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Samy MVG, Perumal S. Systems pharmacology and multi-scale mechanism of Enicostema axillare bioactives in treating Alzheimer disease. Inflammopharmacology 2024; 32:575-593. [PMID: 37845599 DOI: 10.1007/s10787-023-01348-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 09/19/2023] [Indexed: 10/18/2023]
Abstract
As a progressive neurological disease with increased morbidity and mortality, Alzheimer Disease (AD) is characterized by neuron damage that controls memory and mental functions. Enicostema axillare (EA), an herb with a history of combativeness and effectiveness in treating Rheumatoid Arthritis, Cancer, and Diabetes, is used in Indian folk medicine from a holistic point of view. Though the herb is used for many illnesses, the molecular mechanism of its bioactive on AD has not been deciphered by intricate research. A unique pharmacology approach based on ADME drug screening and targeting, pathway enrichment (GO and KEGG), and network pharmacology, was established to explore the molecular mechanisms of E. axillare (EA) bioactive compounds for the treatment of AD. In brief, we bring to light the three active compounds of EA and seven potential molecular targets of AD, which are mainly implicated in four signaling pathways, i.e., MAPK, Apoptosis, neurodegeneration, and the TNF pathway. Moreover, the network analysis of the active compounds, molecular targets, and their pathways reveals the pharmacological nature of the compounds. Further, molecular docking studies were carried out to explore the interactions between the EA bioactive compounds and the targets and examine the binding affinity. The outcome of the work reflects the potential therapeutic effects of the compounds for treating AD through the modulation of the key proteins, which further corroborates the reliability of our network pharmacology analysis. This study not only helps in understanding the molecular mechanism of the drugs but also helps in finding and sorting new drugs for the treatment of AD, and other complex diseases through modern medicine.
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Affiliation(s)
| | - Sasidharan Perumal
- Cell and Molecular Biology Division, Biome Live Analytical Center, Karaikudi, Tamil Nadu, India.
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Perumal S, Samy MG, Subramanian D. Effect of novel therapeutic medicine swertiamarin from Enicostema axillare in zebrafish infected with Salmonella typhi. Chem Biol Drug Des 2022; 100:1033-1041. [PMID: 36178071 DOI: 10.1111/cbdd.14146] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 08/05/2022] [Accepted: 09/11/2022] [Indexed: 01/25/2023]
Abstract
Herbal treatments have been practiced by humans over centuries and therefore possess time-proven safety. However, it is crucial to evaluate the toxic effects of herbal medicine to confirm their safety, particularly when developing therapeutic drugs. Use of laboratory animals such as mice, rat, and rabbits was considered as gold standard in herbal toxicity assessments. However, in the last few decades, the ethical consideration of using higher vertebrates for toxicity testing has become more controversial. As a possible alternative model involving lower vertebrates such as zebra fish were introduced. Hence in the present study, swertiamain compound isolated from E. axillare was assessed for it antimicrobial activity in zebra fish larvae againt S. typhi. The cumulative mortality rate and bacterial localization in zebra fish larvae were studied. Biochemical markers assays were performed to find the preventive role of the compound during the typhoid infection. The results showed that zebra fish can be successfully used as a model to study typhoid infection and the anti-bacterial compound swertiamarin used in this study clears the bacterial load and pathogenic symptoms to a great extent.
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Affiliation(s)
- Sasidharan Perumal
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India
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Perumal S, Gopal Samy M, Subramanian D. In vitro and in silico screening of novel typhoid drugs from endangered herb ( Enicostema axillare). J Biomol Struct Dyn 2022; 41:2926-2936. [PMID: 35174771 DOI: 10.1080/07391102.2022.2041488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
In the present study, antibacterial activity of swertiamarin from Enicostema axillare (Lam) was checked against three different human gram-negative pathogens namely Salmonella typhi, Klebsiella pneumoniae and Shigella flexneri. Minimum inhibitory concentration assay revealed low dose and efficient activity of swertiamarin on the above said pathogens. Though swertiamarin is a well-studied and characterized compound, there is no experimental proof available for its antibacterial activity. To gain more insight about the antibacterial efficiency of swertiamarin against typhoid causing S. typhi, a comparative molecular docking of S. typhi OmpF (3NSG) was performed with swertiamarin and other typhoid drugs available in the market which exposed better activity strength of swertiamarin compared with that of the other drugs. Further, molecular dynamics of S. typhi OmpF-swertiamarin shows good flexibility and stability at 100 ns. The outcome of this work will definitely provide an idea of using very low dose of swertiamarin as a potent and promising drug against typhoid fever. Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Sasidharan Perumal
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India
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Perumal S, Gopal Samy MV, Subramanian D. Developmental toxicity, antioxidant, and marker enzyme assessment of swertiamarin in zebrafish (Danio rerio). J Biochem Mol Toxicol 2021; 35:e22843. [PMID: 34251064 DOI: 10.1002/jbt.22843] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Revised: 06/01/2021] [Accepted: 07/01/2021] [Indexed: 11/08/2022]
Abstract
A secoiridoid glycoside called swertiamarin has been widely used as a herbal medicine for many decades. In particular, swertiamarin from the Enicostema axillare herb has been used as a multipurpose drug to treat innumerable health problems. As this medicine is consumed orally, its toxicity level should be determined. To examine the safety of this compound, toxicology work was done in zebrafish, and this is the first report to describe swertiamarin toxicity in zebrafish. Zebrafish embryos were used in this swertiamarin toxicity study, and morphological changes were observed. Further, the compound was also studied in adult zebrafish to determine the impact of the compound on the fish liver. Enzyme profiling with superoxide dismutase, glutathione peroxidase, catalase, reduced glutathione levels, glutathione S-transferase, lactate dehydrogenase, glutamic oxaloacetic transaminases, lipid peroxidation, Na+ /K+ -ATPase, and glutamic pyruvic transaminases) was evaluated (p ≤ 0.05). Results suggest that swertiamarin is a safe drug only at a low concentration (40 µM). This study also shows that even herbal medicinal compounds may be toxic to humans at higher dosages. Hence, irrespective of whether a drug is synthetic or natural, it needs to be tested for its toxicity before use in humans.
