Efficient gene editing in induced pluripotent stem cells enabled by an inducible adenine base editor with tunable expression

The preferred method for disease modeling using induced pluripotent stem cells (iPSCs) is to generate isogenic cell lines by correcting or introducing pathogenic mutations. Base editing enables the precise installation of point mutations at specific genomic locations without the need for deleterious double-strand breaks used in the CRISPR-Cas9 gene editing methods. We created a bulk population of iPSCs that homogeneously express ABE8e adenine base editor enzyme under a doxycycline-inducible expression system at the AAVS1 safe harbor locus. These cells enabled fast, efficient and inducible gene editing at targeted genomic regions, eliminating the need for single-cell cloning and screening to identify those with homozygous mutations. We could achieve multiplex genomic editing by creating homozygous mutations in very high efficiencies at four independent genomic loci simultaneously in AAVS1-iABE8e iPSCs, which is highly challenging with previously described methods. The inducible ABE8e expression system allows editing of the genes of interest within a specific time window, enabling temporal control of gene editing to study the cell or lineage-specific functions of genes and their molecular pathways. In summary, the inducible ABE8e system provides a fast, efficient and versatile gene-editing tool for disease modeling and functional genomic studies.

Establishment and characterization of CSCRi006-A: an induced pluripotent stem cell line generated from a patient with Diamond-Blackfan Anemia (DBA) carrying ribosomal protein S19 (RPS19) mutation

Diamond-Blackfan anemia (DBA) is a congenital hypoplastic anemia characterized by ineffective erythropoiesis. DBA is majorly caused by mutations in the ribosomal protein (RP) genes (Gadhiya and Wills in Diamond-Blackfan Anemia, https://www.statpearls.com/ ; 2023). A suitable disease model that yields a continuous supply of erythroid cells is required to study disease pathogenesis and drug discovery. Toward this, we reprogrammed dermal fibroblasts from a DBA patient with a heterozygous mutation c.22-23delAG in the RPS19 gene identified through exome sequencing. To generate induced pluripotent stem cells (iPSCs), we induced episomal expression of the reprogramming factors OTC3/4, L-MYC, LIN28, SOX2, and KLF4, and a p53 shRNA2. The DBA-iPSC line CSCRi006-A generated during this study was extensively characterized for its pluripotency and genome stability. The clone retained normal karyotype and showed high expression levels of pluripotency markers, OCT4, NANOG, SOX2, TRA-I-60, TRA-I-81, and SSEA4. It could differentiate into cells originating from all three germ cell layers, as identified by immunostaining for SOX17 (endoderm), Brachyury (mesoderm), and PAX6 (ectoderm). IPSCs provide a renewable source of cells for in vitro disease modeling. CSCRi006-A, a thoroughly characterized iPSC line carrying heterozygous RPS19 c.22-23delAG mutation, is a valuable cell line for the disease modeling of DBA. This iPSC line can be differentiated into different blood cell types to study the mechanisms of disease development and identify potential treatments.

Integrated approach of photo-assisted electrochemical oxidation and sequential biodegradation of textile effluent

Synthetic azo dyes are extensively used in the textile industries, which are being released as textile effluent into the environment presence of azo dyes in the environment is great environmental concern therefore treatment of textile effluent is crucial for proper release of the effluent into the environment. Electrochemical oxidation (EO) is extensively used in the degradation of pollutants because of its high efficiency. In this study, photo-assisted electrooxidation (PEO) followed by biodegradation of the textile effluent was evaluated. The pretreatment of textile effluent was conducted by EO and PEO in a tubular flow cell with TiO₂-Ti/IrO₂-RuO₂ anode and titanium cathode under different current densities (10, 15, and 20 mA cm^-2). The chemical oxygen demand level reduced from 3150 mg L^-1 to 1300 and 600 mg L^-1under EO and PEO, respectively. Furthermore, biodegradation of EO and PEO pretreated textile effluent shows reduction in chemical oxygen demand (COD) from 1300 mg L^-1 to 900 mg L^-1and 600 mg L^-1to 110 mg L^-1, respectively. The most abundant genera were identified as Acetobacter, Achromobacter, Acidaminococcus, Actinomyces, and Acetomicrobium from the textile effluent. This study suggests that an integrated approach of PEO and subsequent biodegradation might be an effective and eco-friendly method for the degradation of textile effluent.

