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Siriwongsup S, Schmoker AM, Ficarro SB, Marto JA, Kim J. Bioorthogonally activated reactive species for target identification. Chem 2024; 10:1306-1315. [PMID: 38617077 PMCID: PMC11008434 DOI: 10.1016/j.chempr.2024.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
A target identification platform derived from the bioorthogonal activation of reactive species is described. We explore the reactivity of halogenated enamine N-oxides and report that the previously undisclosed α,γ-halogenated enamine N-oxides can be reduced biooorthogonally by diboron reagents to produce highly electrophilic α,β-unsaturated haloiminium ions suitable for labeling a range of amino acid residues on proteins in a 1,2- or 1,4-fashion. Affinity labeling reagents bearing this motif enable ligand-directed protein modification and afford highly sensitive and selective target identification in unbiased chemoproteomics experiments. Target identification is supported in both cell lysate and live cells.
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Affiliation(s)
- Surached Siriwongsup
- Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
- Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, United States
| | - Anna M. Schmoker
- Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
| | - Scott B. Ficarro
- Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
- Department of Pathology, Brigham and Women’s Hospital, Harvard Medical School, Boston, Massachusetts 02115, United States
- Blais Proteomics Center, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
- Center for Emergent Drug Targets, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
| | - Jarrod A. Marto
- Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
- Department of Pathology, Brigham and Women’s Hospital, Harvard Medical School, Boston, Massachusetts 02115, United States
- Blais Proteomics Center, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
- Center for Emergent Drug Targets, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
| | - Justin Kim
- Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, United States
- Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, United States
- Lead Contact
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Kattamuri PV, Bhakta U, Siriwongsup S, Kwon DH, Alemany LB, Yousufuddin M, Ess DH, Kürti L. Synthesis of Structurally Diverse 3-, 4-, 5-, and 6-Membered Heterocycles from Diisopropyl Iminomalonates and Soft C-Nucleophiles. J Org Chem 2019; 84:7066-7099. [PMID: 31009563 PMCID: PMC7879484 DOI: 10.1021/acs.joc.9b00681] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Herein, we present a general synthetic strategy for the preparation of 3-, 4-, 5-, and 6-membered heterocyclic unnatural amino acid derivatives by exploiting facile Mannich-type reactions between readily available N-alkyl- and N-aryl-substituted diisopropyl iminomalonates and a wide range of soft anionic C-nucleophiles without using any catalyst or additive. Fully substituted aziridines were obtained in a single step when enolates of α-bromo esters were employed as nucleophiles. Enantiomerically enriched azetidines, γ-lactones, and tetrahydroquinolines were obtained via a two-step catalytic asymmetric reduction and cyclization sequence from ketone enolate-derived adducts. Finally, highly substituted γ-lactams were prepared in one pot from adducts obtained using acetonitrile-derived carbanions. Overall, this work clearly demonstrates the utility of iminomalonates as highly versatile building blocks for the practical and scalable synthesis of structurally diverse heterocycles.
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Affiliation(s)
- Padmanabha V. Kattamuri
- Department of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
| | - Urmibhusan Bhakta
- Department of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
| | - Surached Siriwongsup
- Department of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
| | - Doo-Hyun Kwon
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Lawrence B. Alemany
- Department of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
- Shared Equipment Authority, Rice University, 6100 Main Street, Houston, Texas 77005, United States
| | - Muhammed Yousufuddin
- Life and Health Sciences Department, University of North Texas at Dallas, Dallas, Texas 75241, United States
| | - Daniel H. Ess
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - László Kürti
- Department of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
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Kattamuri PV, Yin J, Siriwongsup S, Kwon DH, Ess DH, Li Q, Li G, Yousufuddin M, Richardson PF, Sutton SC, Kürti L. Correction to "Practical Singly and Doubly Electrophilic Aminating Agents: A New, More Sustainable Platform for Carbon-Nitrogen Bond Formation". J Am Chem Soc 2019; 141:3315. [PMID: 30724562 DOI: 10.1021/jacs.9b00398] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Kattamuri PV, Yin J, Siriwongsup S, Kwon DH, Ess DH, Li Q, Li G, Yousufuddin M, Richardson PF, Sutton SC, Kürti L. Practical Singly and Doubly Electrophilic Aminating Agents: A New, More Sustainable Platform for Carbon–Nitrogen Bond Formation. J Am Chem Soc 2017. [DOI: 10.1021/jacs.7b05279] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Padmanabha V. Kattamuri
- Department
of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
- Institute of Chemistry & BioMedical Sciences, Collaborative Innovation Center of Chemistry for Life Sciences, Nanjing University, Nanjing, 210093, P. R. China
| | - Jun Yin
- Department
of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
| | - Surached Siriwongsup
- Department
of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
| | - Doo-Hyun Kwon
- Department
of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Daniel H. Ess
- Department
of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Qun Li
- Institute of Chemistry & BioMedical Sciences, Collaborative Innovation Center of Chemistry for Life Sciences, Nanjing University, Nanjing, 210093, P. R. China
| | - Guigen Li
- Institute of Chemistry & BioMedical Sciences, Collaborative Innovation Center of Chemistry for Life Sciences, Nanjing University, Nanjing, 210093, P. R. China
- Department
of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Muhammed Yousufuddin
- Life
and Health Sciences Department, University of North Texas at Dallas, Dallas, Texas 75241, United States
| | - Paul F. Richardson
- Medicinal
Sciences, Pfizer Worldwide Research and Development, 10770 Science
Center Drive, San Diego, California 92121, United States
| | - Scott C. Sutton
- Medicinal
Sciences, Pfizer Worldwide Research and Development, 10770 Science
Center Drive, San Diego, California 92121, United States
| | - László Kürti
- Department
of Chemistry, Rice University, BioScience Research Collaborative, Houston, Texas 77005, United States
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