 270:93-102. [PMID: 11404006 DOI: 10.1016/s0378-1119(01)00462-0] [Citation(s) in RCA: 89] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
In this report we describe the discovery of Eppin (Epididymal protease inhibitor), a gene on human chromosome 20 expressing three mRNAs encoding two isoforms of a cystine-rich protein containing both Kunitz-type and WAP-type four disuffide core protease inhibitor consensus sequences. Analysis of Eppin's genomic sequence from chromosome 20q12-13.2 predicts the existence of all three splice variants of Eppin and that all the exons conform to the AG/GT splicing rule. The presence of single bands on a Southern blot of human genomic DNA suggests that Eppin is a single copy gene. TATA box transcription initiation sites are present for both of the different Eppin 5' UTRs and examination of the promoter region 1800 bp upstream of the start codon revealed a number of putative transcription enhancer binding sites typical of genes expressed in the epididymis or testis. Northern blot and tissue specific PCR data indicate Eppin-1 is expressed only in the testis and epididymis; Eppin-2 is expressed only in the epididymis and Eppin-3 only in the testis. Antiserum prepared against recombinant EPPIN recognizes several strong bands on Western blots of human epididymal extracts from the caput and corpus regions. Immunohistochemistry indicates a strong pattern of expression by the ciliated cells of the efferent ducts and strong staining of ejaculated spermatozoa. Eppin represents the first member of a family of protease inhibitors characterized by dual inhibitor consensus sequences, both WAP-type and Kunitz-type consensus sequences. A second family member is predicted to exist on chromosome 20 approximately 4 kb downstream from Eppin's exon I, which has two WAP-type sequences and one Kumtz-type consensus sequence.
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MESH Headings
- Alternative Splicing
- Amino Acid Sequence
- Base Sequence
- Blotting, Northern
- Blotting, Southern
- Blotting, Western
- Cloning, Molecular
- DNA, Complementary/chemistry
- DNA, Complementary/genetics
- Epididymis/metabolism
- Exons
- Female
- Gene Expression
- Genes/genetics
- Humans
- Immunohistochemistry
- Introns
- Male
- Molecular Sequence Data
- Protease Inhibitors/metabolism
- Protein Isoforms/genetics
- Protein Isoforms/metabolism
- Proteinase Inhibitory Proteins, Secretory
- Proteins/genetics
- Proteins/metabolism
- RNA, Messenger/genetics
- RNA, Messenger/metabolism
- Sequence Analysis, DNA
- Testis/metabolism
- Tissue Distribution
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Affiliation(s)
- R T Richardson
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill, NC, Chapel Hill, USA.
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31
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Richardson RT, Batova IN, Widgren EE, Zheng LX, Whitfield M, Marzluff WF, O'Rand MG. Characterization of the histone H1-binding protein, NASP, as a cell cycle-regulated somatic protein. J Biol Chem 2000; 275:30378-86. [PMID: 10893414 DOI: 10.1074/jbc.m003781200] [Citation(s) in RCA: 117] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Nuclear autoantigenic sperm protein (NASP), initially described as a highly autoimmunogenic testis and sperm-specific protein, is a histone-binding protein that is a homologue of the N1/N2 gene expressed in oocytes of Xenopus laevis. Here, we report a somatic form of NASP (sNASP) present in all mitotic cells examined, including mouse embryonic cells and several mouse and human tissue culture cell lines. Affinity chromatography and histone isolation demonstrate that NASP from myeloma cells is complexed only with H1, linker histones. Somatic NASP is a shorter version of testicular NASP (tNASP) with two deletions in the coding region arising from alternative splicing and differs from tNASP in its 5' untranslated regions. We examined the relationship between NASP mRNA expression and the cell cycle and report that in cultures of synchronized mouse 3T3 cells and HeLa cells sNASP mRNA levels increase during S-phase and decline in G(2), concomitant with histone mRNA levels. NASP protein levels remain stable in these cells but become undetectable in confluent cultures of nondividing CV-1 cells and in nonmitotic cells in various body tissues. Expression of sNASP mRNA is regulated during the cell cycle and, consistent with a role as a histone transport protein, NASP mRNA expression parallels histone mRNA expression.
