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Masuda Y, Hasebe R, Kuromi Y, Matsuo M, Hishinuma M, Ohbayashi T, Nishimura R. Three-dimensional morphology of bovine blastocysts hatched against lipopolysaccharide exposure in vitro. Reprod Biol 2024; 24:100843. [PMID: 38160585 DOI: 10.1016/j.repbio.2023.100843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 12/01/2023] [Accepted: 12/09/2023] [Indexed: 01/03/2024]
Abstract
Embryo transfer in cattle is globally becoming more ubiquitous, but the pregnancy rate is lower than that of artificial insemination. The uterus contains its own bacteria, and concentrations of lipopolysaccharides (LPS) from gram-negative bacteria are higher in uteri affected by endometritis than in healthy uteri and they suppress embryogenesis. The purpose of this study was to investigate the morphological characteristics of bovine embryos with a higher viability and implantability, by analyzing the morphology of bovine blastocysts that successfully hatched under challenge of LPS, using an optical coherence tomography (OCT) system. Developing embryos produced by in vitro fertilization that had reached the blastocyst stage on Day 7 were three-dimensionally scanned using an OCT system, then were continued to culture with or without LPS until Day 9, when the presence or absence of hatching was determined. The OCT-captured three-dimensional images were used to quantify 20 different metrics, including inner cell mass (ICM), trophectoderm, blastocoel, and total embryo volume; each of the parameters was compared between the hatched and unhatched embryos. Under the LPS challenge, hatched embryos had higher ICM thickness and volume, and lower trophectoderm thickness than unhatched embryos. Furthermore, hatched embryos under LPS challenge had higher ICM thickness and ICM volume than hatched embryos without LPS challenge. The present results suggest the possibility that ICM thickness and ICM volume calculated by OCT system could be indices for good quality bovine embryos.
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Affiliation(s)
- Yasumitsu Masuda
- Department of Animal Science, Tottori Livestock Research Center, Tottori, Japan
| | | | | | - Minami Matsuo
- Department of Animal Science, Tottori Livestock Research Center, Tottori, Japan
| | - Mitsugu Hishinuma
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori, Japan
| | - Tetsuya Ohbayashi
- Organization for Research Initiative and Promotion, Tottori University, Tottori, Japan
| | - Ryo Nishimura
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori, Japan,.
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Masuda Y, Hasebe R, Kuromi Y, Hishinuma M, Ohbayashi T, Nishimura R. Hatchability evaluation of bovine IVF embryos using OCT-based 3D image analysis. J Reprod Dev 2023; 69:239-245. [PMID: 37574267 PMCID: PMC10602767 DOI: 10.1262/jrd.2023-009] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Accepted: 07/10/2023] [Indexed: 08/15/2023] Open
Abstract
Although embryo transfer is widely applied in cattle, many of the transferred embryos do not result in pregnancy. To determine a new parameter for bovine embryo evaluation, we investigated the relationships between in vitro hatchability and embryo morphological parameters using optical coherence tomography (OCT) that we established recently. Bovine embryos were obtained from Japanese Black cattle by in vitro fertilization (IVF). The quality of the blastocysts was examined under an inverted microscope and confirmed as Codes 1-3 according to the IETS standards for embryo evaluation. The OCT images of the embryos were captured on Day 7 after IVF, and the embryos were cultured until Day 9 to determine their hatchability. During OCT, the embryos were irradiated with near-infrared light for a few minutes to obtain three-dimensional images. In total, 22 parameters were assessed for each of the 42 embryos, of which 25 hatched (H embryos) and 17 did not (NH embryos). The thickness of the trophectoderm (TE) and TE+zona pellucida (ZP) was lesser, and the volumes of the TE, ZP, blastocoel, and whole embryo and blastocoel diameter were greater in the H embryos than in the NH embryos. PCA identified that the increase in the blastocoel-related value along with the decrease in the thickness-related value of the TE and/or ZP could be indicators for evaluating the hatchability of bovine IVF embryos. These results support the idea that OCT-captured structural data of blastocyst-stage embryos can be used as a potential model to predict the quality of bovine embryos.
