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Zhu XJ, Chen Y, Wu B, Ge YY, Wu T, Qiao Q, Zhao KC, Cui LB. [Establishment and preliminary application of quantitative real-time PCR assay for the detection of SARS-CoV-2 subgenomic nucleocapsid RNA]. Zhonghua Yu Fang Yi Xue Za Zhi 2023; 57:268-272. [PMID: 36797587 DOI: 10.3760/cma.j.cn112150-20220407-00331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
Objective: To establish a rapid and specific quantitative real-time PCR (qPCR) method for the detection of SARS-CoV-2 subgenomic nucleocapsid RNA (SgN) in patients with COVID-19 or environmental samples. Methods: The qPCR assay was established by designing specific primers and TaqMan probe based on the SARS-CoV-2 genomic sequence in Global Initiative of Sharing All Influenza Data (GISAID) database. The reaction conditions were optimized by using different annealing temperature, different primers and probe concentrations and the standard curve was established. Further, the specificity, sensitivity and repeatability were also assessed. The established SgN and genomic RNA (gRNA) qPCR assays were both applied to detect 21 environmental samples and 351 clinical samples containing 48 recovered patients. In the specimens with both positive gRNA and positive SgN, 25 specimens were inoculated on cells. Results: The primers and probes of SgN had good specificity for SARS-CoV-2. The minimum detection limit of the preliminarily established qPCR detection method for SgN was 1.5×102 copies/ml, with a coefficient of variation less than 1%. The positive rate of gRNA in 372 samples was 97.04% (361/372). The positive rates of SgN in positive environmental samples and positive clinical samples were 36.84% (7/19) and 49.42% (169/342), respectively. The positive rate and copy number of SgN in Wild strain were lower than those of SARS-CoV-2 Delta strain. Among the 25 SgN positive samples, 12 samples within 5 days of sampling time were all isolated with virus; 13 samples sampled for more than 12 days had no cytopathic effect. Conclusion: A qPCR method for the detection of SARS-CoV-2 SgN has been successfully established. The sensitivity, specificity and repeatability of this method are good.
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Affiliation(s)
- X J Zhu
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
| | - Y Chen
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
| | - B Wu
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
| | - Y Y Ge
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
| | - T Wu
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
| | - Q Qiao
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
| | - K C Zhao
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
| | - L B Cui
- NHC Key laboratory of Enteric Pathogenic Microbiology/Institute of Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention/Jiangsu Province Engineering Research Center of Health Emergency, Nanjing 210009, China
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Liu F, Ge YY, Guo W. [Underlying mechanism and preventive measures of distal stent graft-induced new entry after thoracic endovascular aortic repair for Stanford type B aortic dissection]. Zhonghua Wai Ke Za Zhi 2018; 56:749-752. [PMID: 30369154 DOI: 10.3760/cma.j.issn.0529-5815.2018.10.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Distal stent graft-induced new entry (dSINE) is the complication with high incidence following thoracic endovascular aortic repair (TEVAR) for Stanford type B aortic dissection. This review the underlying mechanism and preventive measures regarding dSINE. General mechanism include: the fragile state of dissected aortic wall and intimal flap is pathophysiologic foundation of dSINE; the continued resistive force to the deformation of stent-graft is mechanical cause of intimal injury; the intimal flap movement within a cardiac cycle result in local damage accumulation in distal site of stent-graft. Aortic remolding play an important role in prophylaxis of dSINE.
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Affiliation(s)
- F Liu
- Department of Vascular and Endovascular Surgery, the First Hospital of Hebei Medical University, Shijiazhuang 050030, China
