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Chemidlin Prévost-Bouré N, Karimi B, Sadet-Bourgeteau S, Djemiel C, Brie M, Dumont J, Campedelli M, Nowak V, Guyot P, Letourneur C, Manneville V, Gillet F, Bouton Y. Microbial transfers from permanent grassland ecosystems to milk in dairy farms in the Comté cheese area. Sci Rep 2021; 11:18144. [PMID: 34518581 PMCID: PMC8438085 DOI: 10.1038/s41598-021-97373-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 08/17/2021] [Indexed: 01/07/2023] Open
Abstract
The specificity of dairy Protected Designation of Origin (PDO) products is related to their “terroir” of production. This relationship needs better understanding for efficient and sustainable productions preserving the agroecological equilibrium of agroecosystems, especially grasslands. Specificity of PDO Comté cheese was related to the diversity of natural raw milk bacterial communities, but their sources need to be determined. It is hypothesized that raw milk indigenous microbial communities may originate from permanent grazed grasslands by the intermediate of dairy cows according to the sequence soil–phyllosphere–teat–milk. This hypothesis was evaluated on a 44 dairy farms network across PDO Comté cheese area by characterizing prokaryotic and fungal communities of these compartments by metabarcoding analysis (16S rRNA gene: V3–V4 region, 18S rRNA gene: V7–V8 region). Strong and significant links were highlighted between the four compartments through a network analysis (0.34 < r < 0.58), and were modulated by soil pH, plant diversity and elevation; but also by farming practices: organic fertilization levels, cattle intensity and cow-teat care. This causal relationship suggests that microbial diversity of agroecosystems is a key player in relating a PDO product to its “terroir”; this under the dependency of farming practices. Altogether, this makes the “terroir” even more local and needs to be considered for production sustainability.
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Affiliation(s)
- N Chemidlin Prévost-Bouré
- UMR 1347 Agroécologie - AgroSup Dijon - INRAE - Université Bourgogne - Université Bourgogne Franche-Comté, 21000, Dijon, France.
| | - B Karimi
- UMR 1347 Agroécologie - AgroSup Dijon - INRAE - Université Bourgogne - Université Bourgogne Franche-Comté, 21000, Dijon, France
| | - S Sadet-Bourgeteau
- UMR 1347 Agroécologie - AgroSup Dijon - INRAE - Université Bourgogne - Université Bourgogne Franche-Comté, 21000, Dijon, France
| | - C Djemiel
- UMR 1347 Agroécologie - AgroSup Dijon - INRAE - Université Bourgogne - Université Bourgogne Franche-Comté, 21000, Dijon, France
| | - M Brie
- AgroSup Dijon, 26 boulevard du Dr Petitjean, 21000, Dijon, France
| | - J Dumont
- AgroSup Dijon, 26 boulevard du Dr Petitjean, 21000, Dijon, France
| | - M Campedelli
- AgroSup Dijon, 26 boulevard du Dr Petitjean, 21000, Dijon, France
| | - V Nowak
- UMR 1347 Agroécologie - AgroSup Dijon - INRAE - Université Bourgogne - Université Bourgogne Franche-Comté, 21000, Dijon, France
| | - P Guyot
- Comité Interprofessionnel de Gestion du Comté - Unité R&D, Bâtiment INRAE URTAL, 39800, Poligny, France
| | - C Letourneur
- Comité Interprofessionnel de Gestion du Comté - Unité R&D, Bâtiment INRAE URTAL, 39800, Poligny, France
| | | | - F Gillet
- Université Bourgogne Franche-Comté, UMR6249 Chrono-Environnement, 25030, Besançon, France
| | - Y Bouton
- Comité Interprofessionnel de Gestion du Comté - Unité R&D, Bâtiment INRAE URTAL, 39800, Poligny, France