Biomedical and Textile Applications of Alternanthera sessilis Leaf Extract Mediated Synthesis of Colloidal Silver Nanoparticle

The aqueous extract of Alternanthera sessilis (As) acts as the precursors for the quick reduction of silver ions, which leads to the formation of silver nanoparticles. In the agar, well diffusion method of the Klebsiella pneumoniae shows the minimal inhibitory concentration of 12 mm against A. sessilis mediated silver nanoparticles (As-AgNPs) at 60 µg/mL concentration. Fabric treated with novel AS-AgNPs is tested against the K. pneumoniae and shows an inhibitory action of 12 mm with mixed cotton that determines the antimicrobial efficacy of the fabrics. Uv- visible spectrophotometer was performed, showing a surface plasmon resonance peak at 450 nm cm^-1. FTIR shows the vibration and the infrared radiation at a specific wavelength of 500-4000 cm^-1. The HR-TEM analysis showed the presence of black-white crystalline, spherical-shaped As-AgNPs embedded on the fabrics range of 15 nm-40 nm. In the scanning electron microscope, the presence of small ball-shaped As-AgNPs embedded on the fabrics at a voltage of 30 KV was found with a magnification of 578X. EDAX was performed in which the nanoparticles show a peak of 2.6-3.9 KeV, and it also reveals the presence of the composition, distribution, and elemental mapping of the nanoparticles. The cytotoxic activity of synthesized nanosilver was carried out against L929 cell lines, which show cell viability at a concentration of 2.5 µg mL^-1. Cell proliferation assay shows no cytotoxicity against L929 cell lines for 24 h. In this study, the green synthesis of silver nanoparticles from A. sessilis appears to be a cheap, eco-friendly, and alternative approach for curing infectious ulcers on the floor of the stratum corneum. Nanotechnology conjoined with herbal therapeutics provides a promising solution for wound management.

One-pot synthesis of bismuth yttrium tungstate nanosheet decorated 3D-BiOBr nanoflower heterostructure with enhanced visible light photocatalytic activity

A visible light driven BiOBr/Bi_xY_1-xWO₆ nanocomposite photocatalyst of various compositions are prepared by the addition of different amounts of KBr (0.5, 1.0, 1.5, 2.0 mmol) in Bi_xY_1-xWO₆ by a one-pot hydrothermal method. Furthermore, the photocatalytic properties of the as-prepared materials are analyzed by the decomposition of methylene blue under visible light illumination. In particular, the BiOBr/Bi_xY_1-xWO₆ nanocomposite prepared by taking 1.5 mmol of KBr present a superior photocatalytic ability (78.3%) with the rate constant value 0.016 min^-1, a low bandgap (E_g = 2.51 eV) as well as photoluminescence emission intensity than other photocatalysts prepared in this study. The radical scavenging studies revealed that OH and h⁺ performed an imperative role in the decomposition of methylene blue. Furthermore, the optimized photocatalyst is stable even after four cycles, which exposes the excellent photostability and reusability properties of the photocatalyst. In addition, a plausible mechanism of decomposition of methylene blue under visible light irradiation is also proposed.

A deep learning model based anomalous behavior detection for supporting verifiable access control scheme in cloud servers

Due to the growth of Big Data (BD) storage and access in cloud computing infrastructure, the detection of anomalies for Cloud Servers (CSs) is essential to ensure data confidentiality. Over the past decades, different security systems have been designed based on various methods like encryption, Access Policy (AP) control schemes, signcryption and so on. Among many security systems, a new Improved NTRU (INTRU) decryption based on the AP strategy has been suggested to secure the BD processed by the CSs. Also, the shared secret data was authenticated to defend the clients from anomalies in the cloud. But, the AP upgrade must not degrade the confidentiality of storing information, reveal trust in the CS or cause any different security challenges. It is not considered that such security challenges occur when the data owner shares its data with many CSs. Hence in this article, an INTRU with Detecting Anomalous in CS (INTRU-DACS) system is proposed that employs a deep learning-based Anomaly Detection System (ADS) to handle and secure the BD stored in the CSs. The main goal of this method is to effectively identify the abnormalities in the real world by the conduct utilization, i.e., the System Call Identifier Sequences (SCISs) created from CSs in which these conducts are associated with BD. Initially, effective data summarization is constructed via different feature states to analyze the SCISs of specific durations. After that, an anomaly identification algorithm is proposed to train and test the streaming of raw SC sequences. This observable SCs execution task of CSs is gathered from log files. The variations of such SCISs having a specified duration are random for usual and unusual sequences. So, the fact of current normal and abnormal services is recognized regarding their SCISs. Such normal and abnormal behavioral states are learned from Convolutional Neural Network-Hidden Markov Model (CNNHMM) classifier to identify the anomalies in CSs. But, it is still a challenging process because of the patterns of usual and unusual events. The performance is not effective since it models only the conduct of a huge number of SCISs created from a single CS. As a result, a Secure Access Control Scheme with DACS (SACS-DACS) system is proposed in which a Multidimensional Feature Misbehavior Server Detection method (MFMSD) is introduced for detecting anomalies in multiple CSs. In this method, large-scale SCISs of multiple CSs are extracted, including different features such as network traffic sequence features, CPU energy usage and memory usage from host logs. These extracted multidimensional features are fed to the CNNHMM that identifies the anomalies and maximizes the detection accuracy. At last, the simulation results demonstrate the effectiveness of the SACS-DACS and INTRU-DACS as compared to the INTRU.