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Affiliation(s)
- Sasidharan Perumal
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India
| | - Madhana V Gopal Samy
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India
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Perumal S, Gopal Samy MV, Subramanian D. Selenium nanoparticle synthesis from endangered medicinal herb (Enicostema axillare). Bioprocess Biosyst Eng 2021; 44:1853-1863. [PMID: 33855637 DOI: 10.1007/s00449-021-02565-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Accepted: 03/31/2021] [Indexed: 01/10/2023]
Abstract
Green synthesis of selenium nanoparticles (SeNPs) was achieved by a simple biological procedure using the reducing power of E. axillare leaf extract. This method is capable of producing SeNPs in a size range of around 56.23-98.18 nm, under ambient lab condition. The synthesized nanoparticles were characterized by UV-Vis spectroscopy, Fourier-transform infrared spectroscopy (FTIR), Scanning electron microscopy (SEM) and Energy-dispersive X-Ray (EDX). To check the potential hazards of nanotoxicity median lethal concentration (LC50) and Na + /K + -ATPase activity was assessed on zebra fish which showed the LC50 of 258.72 ppm for 96 h and Na + /K + -ATPase seems to significantly decrease with increase in SeNPs concentration. Antibactericidal activity explored the use of SeNPs against wide range of pathogens. Cytotoxicity of SeNPs was assayed against human lung cancer cells (A549) confirmed that SeNPs are able to inhibit the cell growth by dose-dependent manner. In conclusion, green synthesized selenium nanoparticles are less toxic and harmless. This is the first report on green synthesized selenium nanoparticles using E. axillare possessing anti-bacterial and anti-cancer activity.
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Affiliation(s)
- Sasidharan Perumal
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India.,Department of Zoology, GTN Arts College, Dindigul, India
| | - Madhana Vigneshwari Gopal Samy
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India.,Department of Zoology, GTN Arts College, Dindigul, India
| | - Dharaneedharan Subramanian
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India. .,Department of Zoology, GTN Arts College, Dindigul, India.
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Manikandan T, Padmalaya G, Mahalakshmi S, Nivethitha AS, Pavithran V, Perumal S, Sreeja BS, Senthil Kumar P. Facile hydrothermal bio-synthesis of cellulose acetate templated CuS nanorods like fibres: antibacterial, cytotoxicity effects and DNA cleavage properties against A549 lung cancer cells. IET Nanobiotechnol 2020; 14:47-52. [PMID: 31935677 DOI: 10.1049/iet-nbt.2019.0193] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
In this research, the hydrothermal method was used for synthesising cellulose acetate (CA) templated nanorods like CuS fibres using vegetable extract (Brassica oleracea var. italica). These extracts act as a reducing agent in the presence of CA. Surprisingly, when the same reaction was carried out in the absence of CA and broccoli extract, structural morphology disappeared and was found as agglomerated. In the presence of cellulose templated extract mediated CuS has revealed as nanorods like fibres and was confirmed by field emission scanning electron microscope analysis. Their crystallinity property of CuS nanoparticles (NPs) and cellulose templated biosynthesised CuS NPs was analysed and compared using X-ray diffraction technique. The biological activities of the obtained product were examined for antibacterial assessment against two bacterial strains that include two-gram negative strains (E.Coli and S. aureus). The nanostructured product found to exhibit excellent antibacterial agent against all the strains. Biosynthesised nanostructure showed its efficacy against A549 lung cancer cells which might attribute to a larger surface to volume ratio of nanorods like fibres. The authors observation suggest that CuS nanorods like fibres can significantly reduce the cell growth with IC50 value of 31.2 μg/ml.
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Affiliation(s)
- T Manikandan
- Department of Electronics and Communication Engineering, Rajalakshmi Engineering College, Thandalam - 602105, Tamil Nadu, India.
| | - G Padmalaya
- Department of Electronics and Communication Engineering, SSN College of Engineering, Kalavakkam - 603110, Tamil Nadu, India
| | - S Mahalakshmi
- Department of Electronics and Communication Engineering, Rajalakshmi Engineering College, Thandalam - 602105, Tamil Nadu, India
| | - A S Nivethitha
- Department of Electronics and Communication Engineering, Rajalakshmi Engineering College, Thandalam - 602105, Tamil Nadu, India
| | - V Pavithran
- Department of Electronics and Communication Engineering, Rajalakshmi Engineering College, Thandalam - 602105, Tamil Nadu, India
| | - S Perumal
- Department of Electronics and Communication Engineering, Rajalakshmi Engineering College, Thandalam - 602105, Tamil Nadu, India
| | - B S Sreeja
- Department of Electronics and Communication Engineering, SSN College of Engineering, Kalavakkam - 603110, Tamil Nadu, India
| | - P Senthil Kumar
- Department of Chemical Engineering, SSN College of Engineering, Kalavakkam - 603110, Tamil Nadu, India
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Femia G, Lanlois N, Raleigh J, Gray B, Othman F, Perumal S, Semsarian C, Puranik R. 304 Comparing Conventional Autopsy to Post-Mortem MR and CT in Determining the Cause of Sudden and/or Unexpected Death. Heart Lung Circ 2020. [DOI: 10.1016/j.hlc.2020.09.311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Ciogli A, Vivek Kumar S, Mancinelli M, Mazzanti A, Perumal S, Severi C, Villani C. Atropisomerism in 3-arylthiazolidine-2-thiones. A combined dynamic NMR and dynamic HPLC study. Org Biomol Chem 2018; 14:11137-11147. [PMID: 27830854 DOI: 10.1039/c6ob02145j] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Sterically hindered 3-arylthiazolidine-2-thiones were prepared by a solvent-free reaction with arylisothiocyanates and 1,4-dithiane-2,5-diol. Atropisomerism was observed in two compounds (3 and 4, aryl = 1-naphthyl and 2-methylnaphth-1-yl), whose rotational energy barriers were measured using dynamic NMR and dynamic HPLC. The experimental analyses were supported by DFT calculations. Thermally stable atropisomers were obtained by dehydration of compounds 3 and 4 and the absolute configuration of the atropisomers of compound 6 was determined by theoretical simulation of the ECD and VCD spectra.
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Affiliation(s)
- A Ciogli
- Department of Chemistry and Technologies of Drug, Sapienza University of Rome, Piazzale A. Moro 5, I-00185 Rome, Italy
| | - S Vivek Kumar
- Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai-625021, Tamil Nadu, India
| | - M Mancinelli
- Department of Industrial Chemistry "Toso Montanari", University of Bologna, Viale Risorgimento 4, I-40136 Bologna, Italy.
| | - A Mazzanti
- Department of Industrial Chemistry "Toso Montanari", University of Bologna, Viale Risorgimento 4, I-40136 Bologna, Italy.
| | - S Perumal
- Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai-625021, Tamil Nadu, India
| | - C Severi
- Department of Industrial Chemistry "Toso Montanari", University of Bologna, Viale Risorgimento 4, I-40136 Bologna, Italy.
