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Peta VJ, Hartman T, Aryal S, Gurung BS, Singh R, Haas S, Bomgni A, Do T, Dhiman SS, Gadhamshetty V, Gnimpieba E. CREID - A ChemoReceptor-Effector Interaction Database. bioRxiv 2023:2023.05.04.539426. [PMID: 37461680 PMCID: PMC10349942 DOI: 10.1101/2023.05.04.539426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 08/05/2023]
Abstract
The ChemoReceptor-Effector Interaction Database (CREID) is a collection of bacterial chemoreceptor and effector protein and interaction data to understand the process that chemoreceptors and effectors play in various environments. Our website includes terms associated with chemosensory pathways to educate users and those involved in collaborative research to help them understand this complex biological network. It includes 2,440 proteins involved in chemoreceptor and effector systems from 7 different bacterial families with 1,996 chemoeffector interactions. It is available at https://reactcreid.bicbioeng.org.
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Affiliation(s)
- Vincent J Peta
- Biomedical Engineering Department, University of South Dakota, Sioux Falls, SD 57107
| | - Timothy Hartman
- Biomedical Engineering Department, University of South Dakota, Sioux Falls, SD 57107
| | - Shiva Aryal
- Computer Science Department, University of South Dakota, Vermillion, SD 57069
| | | | - Ram Singh
- Chemical and Biological Engineering Department, South Dakota School of Mines and Technology, Rapid City, SD 57701
| | - Samuel Haas
- Biomedical Engineering Department, University of South Dakota, Sioux Falls, SD 57107
| | - Alain Bomgni
- Biomedical Engineering Department, University of South Dakota, Sioux Falls, SD 57107
| | - Tuyen Do
- Biomedical Engineering Department, University of South Dakota, Sioux Falls, SD 57107
| | - Saurabh S. Dhiman
- Chemical and Biological Engineering Department, South Dakota School of Mines and Technology, Rapid City, SD 57701
| | - Venkataramana Gadhamshetty
- Civil and Environmental Engineering Department, South Dakota School of Mines and Technology, Rapid City, SD 57701
| | - Etienne Gnimpieba
- Biomedical Engineering Department, University of South Dakota, Sioux Falls, SD 57107
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