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Ge YY, Wang XZ, Yuan N, Yuan LY, Ma WH, Hu Y. [Effect of ultrasound guided patient-controlled paravertebral block on pulmonary function in patients with multiple fractured ribs]. Zhonghua Wai Ke Za Zhi 2016; 54:924-928. [PMID: 27916036 DOI: 10.3760/cma.j.issn.0529-5815.2016.12.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To investigated the effects of patient controlled intravenous analgesia and ultrasound guided patient-controlled paravertebral block on pulmonary function in patients with multiple fractured ribs. Methods: From May 2015 to March 2016, 60 patients with multiple rib fractures in Ningbo NO.6 Hospital with American Society of Anesthesiologists Ⅱ-Ⅲ underwent internal fixation, including 30 males and 30 females aged from 16 to 70 years(mean age (54.6±15.2) years). All patients were randomly divided into 2 groups (n=30 each): patient controlled intravenous analgesia(PCIA) group and patient controlled thoracic paravertebral block(PCPB) group.PCIA solution contained sufentanil 2 μg/kg in 100 ml of normal saline.The PCIA pump was set up to deliver a 2 ml bolus dose with 15 minutes lockout interval and background infusion at 2 ml/hour.In PCPB group, the patients received paravertebral injection of 0.2% ropivocaine 15 ml on the corresponding area of fractured side under ultrasound guidance at the end of operation, and then received PCPB.PCPB solution contained 0.75% ropivacaine 67 ml in 250 ml of normal saline, and the pump was set up to deliver a 5 ml bolus dose, with 15 minutes lock out interval and background infusion at 5 ml/hour. Both analgesia lasted to 72 hours after operation.Before the operation, at 30 minutes, 60 minutes, 1 day, 2 days, 3 days after analgesia, arterial blood samples were collected to test the levels of pH, PaO2, PaCO2, PaO2/FiO2 and PA-aDO2. The pulmonary function was also examined before and 3 days after the operation through FEV1 and FEV1%. Results: Compared with PCIA group at 30 minutes, 60 minutes, 1 day, 2 days, 3 days after analgesia, the level of PaO2 ((85.1±9.7)mmHg vs.(72.4±12.3)mmHg, (90.3±12.4)mmHg vs.(73.5±7.8)mmHg, (94.2±8.2)mmHg vs.(86.1±5.6)mmHg, (98.5±7.0)mmHg vs. (88.8±7.5)mmHg, (99.6±9.8)mmHg vs. (91.3±8.6)mmHg, P<0.05)) and PaO2/FiO2 were significantly increased ((405.1±46.0)mmHg vs. (340.1±58.9)mmHg, (430.5±59.1)mmHg vs. (344.0±65.4)mmHg, (448.3±39.1)mmHg vs. (410.1±26.7)mmHg, (460.1±33.5)mmHg vs. (423.2±36.5)mmHg, (465.1±28.2)mmHg vs. (435.1±40.8)mmHg, P<0.05)), the level of PA-aDO2 was decreased ((22.9±4.6)mmHg vs. (36.6±5.1)mmHg, (17.7±4.7)mmHg vs. (34.5±2.9)mmHg, (13.8±4.1)mmHg vs. (21.9±3.2)mmHg, (13.5±4.6)mmHg vs. (19.2±3.8)mmHg, (12.4±2.0)mmHg vs. (17.7±2.4)mmHg, P<0.05)), and FEV1, FEV1% were significantly increased at 3 days after operation in PCPB group ((2.9±0.4)mmHg vs.(2.2±0.5)mmHg, (78.1±4.7)mmHg vs.(64.8±4.3)mmHg; P<0.01)). Conclusion: Ultrasound guided patient-controlled paravertebral block improves the arterial oxygenation function and accelerates the recovery of pulmonary function in patients with multiple-fractured ribs after internal fixation operation.
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Affiliation(s)
- Y Y Ge
- *Department of Anesthesiology, Ningbo NO.6 Hospital, Ningbo 315040, China
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Zhang MH, Du X, Guo W, Liu XP, Jia X, Xiong J, Ma XH, Zhang HP, Xu YL, Wu Y, Ge YY. [Reconstruct abdominal aortic branch arteries totally by endovascular repair in complex aortic aneurysms: a single-centre experience]. Zhonghua Wai Ke Za Zhi 2016; 54:624-7. [PMID: 27502140 DOI: 10.3760/cma.j.issn.0529-5815.2016.08.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
OBJECTIVE To report experiences and results of complex aortic aneurysms involving the visceral arteries treating by total endovascular repair. METHODS Seventy cases of thoracoabdominal aortic lesions treating by total endovascular repair in Department of Vascular Surgery, People's Liberation Army General Hospital from January 2011 to December 2014 were retrospectively analyzed. There were 47 cases underwent chimney technique, 6 underwent sandwich technique, 15 underwent fenestration technique and 2 underwent branched stent grafts technique. RESULTS The average follow-up time was 21 months, range from 3 to 47 months. Completion angiography showed that typeⅠ endoleak of chimney, sandwich, fenestration and branched stent grafts group were 9/47, 5/6, 2/15 and 0, respectively. While at 30-day typeⅠ endoleak reduced to 7/47, 2/6, 0 and 0. During follow-up, there were 3 target vessel stents occlusion in chimney group, the patency rate of target vessel stent was 95.1% (58/61). In sandwich, fenestration and branched stent grafts group, all the target vessel stents kept patent. CONCLUSION In this study, chimney, sandwich, fenestration and branched stent grafts techniques show good short-term and midterm results, the long-term effects still need further studies.