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Affiliation(s)
- R T Richardson
- Department of Cell Biology and Anatomy and the Program in Molecular Biology and Biotechnology, University of North Carolina at Chapel Hill, North Carolina 27599, USA
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32
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Abstract
The human nuclear autoantigenic sperm protein, NASP, is a testicular histone-binding protein of 787 amino acids to which most vasectomized men develop autoantibodies. In this study to define the boundaries of antigenic regions and epitope recognition pattern, recombinant deletion mutants spanning the entire protein coding sequence and a human NASP cDNA sublibrary were screened with vasectomy patients' sera. Employing panel sera from 21 vasectomy patients with anti-sperm antibodies, a heterogeneous pattern of autoantibody binding to the recombinant polypeptides was detected in ELISA and immunoblotting. The majority of sera (20/21) had antibodies to one or more of the NASP fusion proteins. Antigenic sites preferentially recognized by the individual patients' sera were located within aa 32-352 and aa 572-787. Using a patient's serum selected for its reactivity to the whole recombinant protein in Western blots, cDNA clones positive for the C-terminal domain of the molecule were identified. The number and location of linear epitopes in this region were determined by synthetic peptide mapping and inhibition studies. The epitope-containing segment was delimited to the sequence aa 619-692 and analysis of a series of 74 concurrent overlapping 9mer synthetic peptides encompassing this region revealed four linear epitopes: amino acid residues IREKIEDAK (aa 648-656), KESQRSGNV (aa 656-664), AELALKATL (aa 665-673) and GFTPGGGGS (aa 680-688). All individual patients' sera reacted with epitopes within the sequence IREellipsis.GGS (aa 648-688). The strongest reactivity was displayed by peptides corresponding to the sequence AELALKATL (aa 665-673). Thus, multiple continuous autoimmune epitopes in NASP involving sequences in the conserved C-terminal domain as well as in the less conserved testis-specific N-terminal region comprising the histone-binding sites, as predicted for an antigen-driven immune response, may be a target of autoantibodies in vasectomized men and may provide a relevant laboratory variable to describe more accurately the spectrum of autoantibody specificities associated with the clinical manifestation of vasectomy.
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Affiliation(s)
- I N Batova
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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33
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Hamil KG, Sivashanmugam P, Richardson RT, Grossman G, Ruben SM, Mohler JL, Petrusz P, O'Rand MG, French FS, Hall SH. HE2beta and HE2gamma, new members of an epididymis-specific family of androgen-regulated proteins in the human. Endocrinology 2000; 141:1245-53. [PMID: 10698202 DOI: 10.1210/endo.141.3.7389] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
HE2 is an epididymis-specific sperm-binding secretory protein. We isolated a family of HE2-related complementary DNAs from a human caput/corpus library. The transcripts code for identical 71-amino acid N-termini and different C-termini, and 5'- and 3'-untranslated regions. Compared with the original HE2, HE2beta and HE2gamma proteins have a 25-amino acid deletion near the C-terminus, and HE2gamma isoforms have a second deletion. These frame-shifting deletions result in C-termini differing in length, amino acid sequence, including number of cysteines, and isoelectric point. Identical sequences and deletion start and stop points indicate the HE2 isoforms are derived from alternative splicing of 8 or more exons of a single gene. Northern hybridization revealed that the 0.9-kb messenger RNA (mRNA) is most abundant in human caput; there is much less of it (20%) in corpus and little (<5%) in cauda. In castrated Macaca mulatta, HE2 mRNA decreased to 10% of sham-operated levels. Testosterone replacement maintained HE2 mRNA 3- to 5-fold higher than castrate levels, indicating its androgen dependence. Immunohistochemical staining revealed that the beta1 form is highly expressed in principal cells of the initial segment and caput. It is secreted into the lumen and binds to the sperm surface in the postacrosomal and neck regions. The beta2 form is expressed in principal cells primarily in efferent ducts.
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Affiliation(s)
- K G Hamil
- Department of Pediatrics, University of North Carolina School of Medicine, Chapel Hill 27599-7500, USA
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34
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Sivashanmugam P, Richardson RT, Hall S, Hamil KG, French FS, O'Rand MG. Cloning and characterization of an androgen-dependent acidic epididymal glycoprotein/CRISP1-like protein from the monkey. J Androl 1999; 20:384-93. [PMID: 10386818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
Abstract
A cDNA encoding an acidic epididymal glycoprotein (AEG)-like, CRISP1 (cysteine-rich secretory protein) protein from the monkey (Macaca mullata) epididymis has been cloned and sequenced. The monkey AEG (mAEG) has an open reading frame that encodes a protein containing 249 amino acids with a deduced molecular mass of 28 kDa. The mAEG protein sequence is 85% identical to human and 44% identical to mouse CRISP1, including all 16 conserved cysteine residues. mAEG also shows a significant amino acid homology with other CRISP proteins, rat AEG/DE, human TPX1/CRISP2, and guinea pig acrosomal autoantigen 1 (AA1). In addition, mAEG shows somewhat less homology to a toxin from the Mexican beaded lizard and to a human glioma pathogenesis-related protein. Northern blot analysis shows that the mRNA for mAEG is expressed in all the regions of the epididymis except the caput and was not detected in the testis, prostate, seminal vesicle, and brain. In castrated animals, mAEG gene expression in the epididymis is significantly diminished; however, testosterone enanthate replacement restored the normal level of expression, demonstrating that expression of mAEG is androgen dependent. Western blot analysis of monkey epididymal regions using mouse antirecombinant human AEG identified a 28-kDa protein only in the caudal region. Immunohistochemical analysis identified mAEG only in the principal cells of the cauda epididymal epithelium. Immunofluorescence analysis identified mAEG on the principal piece of the sperm tail and as small patches over the middle piece and head regions. The results described in the present study suggest that mAEG (CRISP1) is secreted in the monkey epididymis, regulated by androgens and present on epididymal spermatozoa.