| | - C Villani
- Department of Chemistry and Technologies of Drug, Sapienza University of Rome, Piazzale A. Moro 5, I-00185 Rome, Italy
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Perumal S, Muthumanickam S, Elangovan A, Karthik R, kannan RS, Mothilal KK. Bauhinia tomentosa Leaves Extract as Green Corrosion Inhibitor for Mild Steel in 1M HCl Medium. ACTA ACUST UNITED AC 2017. [DOI: 10.1007/s40735-017-0072-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Karthick T, Balachandran V, Perumal S. Spectroscopic investigations, molecular interactions, and molecular docking studies on the potential inhibitor "thiophene-2-carboxylicacid". Spectrochim Acta A Mol Biomol Spectrosc 2015; 141:104-112. [PMID: 25677530 DOI: 10.1016/j.saa.2015.01.025] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2014] [Revised: 01/11/2015] [Accepted: 01/15/2015] [Indexed: 06/04/2023]
Abstract
Thiophene derivatives have been focused in the past decades due to their remarkable biological and pharmacological activities. In connection with that the conformational stability, spectroscopic characterization, molecular (inter- and intra-) interactions, and molecular docking studies on thiophene-2-carboxylicacid have been performed in this work by experimental FT-IR and theoretical quantum chemical computations. Experimentally recorded FT-IR spectrum in the region 4000-400 cm(-1) has been compared with the scaled theoretical spectrum and the spectral peaks have been assigned on the basis of potential energy distribution results obtained from MOLVIB program package. The conformational stability of monomer and dimer conformers has been examined. The presence of inter- and intramolecular interactions in the monomer and dimer conformers have been explained by natural bond orbital analysis. The UV-Vis spectra of the sample in different solvents have been simulated and solvent effects were predicted by polarisable continuum model with TD-DFT/B3LYP/6-31+G(d,p) method. To test the biological activity of the sample, molecular docking (ligand-protein) simulations have been performed using SWISSDOCK web server. The full fitness (FF) score and binding affinity values revealed that thiophene-2-carboxylicacid can act as potential inhibitor against inflammation.
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Affiliation(s)
- T Karthick
- Department of Physics, K S R Institute for Engineering and Technology, Tiruchengode 637215, India
| | - V Balachandran
- Centre for Research, Department of Physics, A.A. Govt. Arts College, Musiri, Tiruchirappalli 621211, India.
| | - S Perumal
- PG & Research Department of Physics, S.T. Hindu College, Nagarcoil 629002, India
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Perumal S, Mahmud R, Ramanathan S. Anti-infective potential of caffeic acid and epicatechin 3-gallate isolated from methanol extract of Euphorbia hirta (L.) against Pseudomonas aeruginosa. Nat Prod Res 2015; 29:1766-9. [PMID: 25571920 DOI: 10.1080/14786419.2014.999242] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
Euphorbia hirta (L.) plant is traditionally used in Malaysia for the treatment of gastrointestinal, bronchial and respiratory ailments caused by nosocomial infectious agents. Bioactivity-guided fractionation of the methanol extract of the aerial parts of E. hirta and analysis using high-performance liquid chromatography have led to the isolation of two antibacterial compounds. These compounds were identified as caffeic acid (CA) and (-)-epicatechin 3-gallate (ECG) based on spectroscopic analyses and comparison with previously published data. Using broth microdilution method, both ECG and CA had demonstrated significant minimum inhibitory concentration of 15.6 and 31.3 μg/mL respectively, against Pseudomonas aeruginosa. Time-kill assessment of ECG and CA displayed bactericidal effect on P. aeruginosa cells.
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Affiliation(s)
- S Perumal
- a School of Pharmaceutical Sciences, Universiti Sains Malaysia , 11800 Penang , Malaysia
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Karthick T, Balachandran V, Perumal S, Lakshmi A. Rotational isomers, spectroscopic (FT-IR, FT-Raman) studies and quantum chemical calculations on 2,4,6-tris(dimethylaminomethyl) phenol. Spectrochim Acta A Mol Biomol Spectrosc 2013; 113:52-66. [PMID: 23714184 DOI: 10.1016/j.saa.2013.04.095] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2012] [Revised: 04/13/2013] [Accepted: 04/24/2013] [Indexed: 06/02/2023]
Abstract
In this work, the spectroscopic characterization of 2,4,6-tris(dimethylaminomethyl) phenol; a novel promoter factor for DNA has been studied primarily. The FT-IR (4000-400 cm(-1)) and FT-Raman (3500-100 cm(-1)) spectra have been recorded on the solid phase of the title molecule. The spectroscopic signature of the title molecule has been found by comparing experimental FT-IR, FT-Raman spectra with the theoretical IR and Raman spectra of the stable isomer geometry at density functional theory (DFT) method with 6-311++G(d,p) basis set. Further, the vibrational assignments were performed on the basis of potential energy distribution (PED). The natural atomic orbital and natural population analysis performed in this study ensures us to know about the delocalization of charge and electron density of atoms within the molecule. Analysis of natural bond orbitals (NBOs) and HOMO-LUMO energy gap of the compound provides information about its chemical stability and intramolecular charge transfer properties. In addition, the reacting electrophilic and nucleophilic sites of the molecule were predicted with the help of molecular electrostatic potential (MEP) surface analysis. Moreover, the intensity of molecular vibrations at different temperatures were examined by applying thermo-chemical analysis. To investigate the solvent effect, the polarizable continuum model was used and the allowed transitions between various HOMO and LUMO levels were found.
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Affiliation(s)
- T Karthick
- Department of Physics, Vivekanandha College for Women, Tiruchengode 637 205, India
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Chitradevi A, Athimoolam S, Bahadur SA, Indumathi S, Perumal S. Ethyl 3-(4-chloro-benzo-yl)-1-(4-chloro-benz-yl)-4-(4-chloro-phen-yl)-2,2-dioxo-3,4,6,7,8,8a-hexa-hydro-1H-pyrrolo-[2,1-c][1,4]thia-zine-1-carboxyl-ate. Acta Crystallogr Sect E Struct Rep Online 2013; 69:o706-7. [PMID: 23723860 PMCID: PMC3648240 DOI: 10.1107/s1600536813009148] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2013] [Accepted: 04/03/2013] [Indexed: 11/10/2022]
Abstract
In the title compound, C30H28Cl3NO5S, the pyrrolidine ring adopts an envelope conformation (with the N atom as the flap) and the thia-zine ring is in a distorted chair conformation. The mol-ecular structure shows three intra-molecular C-H⋯O inter-actions leading to self-associated ring S(6) and two S(7) motifs. In the crystal, the molecules are linked by C-H⋯O and C-H⋯Cl inter-actions. Two R 2 (2)(10) and one R 2 (2)(16) centrosymmetrically related ring motifs are observed in the unit cell and they are connected through C(6) and C(11) chain motifs extending along the b and c axes, respectively.