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Affiliation(s)
- Yasumitsu Masuda
- Department of Animal Science, Tottori Livestock Research Center, Tottori 680-8553, Japan
| | - Ryo Hasebe
- SCREEN Holdings Co., Ltd., Kyoto 612-8486, Japan
| | | | - Mitsugu Hishinuma
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan
| | - Tetsuya Ohbayashi
- Organization for Research Initiative and Promotion, Tottori University, Tottori 680-8553, Japan
| | - Ryo Nishimura
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan
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Kuromi Y, Kitamura S, Endo T, Ueno S, Kokura K, Ohbayashi T. Cisplatin Induces Cell Death in Rat Adult Kidney Stem/ Progenitor Cell-Derived Kidney Organoids. Yonago Acta Med 2023; 66:153-158. [PMID: 36820290 PMCID: PMC9937970 DOI: 10.33160/yam.2023.02.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 01/17/2023] [Indexed: 02/17/2023]
Abstract
Background The use of stem/ progenitor cell-derived organoids to evaluate the toxicity of chemical substances has widely increased. Organoids with nephron-like structures (NLS) can be derived from rat adult kidney stem/ progenitor cells (rKS cells) using three-dimensional culture. In this study, we examined the effects of cisplatin, an anticancer drug that induces nephrotoxicity in vivo, on rKS cell-derived NLS. Methods Twelve organoids were simultaneously derived from three-dimensionally cultured rKS cells in Matrigel matrices. The surface area of each organoid was measured using microscopy-based imaging, and the morphological changes of NLS were monitored using an image analysis method. NLS were exposed to cisplatin, and their associated effects were assessed. Results NLS elongated over time. The surface areas of the 12 organoids were almost constant. Cisplatin exposure induced cell death in NLS and inhibited the increase in the surface area of the organoids. Conclusion Cisplatin exposure induces damage to NLS derived from rKS cells. Thus, the organoids may be valuable as an in vitro model to assess nephrotoxicity.
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Affiliation(s)
- Yasushi Kuromi
- Research Facility, Advanced Medicine & Translational Research Center, Organization for Research Initiative and Promotion, Tottori University, Yonago 683-8503, Japan
| | - Shinji Kitamura
- Department of Nephrology, Rheumatology, Endocrinology, and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama 700-8558, Japan
| | - Takeshi Endo
- Research Facility, Advanced Medicine & Translational Research Center, Organization for Research Initiative and Promotion, Tottori University, Yonago 683-8503, Japan
| | - Shota Ueno
- Research Facility, Advanced Medicine & Translational Research Center, Organization for Research Initiative and Promotion, Tottori University, Yonago 683-8503, Japan,Research and Development Division, Kikkoman Corporation, 338 Noda, Noda, Chiba 278-0037, Japan
| | - Kenji Kokura
- Department of Biomolecular Science, Faculty of Science, Toho University, Funabashi 274-8510, Japan
| | - Tetsuya Ohbayashi
- Research Facility, Advanced Medicine & Translational Research Center, Organization for Research Initiative and Promotion, Tottori University, Yonago 683-8503, Japan
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Mitsi M, Urbane R, Simon B, Kuromi Y, Hasebe R, Dhar S. Abstract 1884: Optical coherence tomography for label-free real 3D imaging of ex-vivo tumor cultures. Cancer Res 2022. [DOI: 10.1158/1538-7445.am2022-1884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
The use of advanced ex-vivo human organotypic cultures is rapidly growing in the field of oncology research and diagnostics, with a focus on patient-derived organoids and tumor tissue specimens cultured in artificial systems capable of replicating tumor development mechanisms. These mechanisms include metastasis, angiogenesis and formation of dysplasia. Our objective is to enhance the label-free imaging and analytical capabilities of these complex tissue samples to enable screening and diagnostics applications.SCREEN Holdings Inc., has developed a unique infrared laser-based optical coherence tomography (OCT) technology enabling non-invasive, label-free, three-dimensional (3D) imaging of tumoroids, epithelial cystic organoids, sprouting endothelial neo-vasculature and metastatic single cells. The imaging is carried out on the 3DProSeed hydrogel plates developed by Ectica Technologies, a glass-bottom 96-well plate featuring pre-casted, synthetic and optically clear hydrogels for ex-vivo tumor cultures.Here we present culture and imaging protocols with the resulting 3D tomographic reconstructions of endothelial sprouting vessels, cystic epithelial organoids of the colon and 3D invasion assays of highly metastatic glioma cells.