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Jann JC, Mossner M, Flach J, Altrock E, Schmitt N, Ryabov V, Xu Q, Nowak V, Obländer J, Palme I, Weimer N, Streuer A, Jawhar A, Darwich A, Metzgeroth G, Nolte F, Hofmann WK, Nowak D. Topic: AS04-MDS Biology and Pathogenesis/AS04i-Microenvironment and stem cell niche. Leuk Res 2021. [DOI: 10.1016/j.leukres.2021.106680.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Schmitt N, Jann JC, Altrock E, Flach J, Danner J, Uhlig S, Streuer A, Knaflic A, Riabov V, Xu Q, Mehralivand A, Palme I, Nowak V, Oblaender J, Weimer N, Haselmann V, Jawhar A, Darwich A, Weis CA, Marx A, Steiner L, Jawhar M, Metzgeroth G, Boch T, Nolte F, Hofmann WK, Nowak D. Topic: AS08-Treatment/AS08e-New developments - Preclinical studies. Leuk Res 2021. [DOI: 10.1016/j.leukres.2021.106678.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Mossner M, Stöhr A, Jann J, Nolte F, Nowak V, Oblaender J, Pressler J, Xanthopoulos C, Palme I, Baldus C, Schulze T, Boch T, Metzgeroth G, Neumann M, Hofmann W, Nowak D. Erythroferrone (ERFE) and Growth Differentiation Factor 15 (GDF15) Are Overexpressed in Erythroprogenitor Cells of MDS Patients and Associated with Survival. Leuk Res 2017. [DOI: 10.1016/s0145-2126(17)30278-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Jann J, Mossner M, Nolte F, Boch T, Nowak V, Palme I, Obländer J, Pressler J, Xanthopoulos C, Röhl H, Hofmann W, Nowak D. Transcriptomic Changes upon Ageing of Bone Marrow Derived Mesenchymal Stromal Cells and Onset of MDS. Leuk Res 2017. [DOI: 10.1016/s0145-2126(17)30169-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Mossner M, Jann J, Wittig J, Nolte F, Fey S, Nowak V, Obländer J, Pressler J, Müdder K, Klein C, Zens B, Platzbecker U, Schönefeldt C, Fabarius A, Blum H, Schulze T, Haferlach C, Trumpp A, Hofmann W, Medyouf H, Nowak D. 65 MYELODYSPLASTIC SYNDROMES ARE CHARACTERIZED BY RECURRENT PATTERNS IN PATIENT-INDIVIDUAL MUTATIONAL HIERARCHIES THAT ARE SUBJECT TO HIGHLY DYNAMIC SUBCLONAL EVOLUTION DURING THERAPY AND DISEASE PROGRESSION. Leuk Res 2015. [DOI: 10.1016/s0145-2126(15)30066-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Parker J, Haider S, Miller J, Brown S, Robertson N, Lewis M, Sillery E, Nowak V, Sethi H, Bjorkqvist M, Orth M, Tabrizi S. B37 Investigation Of Viability And Response To Inflammatory Stimuli In Cultured Human Myotubes Derived From Patients With Huntington's Disease. Journal of Neurology, Neurosurgery & Psychiatry 2014. [DOI: 10.1136/jnnp-2014-309032.65] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Medyouf H, Mossner M, Nolte F, Jann J, Nowak V, Zens B, Müdder K, Oblaender J, Fey S, Fabarius A, Riedl E, Marx A, Roehl H, Mueller N, Metzgeroth G, Hütter G, Hofmann W, Trumpp A, Nowak D. O-013 Mesenchymal stromal cells support significant engraftment of low-risk myelodysplastic syndromes (MDS) in a murine xenograft model. Leuk Res 2013. [DOI: 10.1016/s0145-2126(13)70035-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Nowak D, Mossner M, Klaumuenzer M, Neumann M, Nowak V, Matthaeus F, Oblaender J, Nolte F, Hofmann W. 254 Array based methylation analysis identifies DBC1, CDH1, DCC and WT1 as differentially methylated and prognostically relevant candidate genes in MDS. Leuk Res 2011. [DOI: 10.1016/s0145-2126(11)70256-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Bernard L, Maron PA, Mougel C, Nowak V, Lévêque J, Marol C, Balesdent J, Gibiat F, Ranjard L. Contamination of soil by copper affects the dynamics, diversity, and activity of soil bacterial communities involved in wheat decomposition and carbon storage. Appl Environ Microbiol 2009; 75:7565-9. [PMID: 19801474 PMCID: PMC2786425 DOI: 10.1128/aem.00616-09] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2009] [Accepted: 09/24/2009] [Indexed: 11/20/2022] Open
Abstract
A soil microcosm experiment was conducted to evaluate the influence of copper contamination on the dynamics and diversity of bacterial communities actively involved in wheat residue decomposition. In the presence of copper, a higher level of CO(2) release was observed, which did not arise from greater wheat decomposition but from a higher level of stimulation of soil organic matter mineralization (known as the priming effect). Such functional modifications may be related to significant modifications in the diversity of active bacterial populations characterized using the DNA stable-isotope probing approach.