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Affiliation(s)
- A Chitradevi
- Department of Physics, Sri Subramanya College of Engineering & Technology, Palani 624 615, India
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Karthick T, Balachandran V, Perumal S, Nataraj A. Vibrational (FT-IR and FT-Raman) spectra and quantum chemical studies on the molecular orbital calculations, chemical reactivity and thermodynamic parameters of 2-chloro-5-(trifluoromethyl) aniline. Spectrochim Acta A Mol Biomol Spectrosc 2013; 107:72-81. [PMID: 23416911 DOI: 10.1016/j.saa.2013.01.034] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2012] [Revised: 12/22/2012] [Accepted: 01/11/2013] [Indexed: 06/01/2023]
Abstract
In this work, the vibrational characteristics of 2-chloro-5-(trifluoromethyl) aniline have been investigated and both the experimental and theoretical vibrational data indicate the presence of various functional groups within the title molecule. The influence of chlorine substituent on the vibrational wavenumbers of a molecule in comparison with aniline and trifluoromethyl aniline has been discussed in detail. The density functional theoretical (DFT) computations were performed at the B3LYP/6-31++G(3df,3pd)/6-31G(3df,3pd) levels to derive the optimized geometry, vibrational wavenumbers with IR and Raman intensities. Furthermore, the molecular orbital calculations such as; natural bond orbitals (NBOs) and HOMO-LUMO energy gap and mapped molecular electrostatic potential (MEP) surfaces were also performed with the same level of DFT. The temperature dependence thermodynamic parameters of a molecule were illustrated on the basis of their correlation graphs. The detailed interpretation of the vibrational spectra has been carried out with the aid of potential energy distribution (PED) results obtained from MOLVIB program. The delocalization of electron density in various constituents of the molecule has been discussed with the aid of NBO and HOMO-LUMO energy gap analysis.
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Affiliation(s)
- T Karthick
- Department of Physics, Vivekanandha College for Women, Tiruchengode 637 205, India
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15
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Rajni Swamy V, Müller P, Srinivasan N, Perumal S, Krishnakumar RV. Isomorphous methyl- and chloro-substituted small heterocyclic analogues obeying the chlorine-methyl (Cl-Me) exchange rule. Acta Crystallogr C 2013; 69:412-5. [PMID: 23579718 DOI: 10.1107/s0108270113004812] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2012] [Accepted: 02/19/2013] [Indexed: 11/10/2022] Open
Abstract
The two new isomorphous structures [3-methyl-4-(4-methylphenyl)-1-phenyl-6-trifluoromethyl-1H-pyrazolo[3,4-b]pyridin-5-yl](thiophen-2-yl)methanone, C26H18F3N3OS, (I), and [4-(4-chlorophenyl)-3-methyl-1-phenyl-6-trifluoromethyl-1H-pyrazolo[3,4-b]pyridin-5-yl](thiophen-2-yl)methanone, C25H15ClF3N3OS, (II), are shown to obey the chlorine-methyl exchange rule. Both structures show extensive disorder, treatment of which greatly improves the quality of the description of the structures. In addition, it is worth noting that the presence of extensive disorder may make it difficult to detect the isomorphism automatically during data-mining procedures (such as searches of the Cambridge Structural Database).
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Affiliation(s)
- V Rajni Swamy
- Department of Physics, Thiagarajar College, Madurai 625 009, India
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Rajni Swamy V, Krishnakumar RV, Srinivasan N, Gunasekaran P, Perumal S. 5-Benzoyl-2-(1 H-indol-3-yl)-4-[4-(propan-2-yl)phenyl]-4,5-dihydrofuran-3-carbonitrile. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o3441. [PMID: 23476257 PMCID: PMC3589021 DOI: 10.1107/s1600536812046764] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2012] [Accepted: 11/13/2012] [Indexed: 11/10/2022]
Abstract
In the title compound, C29H24N2O2, the hydrofuran ring is twisted with puckering parameters Q = 0.1553 (16) Å and ϕ = 305.0 (6)°. In the crystal, the graph-set motifs of the interaction pattern are an R22(16) motif involving dimers through N—H⋯N hydrogen bonds across centres of inversion and a C(6) motif through C—H⋯O hydrogen-bond between glide-related molecules. Together, these generate [101] ladder-like chains.
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Abstract
The relativistic behavior of graphene structures, starting from the fundamental building blocks--the poly-aromatic hydrocarbons (PAHs) along with other PAH nanographenes--is studied to quantify any associated intrinsic magnetism in the triplet (T) state and subsequently in the ground singlet (S) state with account of possible S-T mixture induced by spin-orbit coupling (SOC). We employ a first principle quantum chemical-based approach and density functional theory (DFT) for a systematic treatment of the spin-Hamiltonian by considering both the spin-orbit and spin-spin interactions as dependent on different numbers of benzene rings. We assess these relativistic spin-coupling phenomena in terms of splitting parameters which cause magnetic anisotropy in absence of external perturbations. Possible routes for changes in the couplings in terms of doping and defects are also simulated and discussed. Accounting for the artificial character of the broken-symmetry solutions for strong spin polarization of the so-called "singlet open-shell" ground state in zigzag graphene nanoribbons predicted by spin-unrestricted DFT approaches, we interpolate results from more sophisticated methods for the S-T gaps and spin-orbit coupling (SOC) integrals and find that these spin interactions become weak as function of size and increasing decoupling of electrons at the edges. This leads to reduced electron spin-spin interaction and hence almost negligible intrinsic magnetism in the carbon-based PAHs and carbon nanographene fragments. Our results are in agreement with the fact that direct experimental evidence of edge magnetism in pristine graphene has been reported so far. We support the notion that magnetism in graphene only can be ascribed to structural defects or impurities.
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Affiliation(s)
- S Perumal
- KTH Royal Institute of Technology, School of Biotechnolgy, Department of Theoretical Chemistry and Biology, Roslagstullsbacken 15, SE-114 21 Stockholm, Sweden.
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Suresh J, Vishnupriya R, Gunasekaran P, Perumal S, Lakshman PLN. (±)- trans-5-Benzoyl-4-(3-bromophenyl)-2-(1 H-indol-3-yl)-4,5-dihydrofuran-3-carbonitrile. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2397. [PMID: 22904854 PMCID: PMC3414321 DOI: 10.1107/s1600536812030073] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2012] [Accepted: 07/02/2012] [Indexed: 11/10/2022]
Abstract
The furan ring in the title compound, C26H17BrN2O2, adopts a twisted envelope conformation. The molecular structure is stabilized by an intramolecular C—H⋯O interaction which generates an S(6) ring motif. The crystal packing is stabilized by N—H⋯O and C—H⋯Br interactions, generating an R22(16) ring motif and a C(12) linear chain motif, respectively. Weak C—H⋯π bonding is also observed.