Anticancer and Cytotoxicity Activity of Native and Modified Black Rice Flour on Colon Cancer Cell Lines

This study is intended to evaluate the cytotoxicity of native and dual-modified black rice flour against the colon cancer cell line (HCT116) and mouse embryo cell line (3T3-L1) by using the MTT assay. The modification techniques applied to prepare rice flour samples were enzymatic modification and heat moisture treatment. In this study, the IC50 of native black rice flour and modified black rice flour was 255.78 µg/mL and 340.85 µg/mL, respectively. The result confirms that the native black rice flour has significant cytotoxic and anticancer potential against human colon cancer cells. In addition, the IC50 of native black rice flour and modified black rice flour on the 3T3-L1 cell line was found to be 345.96 µg/mL and 1106.94 µg/mL, respectively. The results showed that the native black rice flour had weak cytotoxicity, and modified black rice flour was nontoxic in both the cell lines. The active component of phytochemicals present in black rice flour has a potential role in preventing colon cancer.

Fabrication of novel AgVO3/BiOI nanocomposite photocatalyst with photoelectrochemical activity towards the degradation of Rhodamine B under visible light irradiation

In the present work, a visible light driven AgVO₃/BiOI nanocomposite photocatalyst with different wt % (1, 2, 3) of AgVO₃ was fabricated by using facile hydrothermal method. Further, the nanocomposite was characterized by FT-IR, XRD, SEM, TEM, EDS, UV-vis DRS, photoluminescence and photoelectrochemical studies. The structural characterization showed nanorods on nanosheet surface. Among different AgVO₃ loaded samples, the photocatalytic efficiency of 1 wt % AgVO₃/BiOI nanocomposite was found to be comparatively higher than the pure BiOI and AgVO₃. The photodegradation rate constant values of pure BiOI, AgVO₃ and 1, 2, 3 wt % AgVO₃/BiOI nanocomposites are 0.006, 0.0033, 0.0255, 0.01575, 0.0116 min^-1 respectively. This enhanced photocatalytic activity was due to the increasing visible light absorption ability and efficient separation of the charge carriers. Thereby, the 1 wt % AgVO₃/BiOI nanocomposite photocatalyst exhibited increased photodegradation activity, photostability and recyclability characteristics. The radical trapping experiment confirmed the role of OH and h⁺ in the photocatalytic degradation of RhB. Based on this, the probable mechanism of degradation of RhB under visible light irradiation has also been proposed. Hence, we believe it could be a promising material that can be employed for the photodegradation of organic pollutants present in wastewater.

Optimization of quorum quenching mediated bacterial attenuation of Solanum torvum root extract by response surface modelling through Box-Behnken approach

The present study was intended to optimize the quorum sensing inhibitory action of Solanum torvum root extract against Chromobacterium violaceum. Factors such as bacterial density, frequency of administration and concentration of extract were analysed. Plant samples were collected from Thrissur District, Kerala, India. Response surface modelling of factors by Box-Behnken approach was employed for optimizing quorum quenching activity of extract. The adequacy of mathematical model was verified by ANOVA and Cook's distance table. Results revealed that quorum quenching property of Solanum torvum root extract is highly influenced by variables studied whereas maximum activity was found during administration of 300 µg/ml extract thrice in a day. It was also understood that extract does not possess any bactericidal activity wherein it only silence its quorum sensing mediated functions. This observations can be further used in quorum quenching studies.

Quorum sensing intervened bacterial signaling: Pursuit of its cognizance and repression

Bacteria communicate within a system by means of a density dependent mechanism known as quorum sensing which regulate the metabolic and behavioral activities of a bacterial community. This sort of interaction occurs through a dialect of chemical signals called as autoinducers synthesized by bacteria. Bacterial quorum sensing occurs through various complex pathways depending upon specious diversity. Therefore the cognizance of quorum sensing mechanism will enable the regulation and thereby constrain bacterial communication. Inhibition strategies of quorum sensing are collectively called as quorum quenching; through which bacteria are incapacitated of its interaction with each other. Many virulence mechanism such as sporulation, biofilm formation, toxin production can be blocked by quorum quenching. Usually quorum quenching mechanisms can be broadly classified into enzymatic methods and non-enzymatic methods. Substantial understanding of bacterial communication and its inhibition enhances the development of novel antibacterial therapeutic drugs. In this review we have discussed the types and mechanisms of quorum sensing and various methods to inhibit and regulate density dependent bacterial communication.

Unusual Case of Acquired Capillary Hemangioma of the Eyelid in an Adult

Acquired capillary hemangioma of the eyelid is very uncommon in adults. To our knowledge, only eight such cases have been reported in the literature till date. We report the case of a 25-year-old female with acquired capillary hemangioma of the left lower eyelid treated by cutting diathermy followed by reconstruction of the cutaneous and cartilaginous defect. This patient had a history of a similar lesion in the left malar region treated 5 years back. This case is being presented to highlight the occurrence of such lesions in an adult and to discuss the dilemmas in the diagnosis and management.