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Affiliation(s)
- P Sivashanmugam
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill, 27599-7090, USA
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35
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Wen Y, Richardson RT, O'rand MG. Processing of the sperm protein Sp17 during the acrosome reaction and characterization as a calmodulin binding protein. Dev Biol 1999; 206:113-22. [PMID: 9986726 DOI: 10.1006/dbio.1998.9137] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In this study we have demonstrated that the native rabbit sperm protein, Sp17, is a 22- to 24-kDa triplet of proteins in washed ejaculated rabbit spermatozoa and is unaffected by capacitation. However, during the acrosome reaction, Sp17 is processed from a 22- to 24-kDa triplet of proteins to a triplet of proteins at 17-19 kDa by the removal of amino acids from the C-terminal. Recombinant rabbit Sp17 (rRSp17) can also be proteolytically processed by acrosome-reacted spermatozoa in a similar manner. Protease inhibitors prevent the proteolytic processing of Sp17. Both forms of native Sp17 remain associated with acrosome-reacted spermatozoa and are solubilized by ionic detergents. Previously, sequence analysis of Sp17 revealed that Sp17 amino acids 108-137 were 52% identical to the calmodulin binding domain of neuromodulin and contained an IQ motif found in other calmodulin binding proteins. In this study, a truncated recombinant Sp17, rRSp17CB, which lacks amino acids 118-146, including the potential calmodulin binding site, was made. Recombinant rabbit Sp17, but not rRSp17CB, binds to calmodulin in the presence of Ca2+ or EDTA, under reduced or nonreduced conditions in biotinylated-calmodulin overlay assays. In DSS crosslinker experiments, calmodulin bound to rRSp17 in a 1:1 ratio but not to rRSp17CB. Additionally, biotinylated rRSp17 interacts with native sperm calmodulin. We propose that the processing of native Sp17, by removing a C-terminal fragment during the acrosome reaction, might be a mechanism to regulate the calmodulin binding activity of Sp17 and provide calmodulin at specific sites after the acrosome reaction.
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Affiliation(s)
- Y Wen
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, 27599, USA
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36
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Lenz FA, Gracely RH, Baker FH, Richardson RT, Dougherty PM. Reorganization of sensory modalities evoked by microstimulation in region of the thalamic principal sensory nucleus in patients with pain due to nervous system injury. J Comp Neurol 1998; 399:125-38. [PMID: 9725706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Stimulation of the somatosensory system is more likely to evoke pain in patients with chronic pain after nervous system injury than in patients without somatosensory abnormalities. We now describe results of stimulation through a microelectrode at microampere thresholds (threshold microstimulation; TMIS) in the region of the human thalamic principal sensory nucleus (ventral caudal; Vc) during operations for treatment of movement disorders or of chronic pain. Patients were trained preoperatively to use a standard questionnaire to describe the location (projected field) and quality of sensations evoked by TMIS intraoperatively. The region of Vc was divided on the basis of projected fields into areas representing the part of the body where the patients experienced chronic pain (pain affected) or did not experience chronic pain (pain unaffected) and into a control area located in the thalamus of patients with movement disorders and no experience of chronic pain. The region of the Vc was also divided into a core region and a posterior-inferior region. The core was defined as the region above a standard radiologic horizontal line (anterior commissure-posterior commissure line; ACPC line) where the majority of cells responded to innocuous somatosensory stimulation. The posterior-inferior area was a cellular area posterior and inferior to the core. In both the core and the posterior-inferior regions, the proportion of sites where TMIS evoked pain was larger in pain-affected and unaffected areas than in control areas. The number of sites where thermal (warm or cold) sensations were evoked was correspondingly smaller, so that the total of pain-plus-thermal (sensation of warmth or cold) sites was the same in all areas. Therefore, sites pain where stimulation evoked pain in patients with neuropathic pain (i.e., pain following an injury to the nervous system) may correspond to sites where thermal sensations were evoked by stimulation in patients without somatosensory abnormality.
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Affiliation(s)
- F A Lenz
- Department of Neurosurgery, Johns Hopkins Hospital, Baltimore, Maryland 21287-7713, USA.