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Balachandran V, Karthick T, Perumal S, Nataraj A. Vibrational spectroscopic studies, molecular orbital calculations and chemical reactivity of 6-nitro-m-toluic acid. Spectrochim Acta A Mol Biomol Spectrosc 2012; 92:137-147. [PMID: 22446760 DOI: 10.1016/j.saa.2012.02.048] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2011] [Revised: 01/26/2012] [Accepted: 02/14/2012] [Indexed: 05/31/2023]
Abstract
The potential energy surface scan for the selected dihedral angle of 6-nitro-m-toluic acid (NTA) has been performed to identify stable conformer. The optimized structure parameters and vibrational wavenumbers of stable conformer have been predicted by density functional B3LYP method with 6-311++G(d,p) basis set. The formation of dimer species through carboxylic acid group of the title molecule has also been discussed. The theoretical dimer geometries have been compared with that of monomer and the variations of bond lengths and bond angles upon dimerization were also discussed. Natural bond orbital (NBO) analysis has been performed on both monomer and dimer geometries. The significant changes in occupancies and the energies of bonding and anti-bonding orbitals upon dimerization have been explained in detail. The predicted frontier molecular orbital energies at B3LYP/6-311++G(d,p) method set show that charge transfer occurs within the molecule. The nucleophilic and electrophilic sites obtained from the molecular electrostatic potential (MEP) surface were compared with their derived fitting point charges. The vibrational wavenumbers of NTA affected profusely by the nitro group substitution in comparison to the toluic acid have been interpreted in this work.
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Affiliation(s)
- V Balachandran
- Department of Physics, AA Government Arts College, Musiri, Tiruchirappalli, India.
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Suresh J, Vishnupriya R, Gunasekaran P, Perumal S, Lakshman PLN. (±)-trans-5-Benzoyl-2-(1H-indol-3-yl)-4-phenyl-4,5-dihydro-furan-3-carbonitrile. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o1576. [PMID: 22590433 PMCID: PMC3344671 DOI: 10.1107/s1600536812018430] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2012] [Accepted: 04/25/2012] [Indexed: 05/31/2023]
Abstract
The furan ring in the title compound, C(26)H(18)N(2)O(2), is twisted about the C(H)-C(H) bond. The mol-ecular structure is stabilized by an intra-molecular C-H⋯O inter-action, which generates an S(6) ring motif. The presence of N-H⋯N hydrogen bonds leads to inversion dimers, which are stabilized in the crystal packing by C-H⋯O and C-H⋯π inter-actions, forming layers that stack along the a axis.
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Affiliation(s)
- J. Suresh
- Department of Physics, The Madura College, Madurai 625 011, India
| | - R. Vishnupriya
- Department of Physics, The Madura College, Madurai 625 011, India
| | - P. Gunasekaran
- Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai 625 021, India
| | - S. Perumal
- Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai 625 021, India
| | - P. L. Nilantha Lakshman
- Department of Food Science and Technology, University of Ruhuna, Mapalana, Kamburupitiya 81100, Sri Lanka
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21
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Suresh J, Vishnupriya R, Gunasekaran P, Perumal S, Lakshman PLN. 5-Benzoyl-2-(1 H-indol-3-yl)-4-(4-methylphenyl)-4,5-dihydrofuran-3-carbonitrile. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o1124. [PMID: 22589979 PMCID: PMC3344070 DOI: 10.1107/s1600536812011105] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2012] [Accepted: 03/14/2012] [Indexed: 11/14/2022]
Abstract
The furan ring in the title compound, C27H20N2O2, adopts a twisted conformation about the sp3—sp3 bond. The molecular structure is stabilized by an intramolecular C—H⋯O interaction which generates an S(6) ring motif. The crystal packing is stabilized by N—H⋯O and C—H⋯O interactions generating centrosymmetric R22(18) and C(6) chain motifs, respectively. A weak C—H⋯π interaction is also observed.
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Sweetlin MD, Eapen SM, Perumal S, Ramalingom S. Poly[μ(3)-β-alanine-aqua-μ(4)-sulfato-dilithium]. Acta Crystallogr Sect E Struct Rep Online 2012; 68:m206-7. [PMID: 22346871 PMCID: PMC3274924 DOI: 10.1107/s1600536812002115] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2011] [Accepted: 01/17/2012] [Indexed: 11/10/2022]
Abstract
The title compound, [Li(2)(SO(4))(C(3)H(7)NO(2))(H(2)O)](n), is a coordination polymer in which the β-alanine residues remain in the zwitterionic form. The crystal structure consists of corrugated sheets of [LiO(4)] and [SO(4)] tetra-hedra parallel to (010) with the β-alanine mol-ecules located between the sheets. The two independent Li(+) cations are four-coordinated by O atoms in a distorted tetra-hedral geometry. The crystal structure is formed by stacking of alternate organic and inorganic layers along the a axis. The crystal structure is further stabilized by N-H⋯O hydrogen bonds.
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Karthick T, Balachandran V, Perumal S, Nataraj A. Rotational isomers, vibrational assignments, HOMO–LUMO, NLO properties and molecular electrostatic potential surface of N-(2 bromoethyl) phthalimide. J Mol Struct 2011. [DOI: 10.1016/j.molstruc.2011.08.051] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Karthick T, Balachandran V, Perumal S, Nataraj A. Spectroscopic studies, HOMO–LUMO and NBO calculations on monomer and dimer conformer of 5-nitrosalicylic acid. J Mol Struct 2011. [DOI: 10.1016/j.molstruc.2011.08.050] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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Rose ASJL, Selvarajan P, Perumal S. Growth, structural, spectral, mechanical, thermal and dielectric characterization of phosphoric acid admixtured L-alanine (PLA) single crystals. Spectrochim Acta A Mol Biomol Spectrosc 2011; 81:270-275. [PMID: 21775196 DOI: 10.1016/j.saa.2011.06.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2011] [Revised: 06/06/2011] [Accepted: 06/14/2011] [Indexed: 05/31/2023]
Abstract
Phosphoric acid admixtured L-alanine (PLA) single crystals were grown successfully by solution method with slow evaporation technique at room temperature. Crystals of size 18 mm×12 mm×8 mm have been obtained in 28 days. The grown crystals were colorless and transparent. The solubility of the grown samples has been found out at various temperatures. The lattice parameters of the grown crystals were determined by X-ray diffraction technique. The reflection planes of the sample were confirmed by the powder X-ray diffraction study and diffraction peaks were indexed. Fourier transform infrared (FTIR) studies were used to confirm the presence of various functional groups in the crystals. UV-visible transmittance spectrum was recorded to study the optical transparency of grown crystal. The nonlinear optical (NLO) property of the grown crystal was confirmed by Kurtz-Perry powder technique and a study of its second harmonic generation efficiency in comparison with potassium dihydrogen phosphate (KDP) has been made. The mechanical strength of the crystal was estimated by Vickers hardness test. The grown crystals were subjected to thermo gravimetric and differential thermal analysis (TG/DTA). The dielectric behavior of the sample was also studied.