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Affiliation(s)
- L. Bernard
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - P. A. Maron
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - C. Mougel
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - V. Nowak
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - J. Lévêque
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - C. Marol
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - J. Balesdent
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - F. Gibiat
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
| | - L. Ranjard
- INRA Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17 Rue Sully, B.V. 86510, 21065 Dijon Cedex, France, UMR CNRS Biogeosciences, UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, F-21000 Dijon, France, CEA Cadarache, DSV/IBEB/SBVME/Groupement de Recherches Appliquées en Phytotechnologie, UMR 6191 Biologie Végétale & Microbiologie Environnementale, CEA/CNRS/Université Aix-Marseille, Saint-Paul-lez-Durance, F-13108, France, INRA Unité Géochimie des Sols et des Eaux Europole Méditerranéen de l'Arbois, BP 80, 13545 Aix en Provence Cedex 04, France
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Elmadfa I, Meyer A, Nowak V, Hasenegger V, Putz P, Verstraeten R, Remaut-DeWinter AM, Kolsteren P, Dostálová J, Dlouhý P, Trolle E, Fagt S, Biltoft-Jensen A, Mathiessen J, Velsing Groth M, Kambek L, Gluskova N, Voutilainen S, Erkkilä A, Vernay M, Krems C, Strassburg A, Vasquez-Caicedo AL, Urban C, Naska A, Efstathopoulou E, Oikonomou E, Tsiotas K, Bountziouka V, Benetou V, Trichopoulou A, Zajkás G, Kovács V, Martos E, Heavey P, Kelleher C, Kennedy J, Turrini A, Selga G, Sauka M, Petkeviciene J, Klumbiene J, Holm Totland T, Andersen LF, Halicka E, Rejman K, Kowrygo B, Rodrigues S, Pinhão S, Ferreira LS, Lopes C, Ramos E, Vaz Almeida MD, Vlad M, Simcic M, Podgrajsek K, Serra Majem L, Román Viñas B, Ngo J, Ribas Barba L, Becker W, Fransen H, Van Rossum B, Ocké M, Margetts B, Rütten A, Abu-Omar K, Gelius P, Cattaneo A. European Nutrition and Health Report 2009. Ann Nutr Metab 2009; 55 Suppl 2:1-40. [PMID: 20104000 DOI: 10.1159/000244607] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- I Elmadfa
- Institute of Nutritional Sciences, University of Vienna, Althanstrasse 14/2F, AT-1090 Vienna, Austria.
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Elmadfa I, Meyer A, Nowak V, Hasenegger V, Putz P, Verstraeten R, Remaut-DeWinter AM, Kolsteren P, Dostálová J, Dlouhý P, Trolle E, Fagt S, Biltoft-Jensen A, Mathiessen J, Velsing Groth M, Kambek L, Gluskova N, Voutilainen N, Erkkilä A, Vernay M, Krems C, Strassburg A, Vasquez-Caicedo AL, Urban C, Naska A, Efstathopoulou E, Oikonomou E, Tsiotas K, Bountziouka V, Benetou V, Trichopoulou A, Zajkás G, Kovács V, Martos E, Heavey P, Kelleher C, Kennedy J, Turrini A, Selga G, Sauka M, Petkeviciene J, Klumbiene J, Holm Totland T, Andersen LF, Halicka E, Rejman K, Kowrygo B, Rodrigues S, Pinhão S, Ferreira LS, Lopes C, Ramos E, Vaz Almeida MD, Vlad M, Simcic M, Podgrajsek K, Serra Majem L, Román Viñas B, Ngo J, Ribas Barba L, Becker V, Fransen H, Van Rossum C, Ocké M, Margetts B. European Nutrition and Health Report 2009. ACTA ACUST UNITED AC 2009; 62:1-405. [PMID: 20081327 DOI: 10.1159/000242367] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- I Elmadfa
- Institute of Nutritional Sciences, University of Vienna, Austria
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Stichtenoth DO, Kreutzer FJ, Gutzki FM, Tsikas D, Nowak V, Frölich JC. Effects of intravenous oxygen on prostacyclin and thromboxane formation in patients with peripheral occlusive arterial disease. Prostaglandins Leukot Essent Fatty Acids 2001; 65:211-4. [PMID: 11728174 DOI: 10.1054/plef.2001.0313] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Oxygen infusion is used in complementary medicine for treatment of peripheral occlusive arterial disease. The mechanism of action is unknown. Thus, we determined the effects of oxygen infusion on prostacyclin, thromboxane and nitric oxide synthesis. Twelve patients with peripheral occlusive arterial disease received oxygen 40 ml/d intravenously for 3 weeks. Study parameters, analyzed by gas chromatography-mass spectrometry on day 1, 3, 10, 16, 21: 2,3-dinor-6-oxo-PGF(1alpha), colour invisible 2,3-dinor-TXB2 and nitrate in one-hour-urine before and after oxygen infusion, reflecting prostacyclin, thromboxane and nitric oxide synthesis. Urinary 8-iso-PGF2alpha, indicating oxidative stress, was assessed in one patient. Urinary 2,3-dinor-6-oxo-PGF1alpha rose from baseline more than 4-fold after oxygen infusion. In contrast, urinary 2,3-dinor-TXB2 excretion remained unchanged. Oxygen infusion had no effect on urinary nitrate excretion. Urinary 8-iso-PGF(2alpha) was not influenced by oxygen infusion with and without diclofenac pretreatment. Our data demonstrate a shift of the prostacyclin/thromboxane ratio toward prostacyclin by oxygen infusion. Thus, a mechanism of action is provided and clinical trials with intravenous oxygen find a rational basis.
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Affiliation(s)
- D O Stichtenoth
- Institute of Clinical Pharmacology, Medizinische Hochschule Hannover, 30623, Germany.
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Astruc D, Nowak V, Grunebaum L, Wiesel ML, Cazenave JP, Babin-Boilletot A, Lutz P. [Effect of E coli or Erwinia asparaginase and corticotherapy on fibrinogen concentration in induction of acute lymphoblastic leukemia in children]. Arch Pediatr 1994; 1:617-8. [PMID: 7994359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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