Searching for a Home Port in a Polyvectic World: Molecular Analysis and Global Biogeography of the Marine Worm Polydora hoplura (Annelida: Spionidae)

The spionid polychaete Polydora hoplura Claparède, 1868 is a shell borer widely occurring across the world and considered introduced in many areas. It was originally described in the Gulf of Naples, Italy. Adult diagnostic features are the palps with black bands, prostomium weakly incised anteriorly, caruncle extending to the end of chaetiger 3, short occipital antenna, and heavy sickle-shaped spines in the posterior notopodia. The Bayesian inference analysis of sequence data of four gene fragments (2369 bp in total) of the mitochondrial 16S rDNA, nuclear 18S, 28S rDNA and Histone 3 has shown that worms with these morphological features from the Mediterranean, northern Europe, Brazil, South Africa, Australia, Republic of Korea, Japan and California are genetically identical, form a well-supported clade, and can be considered conspecific. The genetic analysis of a 16S dataset detected 15 haplotypes of this species, 10 of which occur only in South Africa. Despite the high genetic diversity of P. hoplura in South Africa, we tentatively propose the Northwest Pacific, or at the most the Indo-West Pacific, as its home region, not the Atlantic Ocean or the Eastern Pacific Ocean. The history of the discovery of P. hoplura around the world appears to be intimately linked to global shipping commencing in the mid-19th century, followed by the advent of the global movement of commercial shellfish (especially the Pacific oyster Magallana gigas) in the 20th century, interlaced with continued, complex dispersal by vessels and aquaculture. Given that P. hoplura has been detected in only a few of the 17 countries where Pacific oysters have been established, we predict that it may already be present in many more regions. As global connectivity through world trade continues to increase, it is likely that novel populations of P. hoplura will continue to emerge.

Molecular analysis of Spiophanes bombyx complex (Annelida: Spionidae) with description of a new species

Spiophanes bombyx (Claparède, 1870) from the Gulf of Naples, Tyrrhenian Sea, Italy, was the first described Spiophanes with fronto-lateral horns on the prostomium. It was also considered the only horned species occurring in European waters. Our sequence data of five gene fragments suggest the presence of two horned sibling Spiophanes species in northern Europe: S. cf. bombyx in the North and the Norwegian seas, and S. cf. convexus in Brittany, northern France, and Bay of Biscay, northern Spain. Spiophanes cf. bombyx worms are genetically close to a single examined specimen of S. bombyx from Venice Lagoon, Italy but their conspecificity should be verified by further study. Our sequence data show that horned Spiophanes from the North Pacific are genetically distant from horned European species, and that S. uschakowi Zachs, 1933, originally described from the Sea of Japan (East Sea) is a valid species. The data also suggest the presence of two horned sibling Spiophanes species in the North East Pacific: S. hakaiensis Radashevsky & Pankova, n. sp. distributed from Alaska south to about Point Conception, and S. norrisi Meißner & Blank, 2009, distributed from San Francisco Bay south to Baja California Sur, Mexico. Spiophanes from South America, morphologically similar to S. norrisi, are suggested to belong to a new species. Molecular data also suggest the presence of two sibling species among the worms from northern Europe identified by morphology as S. kroyeri Grube, 1860. Worms from the Barents Sea and northern part of the North Sea are tentatively referred to as S. cf. kroyeri; worms from the northern and central parts of the North Sea and from the Bay of Biscay, northern Spain, are tentatively referred to as S. cf. cirrata M. Sars in G.O. Sars, 1872. Sequence data also show that S. duplex from California is genetically different from morphologically similar worms from South America. The South American worms are referred to resurrected S. soederstroemi Hartman, 1953 which was originally described from off Rio Grande do Sul, Brazil, and then considered as a junior synonym of S. duplex. Analysis of divergence times of Spiophanes lineages suggested that the origin of the most recent common ancestor of horned Spiophanes with metameric nuchal organs was around 11.1 mya (95% HPD: 5.1–19.0 mya) and that the divergence of the North Atlantic and North Pacific lineages was around 7.9 mya (95% HPD: 4.1–13.3 mya). The North Atlantic lineage was estimated to have diverged 4.8 mya (95% HPD: 2.2–8.6 mya), resulting in the origin of S. cf. bombyx and S. cf. convexus. The North Pacific lineage was estimated to have diverged first by the isolation and speciation of S. norrisi 1.7 mya (95% HPD: 2.3–1.0 mya), and then by the isolation and speciation of S. uschakowi and S. hakaiensis n. sp. 1.3 mya (95% HPD: 2.0–0.7 mya). The estimates place the divergences soon after maximum glacial period in the North Pacific (2.4–3.0 mya).