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37
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Hammacher A, Richardson RT, Layton JE, Smith DK, Angus LJ, Hilton DJ, Nicola NA, Wijdenes J, Simpson RJ. The immunoglobulin-like module of gp130 is required for signaling by interleukin-6, but not by leukemia inhibitory factor. J Biol Chem 1998; 273:22701-7. [PMID: 9712900 DOI: 10.1074/jbc.273.35.22701] [Citation(s) in RCA: 62] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The transmembrane protein gp130 is a shared component of the receptor complexes for the interleukin-6 (IL-6)-type cytokines, which include IL-6, leukemia inhibitory factor (LIF) and oncostatin M (OSM). In addition to its role in the generation of high affinity receptors, gp130 is required for signal transduction by these cytokines. In the present study we have examined the role of the N-terminal located, extracellular immunoglobulin (Ig)-like module of gp130 in signal transduction by IL-6 and LIF. We have expressed wild-type human gp130 or three mutants in murine myeloid M1-UR21 cells that lack functional endogenous gp130 but express the IL-6 receptor (IL-6R) and the LIF receptor (LIFR). By measuring cellular responses, such as morphological changes upon differentiation, soft agar colony formation, and induction of tyrosine phosphorylation of the signal transducer and activator of transcription, STAT3, we show that signaling by IL-6, but not LIF, is significantly reduced by mutations in the Ig-like module of gp130. However, the binding of 125I-labeled IL-6 or LIF is not affected by these mutations. We also present evidence that the Ig-like module forms part of the epitope of an anti-gp130 monoclonal antibody that neutralizes the bioactivity of IL-6, but not of LIF or OSM. The data suggest that gp130-activation by IL-6 and LIF requires different regions of gp130, that the Ig-like module of gp130 may be required for IL-6-induced gp130 dimerization, and that the stoichiometry of the high affinity IL-6 receptor-complex differs from those of the receptor-complexes for LIF and OSM.
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Affiliation(s)
- A Hammacher
- Joint Protein Structure Laboratory, Ludwig Institute for Cancer Research (Melbourne Tumour Biology Branch) and The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3050, Australia.
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38
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Hilton DJ, Richardson RT, Alexander WS, Viney EM, Willson TA, Sprigg NS, Starr R, Nicholson SE, Metcalf D, Nicola NA. Twenty proteins containing a C-terminal SOCS box form five structural classes. Proc Natl Acad Sci U S A 1998; 95:114-9. [PMID: 9419338 PMCID: PMC18144 DOI: 10.1073/pnas.95.1.114] [Citation(s) in RCA: 601] [Impact Index Per Article: 23.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
The four members of the recently identified suppressor of cytokines signaling family (SOCS-1, SOCS-2, SOCS-3, and CIS, where CIS is cytokine-inducible SH2-containing protein) appear, by various means, to negatively regulate cytokine signal transduction. Structurally, the SOCS proteins are composed of an N-terminal region of variable length and amino acid composition, a central SH2 domain, and a previously unrecognized C-terminal motif that we have called the SOCS box. By using the SOCS box amino acid sequence consensus, we have searched DNA databases and have identified a further 16 proteins that contain this motif. These proteins fall into five classes based on the protein motifs found N-terminal of the SOCS box. In addition to four new SOCS proteins (SOCS-4 to SOCS-7) containing an SH2 domain and a SOCS box, we describe three new families of proteins that contain either WD-40 repeats (WSB-1 and -2), SPRY domains (SSB-1 to -3) or ankyrin repeats (ASB-1 to -3) N-terminal of the SOCS box. In addition, we show that a class of small GTPases also contains a SOCS box. The expression of representative members of each class of proteins differs markedly, as does the regulation of expression by cytokines. The function of the WSB, SSB, and ASB protein families remains to be determined.
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Affiliation(s)
- D J Hilton
- The Walter and Eliza Hall Institute for Medical Research and The Cooperative Research Center for Cellular Growth Factors, Parkville, Victoria 3050, Australia.
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39
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Abstract
In this study, cDNAs encoding the sperm protein Sp17 from the baboon (Papio papio) have been cloned and sequenced. Three clones, differing in the lengths of their 3' untranslated regions, were identified, which were encoded by mRNA transcripts of 0.8-1.35 kb. The open reading frame encodes 163 amino acids with a predicted molecular mass of 18.8 kDa. The baboon Sp17 protein sequence is 97% identical to human Sp17 but differs significantly by the addition of 12 amino acids at the C-terminal, providing an additional potential protein kinase C phosphorylation site. Northern blot analysis demonstrated that the baboon Sp17 mRNA was specific to the baboon testes and was not detected in the ovary, placenta, or any of the other somatic tissues tested. Western blot analysis using anti-Sp17 antibodies demonstrated that the native baboon sperm Sp17 protein consists of a doublet with an apparent M(r) of 26.5 and 27.2 kDa. Immunocytochemical staining of baboon testis with anti-Sp17 antibodies demonstrated Sp17 in spermatocytes, spermatids, and spermatozoa within the seminiferous epithelium. No specific staining was observed on spermatogonia, Sertoli cells, Leydig cells, or other somatic cell types.