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Affiliation(s)
- A S J Lucia Rose
- Department of Physics, St. Mary's College, Thoothukudi-628 001, Tamilnadu, India
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26
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Chitradevi A, Athimoolam S, Bahadur SA, Indumathi S, Perumal S. Diethyl 1-benzyl-2,2-dioxo-4-phenyl-3,4,6,7,8,8a-hexahydro-1 H-pyrrolo[2,1- c][1,4]thiazine-1,3-dicarboxylate. Acta Crystallogr Sect E Struct Rep Online 2011; 67:o2268. [PMID: 22058923 PMCID: PMC3200855 DOI: 10.1107/s1600536811031047] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2011] [Accepted: 08/02/2011] [Indexed: 11/28/2022]
Abstract
In the title compound, C26H31NO6S, the five-membered pyrrolidine ring adopts an envelope conformation and the six-membered thiazine ring is in a distorted chair conformation. The crystal packing is stabilized through an intermolecular C—H⋯O interaction, generating inversion-related R22(10) ring motifs.
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Gnanadeepam M, Selvaraj S, Perumal S, Renuga S, Selvaraj S. A Synthetic and Stereochemical Study of 2,6-Diaroyl-3,5-Diaryl-4-Ethyltetrahydro-1,4-Thiazine-1,1-Dioxides. PHOSPHORUS SULFUR 2010. [DOI: 10.1080/10426500210254] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- M. Gnanadeepam
- a Department of Chemistry , Fatima College , Madurai , 625018
| | - S. Selvaraj
- b School of Chemistry , Madurai Kamaraj University , Madurai , 625021
| | - S. Perumal
- b School of Chemistry , Madurai Kamaraj University , Madurai , 625021
| | - S. Renuga
- a Department of Chemistry , Fatima College , Madurai , 625018
| | - S. Selvaraj
- c Drug Development , Isotechnika Inc. , Alberta , Canada , T5S1E8
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Karthikeyan E, Perumal S, Selvaraj S. SYNTHESIS, NMR AND MOLECULAR MODELING STUDY OF 4,9a-DIARYL-9,9a-DIHYDRO 1H-[1,4]THIAZINO[4,3-a][1,3]BENZIMIDAZOLES. PHOSPHORUS SULFUR 2010. [DOI: 10.1080/10426500490494525] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- E. Karthikeyan
- a Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University , Madurai, India
| | - S. Perumal
- a Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University , Madurai, India
| | - S. Selvaraj
- a Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University , Madurai, India
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29
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Gnanadeebam M, Renuga S, Selvaraj S, Perumal S, Dhanabalan A, Hewlins MJE. DIASTEREOSELECTIVE SYNTHESIS OF 2,2′-THIOBIS- AND 2,2′-SULFONYLBIS- (1,3-DIARYLPROP-2-EN-1-ONES)—AN OXIDATIVE CONFIGURATIONAL SWITCH. PHOSPHORUS SULFUR 2010. [DOI: 10.1080/10426500490274637] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- M. Gnanadeebam
- a Department of Chemistry, Fatima College , Madurai, India , 625018
| | - S. Renuga
- a Department of Chemistry, Fatima College , Madurai, India , 625018
| | - S. Selvaraj
- b School of Chemistry, Madurai Kamaraj University , Madurai, India , 625 021
| | - S. Perumal
- b School of Chemistry, Madurai Kamaraj University , Madurai, India , 625 021
| | - A. Dhanabalan
- b School of Chemistry, Madurai Kamaraj University , Madurai, India , 625 021
| | - M. J. E. Hewlins
- c Department of Chemistry, Cardiff University , United Kingdom , CFI 3TB
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Vinosha B, Renuga S, Gnanadeebam M, Perumal S. A Diastereoselective Synthesis of Novel Multifunctional Thianes. PHOSPHORUS SULFUR 2009. [DOI: 10.1080/10426500802625727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- B. Vinosha
- a Department of Chemistry , Fatima College , Madurai, India
| | - S. Renuga
- a Department of Chemistry , Fatima College , Madurai, India
| | - M. Gnanadeebam
- a Department of Chemistry , Fatima College , Madurai, India
| | - S. Perumal
- b School of Chemistry , Madurai Kamaraj University , Madurai, India
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31
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Balamurugan K, Narmadha D, Suresh J, Perumal S, Lakshman PLN. 2-(2,4-Dichlorophenyl)-9-phenyl-2,3-dihydrothieno[3,2- b]quinoline. Acta Crystallogr Sect E Struct Rep Online 2009; 65:o1783. [PMID: 21583489 PMCID: PMC2977236 DOI: 10.1107/s1600536809025380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2009] [Accepted: 07/01/2009] [Indexed: 11/10/2022]
Abstract
In the title compound, C23H15Cl2NS, the quinoline system is almost planar [r.m.s. deviation = 0.013 (2) Å]. The phenyl group is disordered over two positions with site occupancies of 0.55 and 0.45, and is oriented in a nearly perpendicular configuration to the quinoline ring [the dihedral angles between the quinoline ring and the major and minor disordered components of the phenyl ring are 81.8 (2) and 71.6 (2)°, respectively]. The dihydrothiene ring adopts an envelope conformation. The dihedral angle between the chlorophenyl ring and the quinoline system is 79.32 (1)°. In the crystal weak C—H⋯π interactions occur.
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32
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Suresh J, Nithya UC, Kumar RS, Perumal S, Lakshman PLN. 2,10-Dihydroxy-13-methyl-13-azatetracyclo[9.3.1.0 2,10.0 3,8]pentadeca-3(8),4,6-triene-9,15-dione. Acta Crystallogr Sect E Struct Rep Online 2009; 65:o1216. [PMID: 21583085 PMCID: PMC2969762 DOI: 10.1107/s1600536809015785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2009] [Accepted: 04/28/2009] [Indexed: 11/10/2022]
Abstract
In the title compound, C15H15NO4, then-methylpiperidone ring adopts a chair conformation and both five-membered rings adopt a twist conformation. An intramolecular O—H...O hydrogen bond is observed. Inversion-related molecules are linked intoR22(10) dimers by pairs of O—H...O hydrogen bonds. The crystal structure is further stabilized by C—H...O hydrogen bonds.
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Suresh J, Gurunathan K, Kumar RS, Perumal S, Lakshman PLN. 13-Hydroxy-4,16-dimethyl-4,16-diazapentacyclo[12.3.1.0 1,5.0 5,13.0 7,12]octadeca-7(12),8,10-triene-6,18-dione. Acta Crystallogr Sect E Struct Rep Online 2009; 65:o1163-4. [PMID: 21583966 PMCID: PMC2977829 DOI: 10.1107/s1600536809015293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2009] [Accepted: 04/23/2009] [Indexed: 12/03/2022]
Abstract
In the title compound, C18H20N2O3, the N-methylpiperidone ring adopts a chair conformation. The pyrrolidine ring and the five-membered cyclopentane rings adopt envelope conformations. The five-membered ring of the ninhydrin system adopts an envelope conformation with the central C atom deviating by 0.217 (1)Å from the mean plane through the other atoms. The molecular packing is characterized by intermolecular C—H⋯O and intramolecular C—H⋯O and O—H⋯N interactions.