Citation Format: Maria Mitsi, Riccardo Urbane, Benjamin Simon, Yasushi Kuromi, Ryo Hasebe, Sumeer Dhar. Optical coherence tomography for label-free real 3D imaging of ex-vivo tumor cultures [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 1884.
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Affiliation(s)
- Maria Mitsi
- 1ECTICA Technologies AG, Zurich, Switzerland
| | | | | | | | | | - Sumeer Dhar
- 3SCREEN EUROPE GP B.V, Amstelveen, Netherlands
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Masuda Y, Hasebe R, Kuromi Y, Kobayashi M, Urataki K, Hishinuma M, Ohbayashi T, Nishimura R. Three-Dimensional Live Imaging of Bovine Preimplantation Embryos: A New Method for IVF Embryo Evaluation. Front Vet Sci 2021; 8:639249. [PMID: 33981741 PMCID: PMC8107228 DOI: 10.3389/fvets.2021.639249] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Accepted: 03/11/2021] [Indexed: 12/21/2022] Open
Abstract
Conception rates for transferred bovine embryos are lower than those for artificial insemination. Embryo transfer (ET) is widely used in cattle but many of the transferred embryos fail to develop, thus, a more effective method for selecting bovine embryos suitable for ET is required. To evaluate the developmental potential of bovine preimplantation embryos (2-cell stage embryos and blastocysts), we have used the non-invasive method of optical coherence tomography (OCT) to obtain live images. The images were used to evaluate 22 parameters of blastocysts, such as the volume of the inner cell mass and the thicknesses of the trophectoderm (TE). Bovine embryos were obtained by in vitro fertilization (IVF) of the cumulus-oocyte complexes aspirated by ovum pick-up from Japanese Black cattle. The quality of the blastocysts was examined under an inverted microscope and all were confirmed to be Code1 according to the International Embryo Transfer Society standards for embryo evaluation. The OCT images of embryos were taken at the 2-cell and blastocyst stages prior to the transfer. In OCT, the embryos were irradiated with near-infrared light for a few minutes to capture three-dimensional images. Nuclei of the 2-cell stage embryos were clearly observed by OCT, and polynuclear cells at the 2-cell stage were also clearly found. With OCT, we were able to observe embryos at the blastocyst stage and evaluate their parameters. The conception rate following OCT (15/30; 50%) is typical for ETs and no newborn calves showed neonatal overgrowth or died, indicating that the OCT did not adversely affect the ET. A principal components analysis was unable to identify the parameters associated with successful pregnancy, while by using hierarchical clustering analysis, TE volume has been suggested to be one of the parameters for the evaluation of bovine embryo. The present results show that OCT imaging can be used to investigate time-dependent changes of IVF embryos. With further improvements, it should be useful for selecting high-quality embryos for transfer.
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Affiliation(s)
- Yasumitsu Masuda
- Department of Animal Science, Tottori Livestock Research Center, Tottori, Japan
| | | | | | | | - Kanako Urataki
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori, Japan
| | - Mitsugu Hishinuma
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori, Japan
| | - Tetsuya Ohbayashi
- Organization for Research Initiative and Promotion, Tottori University, Tottori, Japan
| | - Ryo Nishimura
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori, Japan
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Masuda Y, Hasebe R, Kuromi Y, Kobayashi M, Iwamoto M, Hishinuma M, Ohbayashi T, Nishimura R. Three-dimensional live imaging of bovine embryos by optical coherence tomography. J Reprod Dev 2021; 67:149-154. [PMID: 33487605 PMCID: PMC8075722 DOI: 10.1262/jrd.2020-151] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
While embryo transfer (ET) is widely practiced, many of the transferred embryos fail to develop in cattle. To establish a more effective method for selecting
bovine embryos for ET, here we quantified morphological parameters of living embryos using three-dimensional (3D) images non-invasively captured by optical
coherence tomography (OCT). Seven Japanese Black embryos produced by in vitro fertilization that had reached the expanded blastocyst stage
after 7 days of culture were transferred after imaged by OCT. Twenty-two parameters, including thickness and volumes of the inner cell mass, trophectoderm, and
zona pellucida, and volumes of blastocoel and whole embryo, were quantified from 3D images. Four of the seven recipients became pregnant. We suggest that these
22 parameters can be potentially employed to evaluate the quality of bovine embryos before ET.