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Affiliation(s)
- P A Adoyo
- Department of Cell Biology and Anatomy, University of North Carolina, Chapel Hill 27599, USA
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40
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Richardson RT, O'Rand MG. Site-directed mutagenesis of rabbit proacrosin. Identification of residues involved in zona pellucida binding. J Biol Chem 1996; 271:24069-74. [PMID: 8798644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
The mammalian acrosomal sperm protease proacrosin plays a role in fertilization by proteolysis of the oocyte's outer investments. In addition to its serine protease activity, acrosin from several species is known to have binding activity for the zona pellucida, and this action may serve to anchor sperm during zona penetration. In this study, proacrosin was purified from acid extracts of rabbit sperm and shown to bind to homologous zona pellucida using an in vitro assay. Measurement of this binding activity indicated a high affinity saturable interaction with a KD = 1.4 x 10(-8) M. Using cDNAs obtained from previously cloned and sequenced rabbit proacrosin and a splice variant that encodes a shorter form of acrosin (Richardson, R. T., and O'Rand, M. G. (1994) Biochim. Biophys. Acta 1219, 215-218), constructs of various sizes were produced using polymerase chain reaction and expressed as recombinant proteins. In the same in vitro zona binding assay, a construct representing residues 1-279 of rabbit proacrosin was found to bind to zona with a high affinity similar to that of native proacrosin, KD = 2.1 x 10(-8) M. By making smaller recombinant fragments and assaying them for zona binding activity, the location of the binding site was mapped to residues 47-94. Protein modeling of rabbit proacrosin using chymotrypsinogen A as a three-dimensional model indicated that an exposed loop Asp35 to His40 in chymotrypsinogen A is extended with an additional five amino acid residues in rabbit proacrosin from Ile43 to His53 containing arginine residues Arg47, Arg50 and Arg51. Site-directed mutagenesis of arginine residues Arg50 and Arg51 to alanine produced a recombinant without significant zona binding activity. These results are consistent with the hypothesis that rabbit proacrosin contains a specific zona pellucida binding site and that the loop containing arginine residues 50 and 51 is critical for zona binding activity.
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Affiliation(s)
- R T Richardson
- Department of Cell Biology and Anatomy, University of North Carolina, Chapel Hill, North Carolina 27599, USA
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41
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Abstract
In the present study we have cloned and sequenced two testis-specific cDNAs (1.3 kb and 1.6 kb) encoding a human sperm protein, designated HSp17. Each cDNA gave rise to identical protein sequences and differed only in the 5' untranslated region. The predicted amino-acid sequence revealed a protein of 17.5 kDa which exhibited a high degree of homology with both rabbit and mouse Sp17. Analysis of native and recombinant Sp17 by SDS-PAGE has shown the apparent molecular weight of the protein to be 24.5 kDa.
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Affiliation(s)
- I A Lea
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill 27599, USA.
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Webber WR, Lesser RP, Richardson RT, Wilson K. An approach to seizure detection using an artificial neural network (ANN). Electroencephalogr Clin Neurophysiol 1996; 98:250-72. [PMID: 8641148 DOI: 10.1016/0013-4694(95)00277-4] [Citation(s) in RCA: 94] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
We have developed an EEG seizure detector based on an artificial neural network. The input layer of the ANN has 31 nodes quantifying the amplitude, slope, curvature, rhythmicity, and frequency components of EEG in a 2 sec epoch. The hidden layer has 30 nodes and the output layer has 8 nodes representing various patterns of EEG activity (e.g. seizure, muscle, noise, normal). The value of the output node representing seizure activity is averaged over 3 consecutive epochs and a seizure is declared when that average exceeds 0.65. Among 78 randomly selected files from 50 patients not in the original training set, the detector declared at least one seizure in 76% of 34 files containing seizures. It declared no seizures in 93% of 44 files not containing seizures. Four false detections during 4.1 h of recording yielded a false detection rate of 1.0/h. The detector can continuously process 40 channels of EEG with a 33 MHz 486 CPU. Although this method is still in its early stages of development, our results represent proof of the principle that ANN could be utilized to provide a practical approach for automatic, on-line, seizure detection.
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Affiliation(s)
- W R Webber
- Johns Hopkins Epilepsy Center, Johns Hopkins Hospital, Baltimore, MD 21287-7143, USA.