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Affiliation(s)
- M H Zhang
- Department of Vascular Surgery, People's Liberation Army General Hospital, Beijing 100853, China
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Wei R, Liu LS, Wang LW, Li YB, Zhang T, Liu J, Zuo SW, Jia SH, Song YX, Wu ZY, Duan C, Ge YY, Li HB, Xiong J, Jia X, Wang X, Kong W, Xu XP, Guo W, Huo Y. Association of Resting Heart Rate with Infrarenal Aortic Diameter: A Cross Sectional Study in Chinese Hypertensive Adults. Eur J Vasc Endovasc Surg 2015; 50:714-21. [PMID: 26474738 DOI: 10.1016/j.ejvs.2015.05.022] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Accepted: 05/27/2015] [Indexed: 01/16/2023]
Abstract
OBJECTIVE Elevated resting heart rate (RHR) has been shown to be a risk marker for cardiovascular disease. Results from studies on the effects of RHR in large arteries are limited to the functional changes of those arteries, while the association between RHR and aortic diameter remains largely understudied. METHODS This was a cross sectional study of hypertensive Chinese adults from rural areas. The maximum infrarenal aortic diameter (maxIAD) from renal arteries to the iliac bifurcation was obtained by ultrasound. MaxIADs in different RHR groups were compared in males and females separately because of the significant differences between sexes. Multiple regression analysis was used to determinate the correlation between RHR and maxIAD. Further interactions between three factors (BMI, smoking, and anti-hypertensive regimens) and RHR for maxIAD were examined using subgroup analysis. RESULTS 19,200 subjects were enrolled in the study, with an average age of 64.8±7.4 years and 61.6% females. Only 22 cases (0.11%) were detected with AAA, with males (n = 17) presenting a higher AAA incidence than females (n = 5). In subjects ≥65 years, there were 18 (0.19%) AAA, and 15 (83.3%) had a history of smoking. In the total subjects, the mean maxIAD ranged from 15.7±2.1 mm to 15.2±2.2 mm as RHR changed from the lowest quartile to the highest (≥84 bpm) in males, with a similar tendency observed in females. The correlation coefficient of RHR on maxIAD was -0.17 in males and -0.12 in females. Further subgroup analysis revealed that smoking exaggerated the correlation between RHR and maxIAD, but only in females. CONCLUSIONS A low AAA incidence was observed in this hypertensive Chinese population. There was a negative association between RHR and maxIAD, potentially exaggerated by smoking, especially in females.
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Affiliation(s)
- R Wei
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China; School of Medicine, Nankai University, Tianjin, People's Republic of China
| | - L S Liu
- Institute of Biomedicine, Anhui Medical University, Hefei, People's Republic of China
| | - L W Wang
- Institute of Biomedicine, Anhui Medical University, Hefei, People's Republic of China
| | - Y B Li
- National Clinical Research Center for Kidney Diseases, Southern Medical University, Guangzhou, People's Republic of China
| | - T Zhang
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - J Liu
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - S W Zuo
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - S H Jia
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - Y X Song
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - Z Y Wu
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - C Duan
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China; School of Medicine, Nankai University, Tianjin, People's Republic of China
| | - Y Y Ge
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - H B Li
- Institute of Biomedicine, Anhui Medical University, Hefei, People's Republic of China
| | - J Xiong
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - X Jia
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China
| | - X Wang
- Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, Beijing, People's Republic of China; Key Laboratory of Molecular Cardiovascular Science, Ministry of Education, Beijing, People's Republic of China
| | - W Kong
- Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, Beijing, People's Republic of China; Key Laboratory of Molecular Cardiovascular Science, Ministry of Education, Beijing, People's Republic of China
| | - X P Xu
- Institute of Biomedicine, Anhui Medical University, Hefei, People's Republic of China
| | - W Guo
- Department of Vascular and Endovascular Surgery, General Hospital of People's Liberation Army, Beijing, People's Republic of China.
| | - Y Huo
- Department of Cardiology, Peking University First Hospital, Beijing, People's Republic of China.
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Zhang F, Ge YY, Wang WY, Shen XL, Yu XY. Assessing genetic divergence in interspecific hybrids of Aechmea gomosepala and A. recurvata var. recurvata using inflorescence characteristics and sequence-related amplified polymorphism markers. Genet Mol Res 2012; 11:4169-78. [PMID: 23079994 DOI: 10.4238/2012.september.27.2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Conventional hybridization and selection techniques have aided the development of new ornamental crop cultivars. However, little information is available on the genetic divergence of bromeliad hybrids. In the present study, we investigated the genetic variability in interspecific hybrids of Aechmea gomosepala and A. recurvata var. recurvata using inflorescence characteristics and sequence-related amplified polymorphism (SRAP) markers. The morphological analysis showed that the putative hybrids were intermediate between both parental species with respect to inflorescence characteristics. The 16 SRAP primer combinations yield 265 bands, among which 154 (57.72%) were polymorphic. The genetic similarity was an average of 0.59 and ranged from 0.21 to 0.87, indicating moderate genetic divergence among the hybrids. The unweighted pair group method with arithmetic average (UPGMA)-based cluster analysis distinguished the hybrids from their parents with a genetic distance coefficient of 0.54. The cophenetic correlation was 0.93, indicating a good fit between the dendrogram and the original distance matrix. The two-dimensional plot from the principal coordinate analysis showed that the hybrids were intermediately dispersed between both parents, corresponding to the results of the UPGMA cluster and the morphological analysis. These results suggest that SRAP markers could help to identify breeders, characterize F(1) hybrids of bromeliads at an early stage, and expedite genetic improvement of bromeliad cultivars.
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Affiliation(s)
- F Zhang
- Flower Research and Development Centre, Zhejiang Academy of Agricultural Sciences, Hangzhou, P.R. China.
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