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Affiliation(s)
- Yasumitsu Masuda
- Department of Animal Science, Tottori Livestock Research Center, Tottori 689-2503, Japan
| | - Ryo Hasebe
- SCREEN Holdings Co., Ltd., Kyoto 612-8486, Japan
| | | | | | - Misaki Iwamoto
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan
| | - Mitsugu Hishinuma
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan
| | - Tetsuya Ohbayashi
- Organization for Research Initiative and Promotion, Tottori University, Tottori 680-8550, Japan
| | - Ryo Nishimura
- Laboratory of Theriogenology, Joint Department of Veterinary Medicine, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan
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Dhar S, Ueda A, Muira T, Kuromi Y, Mori Y, Fujimoto H. Abstract 3722: Novel Optical Coherence Tomography (OCT) technology for no-invasive 3D ex vivo drug activity profiling. Cancer Res 2019. [DOI: 10.1158/1538-7445.am2019-3722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Drug discovery and early to late drug development process have relied on 2D monolayer based in vitro assay platforms and small animal models. The limitations posed by 2D in vitro assays for evaluation of targeted and immunomodulatory agents have prompted researchers to develop novel 3D in vitro and ex vivo platforms utilizing the tumor microenvironment like conditions for better understanding of mechanisms of novel targeted and immunomodulatory drug/compound entities. Therefore, rapid development of robust 3D ex vivo cell culture as drug efficacy testing system for drug discovery, development and profiling of standard of care and Immunotherapeutic molecules have led to understanding the relevance of these platforms within the scientific and clinical community. 3D ex vivo platforms are being diligently evaluated as better predictive drug efficacy testing tools in preclinical as well as clinical space in the quest for profiling of novel anticancer entities (as single or two drug combinations). Within this context, there has been growing need in improved imaging and analysis of complex 3D structures (Multicellular tumor spheroids/Organoids) containing multiple cellular components such as, Tumor cells, stromal cells, various immune cells to monitor signaling pathways and assess immune events including T cell infiltration as drug efficacy measurement. At SCREEN LifeScience, we have developed a novel OCT based technology for imaging and analysis of complex 3D structures, such as, spheroid /organoid for growth & morphological profiling, quantification of internal cavities, drug sensitivity testing to capture the events leading to tumor cell death and assessing mechanism of drug action. Additionally, this technology allows us perform large tissue imaging, non-invasive monitoring of macro and sprouted neo-vasculature without the need for fluorescent staining for providing quantitative information about the vascular morphological changes, thereby allowing for the evaluation of anti-angiogenic drugs in real time. In summary, the OCT technology shown to be robust and versatile technology useful for studying multiple disease models, including cancer. Its utility in regeneration medicine is being further evaluated as a versatile non-invasive platform.
Citation Format: Sumeer Dhar, Akihiro Ueda, Takemitsu Muira, Yasushi Kuromi, Yuki Mori, Hiroki Fujimoto. Novel Optical Coherence Tomography (OCT) technology for no-invasive 3D ex vivo drug activity profiling [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 3722.