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Suresh J, Kumar RS, Rajapriya A, Perumal S, Lakshman PLN. 1-Benzyl-4',5'-diphenyl-piperidine-3-spiro-3'-pyrrolidine-2'-spiro-3''-indoline-4,2''-dione. Acta Crystallogr Sect E Struct Rep Online 2008; 65:o147-8. [PMID: 21581605 PMCID: PMC2968062 DOI: 10.1107/s160053680804141x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2008] [Accepted: 12/07/2008] [Indexed: 11/26/2022]
Abstract
The asymmetric unit of the title compound, C34H31N3O2, consists of two independent molecules which differ slightly in the orientations of the phenyl rings with respect to the pyrrolidine ring. In both molecules, the piperidin-4-one ring adopts a chair conformation, whereas the pyrrolidine ring adopts an envelope conformation in one of the molecules and a twisted conformation in the other. An intramolecular C—H⋯O hydrogen bond is observed. The crystal packing is stabilized by intermolecular N—H⋯O hydrogen bonds and C—H⋯π interactions.
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Ravindran G, Muthusubramanian S, Perumal S. A convenient one pot synthesis of highly substituted piperidines through a Michael addition-aldol cyclization sequence. ARKIVOC 2008. [DOI: 10.3998/ark.5550190.0009.d07] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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Gayathri D, Velmurugan D, Kumar RR, Perumal S, Ravikumar K. 3-[(E)-4-Methoxy-benzyl-idene]-1-methyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online 2008; 64:o552. [PMID: 21201895 PMCID: PMC2960746 DOI: 10.1107/s1600536808003280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2008] [Accepted: 01/30/2008] [Indexed: 05/26/2023]
Abstract
The piperidone ring of the title compound, C(14)H(17)NO(2), adopts a half-chair conformation. The crystal packing is stabilized by inter-molecular C-H⋯O inter-actions, which generate a C(8) chain running along the b axis.
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Gayathri D, Velmurugan D, Kumar RR, Perumal S, Ravikumar K. 3-[(E)-2,4-Dichloro-benzyl-idene]-1-methyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online 2008; 64:o520. [PMID: 21201539 PMCID: PMC2960166 DOI: 10.1107/s1600536808002286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2008] [Accepted: 01/22/2008] [Indexed: 11/24/2022]
Abstract
The piperidine ring of the title compound, C13H13Cl2NO, adopts an envelope conformation. Intermolecular C—H⋯O interactions link the molecules into a C(7) chain running along the b axis.
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Gayathri D, Velmurugan D, Ranjith Kumar R, Perumal S, Ravikumar K. 3-(4-Chloro-phen-yl)-7-methyl-4-(4-methyl-phen-yl)-1-oxa-2,7-diaza-spiro-[4.5]dec-2-en-10-one. Acta Crystallogr Sect E Struct Rep Online 2008; 64:o398. [PMID: 21201426 PMCID: PMC2960192 DOI: 10.1107/s1600536807068717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2007] [Accepted: 12/29/2007] [Indexed: 12/02/2022]
Abstract
In the title compound, C21H21ClN2O2, the dihydroisoxazole ring adopts an envelope conformation and the piperidinone ring is in a chair conformation. The dihedral angle between the two benzene rings is 84.2 (1)°. The crystal used was an inversion twin.
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Malathy A, Kumar RS, Perumal S, Suresh J, Lakshman N. (1R,4R,5R)-1,3,4-Triphenyl-7-[(R)-1-phenyl-ethyl]-2-oxa-3,7-diaza-spiro-[4.5]decan-10-one. Acta Crystallogr Sect E Struct Rep Online 2007; 64:o343. [PMID: 21200905 PMCID: PMC2915384 DOI: 10.1107/s1600536807067256] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2007] [Accepted: 12/17/2007] [Indexed: 11/24/2022]
Abstract
In the title compound, C33H32N2O2, the polysubstituted piperidine ring adopts a chair conformation. The isoxazolidine ring is in an envelope conformation. In the crystal structure, intra- and intermolecular C—H⋯π interactions involving the phenyl rings are observed.
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Athimoolam S, Radha VA, Bahadur SA, Kumar RR, Perumal S. 1'-Methyl-4'-(1-naphth-yl)-3''-(1-naphthyl-methyl-ene)acenaphthene-1-spiro-2'-pyrrolidine-3'-spiro-1''-cyclo-hexane-2,2''-dione. Acta Crystallogr Sect E Struct Rep Online 2007; 64:o95-o96. [PMID: 21200972 PMCID: PMC2915050 DOI: 10.1107/s1600536807061387] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2007] [Accepted: 11/20/2007] [Indexed: 05/30/2023]
Abstract
In the title compound, C(42)H(33)NO(2), the six-membered cyclo-hexa-none ring adopts a slightly distorted chair conformation and the five-membered pyrrolidine ring is in an envelope conformation. The mol-ecular structure features four intra-molecular C-H⋯O inter-actions and an intra-molecular C-H⋯π inter-action. Furthermore, the crystal packing is stabilized by an inter-molecular C-H⋯O and three inter-molecular C-H⋯π inter-actions.
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Affiliation(s)
- S. Athimoolam
- Department of Physics, Kalasalingam University, Anand Nagar, Krishnan Koil 626 190, India
| | - V. Anu Radha
- Department of Physics, Kalasalingam University, Anand Nagar, Krishnan Koil 626 190, India
| | - S. Asath Bahadur
- Department of Physics, Kalasalingam University, Anand Nagar, Krishnan Koil 626 190, India
| | - R. Ranjith Kumar
- Department of Organic Chemistry, Madurai Kamaraj University, Madurai 625 021, India
| | - S. Perumal
- Department of Organic Chemistry, Madurai Kamaraj University, Madurai 625 021, India
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41
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Mahalakshmi S, Kumar RS, Perumal S, Sivakumar V, Suresh J. (5S,6S,10R)-10-(2,4-Dichloro-phen-yl)-14-[(E)-(2,4-dichloro-phen-yl)methyl-idene]-3,9-diphenyl-12-[(R)-1-phenyl-ethyl]-1,4,7-trioxa-2,8,12-triaza-dispiro-[4.0.4.4]tetra-deca-2,8-diene. Acta Crystallogr Sect E Struct Rep Online 2007; 64:o199-200. [PMID: 21200764 PMCID: PMC2915262 DOI: 10.1107/s1600536807063477] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2007] [Accepted: 11/26/2007] [Indexed: 11/10/2022]
Abstract
The asymmetric unit of the title compound, C(41)H(31)Cl(4)N(3)O(3), contains two independent mol-ecules with almost identical geometries. The piperidine ring adopts a chair conformation in both mol-ecules, and the dihydro-isoxazole rings adopt envelope conformations. The crystal structure is stabilized by C-H⋯N hydrogen bonds and C-H⋯π inter-actions.