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Abstract
The present study characterizes the sperm protein Sp17 in the mouse. Sp17 is a mammalian testis- and sperm-specific protein that has been isolated, sequenced, and characterized from rabbit testis and spermatozoa. In this study, a rabbit Sp17 cDNA probe representing the entire protein coding region was used to screen a mouse testis cDNA library to obtain the mouse Sp17 sequence. The mouse mRNa for Sp17 encodes a 149-amino acid protein with a predicted molecular weight of 17,296. The mouse Sp17 (MSp17) cDNA sequence is 82% identical to the rabbit Sp17 cDNA sequence while the MSp17 protein sequence is 74% identical to the rabbit protein sequence. The presence of native Sp17 in mouse spermatozoa and testis was demonstrated by Western blot analysis, immunoprecipitation, and immunolocalization. After SDS-PAGE, the native Sp17 has an apparent molecular mass of 24 kDa. The sequence of the native Sp17 was confirmed by Western blots of mouse testis and spermatozoa probed with two anti-peptide antibodies--one, anti-G22C, made against amino acids 61-82 in the rabbit sequence (61-83 in the mouse), and a second, anti-K18C, made against amino acids 120-136 in the C-terminal region in the human sequence (118-134 in the mouse sequence). In the absence of proteolytic inhibitors, part of the C-terminal of native MSp17 is cleaved, giving rise to an 18-kDa band. Sp17 is present in spermatocytes and spermatids in the testis. In spermatozoa, Sp17 is not available to bind antibody on the surface of live, acrosome-intact spermatozoa, but it is present on the equatorial surface of live, acrosome-reacted spermatozoa. In fixed spermatozoa, staining is observed along the length of the principal piece, weakly along the midpiece, and over the acrosomal region of the head. When the acrosome reaction begins, acrosomal staining is seen throughout the equatorial region of the acrosome. Using mimotope analysis, this study has also demonstrated that native Sp17 is a sperm autoantigen and that recombinant mouse Sp17 is immunogenic in males with a highly restricted linear epitope.
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Affiliation(s)
- M Kong
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill 27599, USA
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Yamasaki N, Richardson RT, O'Rand MG. Expression of the rabbit sperm protein Sp17 in COS cells and interaction of recombinant Sp17 with the rabbit zona pellucida. Mol Reprod Dev 1995; 40:48-55. [PMID: 7702869 DOI: 10.1002/mrd.1080400107] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
This study extends our analysis of rabbit recombinant Sp17 (rSp17) by examining whether rSp17 synthesized in transfected COS cells will show a particular localization within the cell and whether the COS cell will bind with zona pellucida. We show, using the crosslinking, reagent DSS that rSp17 can bind to rabbit zona glycoprotein R45 or R55.
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Affiliation(s)
- N Yamasaki
- Department of Cell Biology and Anatomy, University of North Carolina, Chapel Hill 27599
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45
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Abstract
The interaction of the mammalian spermatozoon with the oocyte's extracellular matrix or zona pellucida is a critical first step leading to successful fertilization. In this cell-extracellular matrix interaction it is the carbohydrate of the zona pellucida which serves as the sperm receptor and the surface of the spermatozoon which provides the lectin-like adhesion molecules. To better understand sperm-zona pellucida binding we have analyzed one specific zona binding protein (ZBP). This study has determined the mRNA sequence encoding a mammalian testis and sperm specific protein of 16,891 Da, which we have designated Sp17. Analysis of Sp17 revealed that the mRNA is present in rabbit, mouse, and human testes but not in any somatic tissue tested. In the rabbit, Sp17 is the 17-kDa member of the rabbit sperm autoantigen family of sperm specific autoantigens and is encoded by two mRNAs of 0.9 and 1.1 kb. Each mRNA has a unique 5' untranslated region but both have identical coding regions. The deduced amino acid sequence of the Sp17 ZBP showed several interesting features, including a similarity to the N-terminal of human testis cAMP-dependent protein kinase. Localization of Sp17 on live spermatozoa using antibodies to recombinant Sp17 or to the Sp17 peptide, G22C, revealed that the peptide backbone of Sp17 is inaccessible until the acrosome reaction begins. However, on paraformaldehyde fixed, acrosome intact spermatozoa, the peptide backbone is accessible to the antibodies which localize Sp17 to the apical surface. In the rabbit as well as other similar species in which the corona radiata (granulosa) cells adhere tightly to the zona pellucida and synthesize zona glycoproteins, the fertilizing spermatozoon may have already begun the acrosome reaction within the cumulus oophorus. Thus, the rabbit sperm surface would be modified to expose the Sp17 polypeptide during the final phase of cumulus passage and consequently Sp17 would be available for initial zona binding. The present study has also demonstrated that recombinant Sp17 can bind zona pellucida, dextran, and dextran sulfate.