Crenomytilus grayanus 40kDa calponin-like protein: cDNA cloning, sequence analysis, tissue expression, and post-translational modifications

Calponin-like protein (CaP-40), a third major protein after actin and tropomyosin, has recently been identified by us in the Ca2+-regulated thin filaments of mussel Crenomytilus grayanus. It contains calponin homology domain, five calponin family repeats and possesses similar biochemical properties as vertebrate smooth muscle calponin. In this paper, we report a full-length cDNA sequence of CaP-40, study its expression pattern on mRNA and protein levels, evaluate CaP-40 post-translational modifications and perform protein-protein interaction analysis. The full-length sequence of CaP-40 consists of 398 amino acids and has high similarity to calponins among molluscan species. CaP-40 gene is widely expressed in mussel tissues, with the highest expression in adductor and mantle. Comparison of these data with protein content established by mass-spectrometry analysis revealed that the high mRNA content is mirrored by high protein levels for adductor smooth muscles. To provide unbiased insight into the function of CaP-40 and effect of its over-expression in adductor smooth muscle, we built protein-protein interaction network of identified Crenomytilus grayanus proteome. In addition, we showed that CaP-40 is subjected to post-translational N- and C-terminal acetylation at N127, G229 and G349 sites which potentially regulates its function in vivo.

Molecular analysis of six Rhynchospio Hartman, 1936 species (Annelida: Spionidae) with comments on the evolution of brooding within the group

Rhynchospio Hartman, 1936 is a small group of spionid polychaetes currently comprising ten described species distributed mainly in the Pacific. Five species examined to date are hermaphrodites producing spermatozoa with long nuclei, oocytes with thin and smooth envelopes, and dorsally brooding their offspring. Since our first molecular analysis of four Rhynchospio species, we have collected additional material from Northern Territory, Australia, and Oregon, USA. Herein, we describe the gamete and adult morphology of the newly collected material and use molecular analyses to provide new insight on the phylogenetic relationships of six Rhynchospio species. Adults of R. cf. foliosa from Oregon are hermaphrodites, but in contrast to other Rhynchospio, they produce spermatozoa with short nuclei (ect-aquasperm), oocytes with thick vesiculate envelopes, and likely have a holopelagic larval development. Analysis of four gene fragments, comprising mitochondrial 16S rDNA, and nuclear 18S, 28S rDNA, and Histone 3 (2516 bp in total) showed Rhynchospio to be a monophyletic group, with R. cf. foliosa being a distant sister to the five other species. Rhynchospio cf. foliosa was closer to M. arctia having ect-aquasperm and vesiculate thick-envelop oocytes (p = 14.40%) than to Spioninae members B. proboscidea and P. elegans, having introsperm and oocytes with thin and smooth envelopes (p = 15.39 and 16.54%, respectively). We hypothesize that brooding might have evolved from free-spawning inside the Rhynchospio clade, but this hypothesis should be tested in a future analysis.

Molecular analysis of the Pygospio elegans group of species (Annelida: Spionidae)

Pygospio elegans Claparède, 1863, the type species of the genus Pygospio, was originally described from Normandy, France, and later widely reported from boreal waters in the northern hemisphere. Sequence data of four gene fragments (2576 bp in total) of the mitochondrial 16S rDNA, nuclear 18S and 28S rDNA, and Histone 3 have shown that individuals from California and Oregon, USA, Scotland and the White Sea, Russia were genetically similar (the average p-distances for the combined data between the four groups ranged from 0.04 to 0.16%, average p = 0.1%). These individuals are considered to be conspecific and the amphiboreal distribution of P. elegans is here confirmed. Adult morphology of the species is briefly described and illustrated. The molecular analysis revealed two genetically distant populations, Pygospio sp. 1 from the Sea of Okhotsk and Pygospio sp. 2 from Oregon. The morphological differences and high average genetic p-distances for the combined data (ranging from 3.06 to 3.18%, average p = 3.12%) between Pygospio sp. 2 and P. elegans suggest the presence of an undescribed Pygospio species co-occurring with P. elegans in Oregon. High morphological similarity and moderate genetic p-distances for the combined data (ranging from 1 to 1.11%, average p = 1.07%) between Pygospio sp. 1 and P. elegans indicate a comparatively recent genetic divergence of the Pygospio population in the Sea of Okhotsk. Taking into account the high genetic similarity of the remote European and North American populations of P. elegans and medial location of the Pygospio sp. 1 population, we suggest the latter to belong to a separate species. However, this conclusion should be verified in further studies on the morphology, reproductive biology and genetics of this population. The present findings show the need to re-examine Pygospio from the Asian Pacific and elsewhere that have been identified as P. elegans.

[Fish growth hormone genes: divergence of intron sequence in charrs of Salvelinus genus]

Sequences of the two large introns (C and D) from two paralogous growth hormone genes, GH1 and GH2, were compared in eight charr species of the Salvelinus genus (Osteichthes, Salmonidae). It was demonstrated that the rates of intron divergence in these two genes were remarkably different. Introns in the GH1 gene appeared to be more conservative, while the rate of intron variations was considerably higher in the GH2 gene. These data suggest that noncoding regions of nuclear genes are shaped by selective pressure. The lower congruence of phylogenetic scheme constructed based on an analysis of the GH1 introns compared to that based on the GH2 data, as well as with the traditional views on the evolution of charr species, also favors the supposition on contrasted patterns of selective pressure in noncoding intronic sequences.