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42
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Suresh J, Suresh Kumar R, Perumal S, Natarajan S. 1'-Methylcyclooctane-1-spiro-3'-pyrrolidine-2'-spiro-3''-indoline-2,2''-dione and 1,1'-dimethylpiperidine-3-spiro-3'-pyrrolidine-2'-spiro-3''-indoline-2'',4-dione. Acta Crystallogr C 2007; 63:o538-42. [PMID: 17762127 DOI: 10.1107/s0108270107035779] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2007] [Accepted: 07/23/2007] [Indexed: 11/10/2022] Open
Abstract
In both title compounds, C(19)H(24)N(2)O(2), (I), and C(17)H(21)N(3)O(2), (II), respectively, there are two molecules in the asymmetric unit and the pyrrolidine rings adopt envelope conformations. The conformations of the cyclooctane [in (I)] and 1-methylpiperidone [in (II)] rings are boat-chair and chair, respectively. The indolin-2-one group is almost perpendicular to the pyrrolidine ring. Intermolecular C-H...O, N-H...O and N-H...N interactions provide stability to the structures.
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Affiliation(s)
- J Suresh
- Department of Physics, Madura College, Madurai 625 011, India
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43
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Suresh J, Suresh Kumar R, Perumal S, Natarajan S. (R)-3,5-Bis[(E)-benzylidene]-1-(1-phenylethyl)piperidin-4-one, 3,5-bis[(E)-4-chlorobenzylidene]-1-[(R)-1-phenylethyl]piperidin-4-one and 3,5-bis[(E)-2-chlorobenzylidene]-1-[(R)-1-phenylethyl]piperidin-4-one. Acta Crystallogr C 2007; 63:o315-8. [PMID: 17478922 DOI: 10.1107/s0108270107011626] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2007] [Accepted: 03/12/2007] [Indexed: 11/10/2022] Open
Abstract
Polysubstituted piperidones, viz. the title compounds, C(27)H(25)NO, (I), C(27)H(23)Cl(2)NO, (II), and C(27)H(23)Cl(2)NO, (III), adopt sofa conformations. The molecular packing in (I) and (II) is a result of van der Waals interactions, whereas in (III), a C-H...O interaction is also found.
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Affiliation(s)
- J Suresh
- Department of Physics, The Madura College, Madurai 625 011, India
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45
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Suresh J, Suresh Kumar R, Perumal S, Mostad A, Natarajan S. Ethyl 4-hydroxy-2,6-diphenyl-5-(phenylsulfanyl)pyridine-3-carboxylate and ethyl 2,6-bis(4-fluorophenyl)-4-hydroxy-5-(4-methylphenylsulfanyl)pyridine-3-carboxylate: supramolecular aggregation through C—H...O, C—H...F and C—H...π interactions. Acta Crystallogr C 2007; 63:o141-4. [PMID: 17284810 DOI: 10.1107/s0108270107000224] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2006] [Accepted: 01/03/2007] [Indexed: 05/13/2023] Open
Affiliation(s)
- J Suresh
- Department of Physics, The Madura College, Madurai 625 011, India
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46
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Ravindran G, Muthusubramanian S, Selvaraj S, Perumal S. A Simple and Efficient One-Step Synthesis of 2,4,10a-Triaryl-1,10a-Dihydro-2H-Pyrazino[2,1-b][1,3] Benzothiazoles Catalyzed by p-Toluene Sulfonic Acid. PHOSPHORUS SULFUR 2007. [DOI: 10.1080/10426500601013190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- G. Ravindran
- a Department of Organic Chemistry, School of Chemistry , Madurai Kamaraj University , Madurai , India
| | - S. Muthusubramanian
- a Department of Organic Chemistry, School of Chemistry , Madurai Kamaraj University , Madurai , India
| | - S. Selvaraj
- a Department of Organic Chemistry, School of Chemistry , Madurai Kamaraj University , Madurai , India
| | - S. Perumal
- a Department of Organic Chemistry, School of Chemistry , Madurai Kamaraj University , Madurai , India
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Bhavani N, Perumal S, Banureka R. Stereoselective synthesis and stereochemistry of r-2-alkoxycarbonyl-c-3-o-substituted phenyl-1,4-thiazane 1,1-dioxides. CAN J CHEM 2005. [DOI: 10.1139/v05-020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
r-2-Alkoxycarbonyl-c-3-aryl-1,4-thiazane 1,1-dioxides were obtained as the stereoselective product, when the aldehyde used was o-substituted benzaldehyde while the p-substituted benzaldehydes gave a trans product. The relative configuration of the adjacent alkoxycarbonyl and aryl groups was assigned from the vicinal coupling constant, 3J = 10.6 Hz in the trans isomer and 3.2 Hz in the cis isomer, and from the multiplicity pattern, i.e., a doublet for the H-2 proton of the trans isomer and a triplet for the H-2 proton of the cis isomer. The unusual, large long-range coupling (4J = 2.8 Hz) because of the "W" arrangement between H-2e and H-6e across the ring type was very useful for confirming the cis configuration and chair conformation of the isomer. The various 1H and 13C NMR assignments were made with the help of 1H1H COSY, 1H13C COSY, HMBC, and NOESY spectral analyses.Key words: 1H and 13C NMR, 1H1H COSY, 1H13C COSY, HMBC, NOESY, stereoselectivity, 1,4-thiazane.
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50
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Srinivasan M, Perumal S, Selvaraj S. A(1,3)-strain mediated epimerization of 2e,3e,5e,6e-tetraarylpiperidin-4-one oximes. Magn Reson Chem 2004; 42:1056-1059. [PMID: 15386544 DOI: 10.1002/mrc.1480] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
A series of tri- and tetraarylpiperidin-4-one oximes were synthesized from 2e,3e,6e-tri- and 2e,3e,5e,6e-tetraarylpiperidin-4-ones, respectively. In the case of the latter compounds, oximation is accompanied by epimerization at C-5 to avoid the A(1,3)-strain between the oxime OH group and the 5e-aryl ring of the initially formed oxime resulting in 2e,3e,5a,6e-tetraarylpiperidin-4-one oximes. 1H, 13C and 2D NMR spectroscopic data were employed to characterize and investigate the stereochemistry of these compounds.
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Affiliation(s)
- M Srinivasan
- Department of Organic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai 625 021, India
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