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Affiliation(s)
- R T Richardson
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill 27599
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Lenz FA, Kwan HC, Martin R, Tasker R, Richardson RT, Dostrovsky JO. Characteristics of somatotopic organization and spontaneous neuronal activity in the region of the thalamic principal sensory nucleus in patients with spinal cord transection. J Neurophysiol 1994; 72:1570-87. [PMID: 7823087 DOI: 10.1152/jn.1994.72.4.1570] [Citation(s) in RCA: 193] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
1. We explored the region of the principal sensory nucleus of thalamus (Vc) during stereotactic surgical procedures for treatment of patients with pain after spinal cord transection (n = 23). Receptive fields (RFs) of thalamic single neurons and locations of sensations evoked by stimulation (projected field, PF) were determined by standard methods. The cellular thalamic region where sensations were evoked at < 25 microA was termed the "region of Vc." The region of Vc in spinal patients was subdivided into different areas according to RF and PF locations. Areas that were distant from the representation of the anesthetic part of the body were termed "spinal control" areas, whereas those that were adjacent to or included in the representation of the area of absolute sensory loss were termed "border zone/anesthetic" areas. The region of Vc in movement disorder patients were termed the "control" area. 2. Border zone/anesthetic areas of thalamus often exhibited increased representations of the border of the anesthetic part of the body in comparison with the representation of the same parts of the body in control and spinal control areas. 3. In control and spinal control areas the locations of RFs and PFs were usually well matched. However, in border zone/anesthetic areas of the thalamus there was frequently a mismatch between the location of RFs and PFs (RF/PF mismatch). In border zone/anesthetic areas, RFs were often located on the border of the anesthetic part of the body whereas PFs were referred to anesthetic parts of the body. 4. Analysis of first- and higher-order properties of spontaneous neuronal activity revealed that spike trains could be classified into two groups with distinct patterns of activity. The R group (n = 49) was characterized by independence of sequential interspike intervals (ISIs), a Poisson distribution of ISIs, initially inhibitory or flat autocovariance function (acvf), and low level of high-frequency bursting. The O group (n = 26) was characterized by correlation of sequential ISIs, large sustained postspike facilitation on the acvf, and high prevalence of high-frequency bursting--all consistent with a bursting pattern of activity. A third group of spike trains (n = 17) had an initially inhibitory or flat acvf and a unimodal, positively shifted, ISI distribution that did not meet criteria for a Poisson distribution. 5. Spike trains in the R group were much more common in control and control spinal areas, whereas those in the O group were more common in border zone/anesthetic areas.(ABSTRACT TRUNCATED AT 400 WORDS)
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Affiliation(s)
- F A Lenz
- Department of Neurosurgery, Johns Hopkins University, Baltimore, Maryland 21287-7713
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Abstract
A 1414 bp cDNA for rabbit preproacrosin (RPA) and a related short preproacrosin (shRPA) cDNA of 951 bp were cloned and sequenced. RPA's 431 amino acid open reading frame encodes a 46,422 kDa protein. shRPA is identical to RPA except that it lacks an internal stretch of 468 bp, such that the encoded protein has a deduced molecular mass of 29,965 kDa. Antiserum against a synthetic peptide representing the light chain of rabbit proacrosin was used on Western blots of rabbit testis and sperm. Under reducing conditions, it revealed two major groups of bands at 50-57 and 29-32 kDa. Several lines of evidence suggest that shRPA is a splice variant of proacrosin and that it encodes a 30-33 kDa protein similar to sperminogen (Siegel, M. et al. (1987) Biol. Reprod. 36, 1063-1068), but apparently lacking proteinase activity.
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Affiliation(s)
- R T Richardson
- Department of Cell Biology and Anatomy, University of North Carolina at Chapel Hill 27599
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Voytko ML, Olton DS, Richardson RT, Gorman LK, Tobin JR, Price DL. Basal forebrain lesions in monkeys disrupt attention but not learning and memory. J Neurosci 1994; 14:167-86. [PMID: 8283232 PMCID: PMC6576852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Cognitive impairments in humans and animals have been linked to dysfunction of neurons in the basal forebrain cholinergic system (BFCS). Degeneration of these cells may be, in part, responsible for some of the cognitive deficits observed in Alzheimer's disease (AD). Although memory deficits are associated with lesions of the BFCS in rats, impairments in memory have been more subtle following similar lesions in monkeys. To evaluate the effects of BFCS lesions on cognitive processes in monkeys, we have systematically investigated the behavioral effects of ibotenic acid injections in the medial septum, nucleus of the diagonal band of Broca, and nucleus basalis of Meynert in cynomolgus monkeys, using a large series of cognitive tasks that examined different mnemonic and attentional abilities. These lesions did not impair accuracy in delayed nonmatching-to-sample, delayed response, simple or concurrent visual discriminations, spatial discriminations, or discrimination reversals. However, these lesions disrupted attentional focusing. Similar impairments in attention have been noted in patients with AD. BFCS lesions increased sensitivity to injections of the cholinergic antagonist scopolamine in a delayed nonmatching-to-sample task, indicating that the central cholinergic system was compromised in these monkeys. In concert, the results of this study suggest that the primate basal forebrain may be more involved in attentional than mnemonic processes, and that degeneration of neurons in the BFCS in cases of AD may contribute to the attention deficits observed in these individuals.
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Affiliation(s)
- M L Voytko
- Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205-2196
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Lenz FA, Seike M, Lin YC, Baker FH, Rowland LH, Gracely RH, Richardson RT. Neurons in the area of human thalamic nucleus ventralis caudalis respond to painful heat stimuli. Brain Res 1993; 623:235-40. [PMID: 8221105 DOI: 10.1016/0006-8993(93)91433-s] [Citation(s) in RCA: 113] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
A population of neurons in the area of human thalamic nucleus ventralis caudalis (Vc) respond to noxious heat stimuli. In the cutaneous core of Vc 6% (6/108) of recorded neurons had a significantly greater response to noxious heat stimuli than to innocuous control stimuli. Half of these neurons (n = 3) also responded to innocuous cold stimuli. Within the region posterior and inferior to the cutaneous core of Vc 5% (4/77) of neurons responded exclusively to noxious heat stimuli. Cells responding to noxious heat were recorded at a greater proportion (66%) of sites where painful sensations were evoked by microstimulation than at sites where nonpainful sensations were evoked (1.5%). The results suggest that neurons in the region of human Vc mediate the sensory aspect of pain.
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Affiliation(s)
- F A Lenz
- Department of Neurosurgery, Johns Hopkins Hospital, Baltimore, MD 21287-7713
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50
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Lenz FA, Seike M, Richardson RT, Lin YC, Baker FH, Khoja I, Jaeger CJ, Gracely RH. Thermal and pain sensations evoked by microstimulation in the area of human ventrocaudal nucleus. J Neurophysiol 1993; 70:200-12. [PMID: 8360716 DOI: 10.1152/jn.1993.70.1.200] [Citation(s) in RCA: 150] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
1. We have studied the sensations evoked by threshold microstimulation (TMS) in the area of the human principal sensory nucleus of the thalamus [ventralis caudalis (Vc)] in patients (n = 11) undergoing stereotactic surgery for the treatment of movement disorders and pain. Preoperatively, patients were trained to describe somatic sensory stimuli using a standard list of descriptors. This same list was used to describe sensations evoked intraoperatively by thalamic microstimulation. Stimulation sites (n = 216) were defined by location within the area where the majority of cells had a reproducible response to innocuous cutaneous stimulation (core region) or in the cellular area posterior and inferior to the core region (posteroinferior region). 2. TMS-evoked sensations were categorized as paresthetic if the descriptors "tingle," "vibration," or "electric current" were chosen by the patient to describe the sensation and as thermal/pain if the descriptors "cool," "warm," "warm and cool," or "pain" were chosen. Thermal/pain sensations were evoked by stimulation in 82% (9/11) of patients and at 19% of sites studied. These results suggest that thalamic microstimulation can evoke thermal/pain sensations reproducibly across patients. 3. Thermal/pain sensations were evoked more frequently by stimulation at sites in the posteroinferior region (30%) than by stimulation at sites in the core region (5%). Nonpainful thermal sensations composed the majority of thermal/pain sensations evoked by stimulation in both the core (80%) and posteroinferior regions (86%). Sites where stimulation evoked pain and nonpainful cool sensations were found anterior to the area where nonpainful warm sensations were evoked. Thermal/pain sensations were evoked at sites located medially near the border between the core and posteroinferior regions. 4. Radiologic techniques were used to determine the presumed nuclear location of stimulation sites. Thermal/pain sensations were evoked less frequently by stimulation in the part of Vc included in the core region than by stimulation in any of the following: the part of Vc included in the posteroinferior region, ventralis caudalis portae nucleus, ventralis caudalis parvocellularis nucleus, or the white matter underlying the ventral nuclear group. 5. The location of the sensation evoked by stimulation [projected field (PF)] varied widely in size. PFs were categorized as large if they involved more than one part of the body (e.g., face and arm) or if they crossed at least one joint proximal to the metacarpophalangeal joint or to the metatarsophalangeal joint. PFs were more frequently large at sites where thermal/pain sensations were evoked by TMS (33%) than at those where paresthesia were evoked (6%).(ABSTRACT TRUNCATED AT 400 WORDS)
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Affiliation(s)
- F A Lenz
- Department of Neurosurgery, Johns Hopkins Hospital, Baltimore 21287-7713
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