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Affiliation(s)
- Sumeer Dhar
- 1SCREEN LifeScience, Amstelveen, Netherlands
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Kokura K, Kuromi Y, Endo T, Anzai N, Kazuki Y, Oshimura M, Ohbayashi T. A kidney injury molecule-1 (Kim-1) gene reporter in a mouse artificial chromosome: the responsiveness to cisplatin toxicity in immortalized mouse kidney S3 cells. J Gene Med 2018; 18:273-281. [PMID: 27591740 PMCID: PMC5095820 DOI: 10.1002/jgm.2925] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2016] [Revised: 08/29/2016] [Accepted: 08/29/2016] [Indexed: 02/05/2023] Open
Abstract
Background Kidney injury molecule‐1 (Kim‐1) has been validated as a urinary biomarker for acute and chronic renal damage. The expression of Kim‐1 mRNA is also activated by acute kidney injury induced by cisplatin in rodents and humans. To date, the measurement of Kim‐1 expression has not fully allowed the detection of in vitro cisplatin nephrotoxicity in immortalized culture cells, such as human kidney‐2 cells and immortalized proximal tubular epithelial cells. Methods We measured the augmentation of Kim‐1 mRNA expression after the addition of cisplatin using immortalized S3 cells established from the kidneys of transgenic mice harboring temperature‐sensitive large T antigen from Simian virus 40. Results A mouse Kim‐1 gene luciferase reporter in conjunction with an Hprt gene reporter detected cisplatin‐induced nephrotoxicity in S3 cells. These two reporter genes were contained in a mouse artificial chromosome, and two luciferases that emitted different wavelengths were used to monitor the respective gene expression. However, the Kim‐1 reporter gene failed to respond to cisplatin in A9 fibroblast cells that contained the same reporter mouse artificial chromosome, suggesting cell type‐specificity for activation of the reporter. Conclusions We report the feasibility of measuring in vitro cisplatin nephrotoxicity using a Kim‐1 reporter gene in S3 cells.
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Affiliation(s)
- Kenji Kokura
- Chromosome Engineering Research Center (CERC), Tottori University, Tottori, Japan.,Division of Human Genome Science, Department of Molecular and Cellular Biology, School of Life Sciences, Faculty of Medicine, Tottori University, Tottori, Japan
| | - Yasushi Kuromi
- Tottori Industrial Promotion Organization, Tottori, Tottori, Japan.,Division of Laboratory Animal Science, Research Center for Bioscience and Technology, Tottori University, Tottori, Japan
| | - Takeshi Endo
- Tottori Industrial Promotion Organization, Tottori, Tottori, Japan
| | - Naohiko Anzai
- Department of Pharmacology and Toxicology, Dokkyo Medical University School of Medicine, Tochigi, Japan.,Department of Pharmacology, Chiba University Graduate School of Medicine, Chiba, Japan
| | - Yasuhiro Kazuki
- Chromosome Engineering Research Center (CERC), Tottori University, Tottori, Japan
| | - Mitsuo Oshimura
- Chromosome Engineering Research Center (CERC), Tottori University, Tottori, Japan
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Endo T, Noda N, Kuromi Y, Kokura K, Kazuki Y, Oshimura M, Ohbayashi T. Evaluation of an Hprt-Luciferase Reporter Gene on a Mammalian Artificial Chromosome in Response to Cytotoxicity. Yonago Acta Med 2016; 59:174-182. [PMID: 27493490 PMCID: PMC4973025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2016] [Accepted: 05/17/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND Hypoxanthine guanine phosphoribosyltransferase (Hprt) is known as a house-keeping gene, and has been used as an internal control for real-time quantitative RT-PCR and various other methods of gene expression analysis. To evaluate the Hprt mRNA levels as a reference standard, we engineered a luciferase reporter driven by a long Hprt promoter and measured its response to cytotoxicity. METHODS We constructed a reporter vector that harbored a phiC31 integrase recognition site and a mouse Hprt promoter fused with green-emitting luciferase (SLG) coding sequence. The Hprt-SLG vector was loaded onto a mouse artificial chromosome containing a multi-integrase platform using phiC31 integrase in mouse A9 cells. We established three independent clones. RESULTS The established cell lines had similar levels of expression of the Hprt-SLG reporter gene. Hprt-SLG activity increased proportionately under growth conditions and decreased under cytotoxic conditions after blasticidin or cisplatin administration. Similar increases and decreases in the SLG luminescent were observed under growth and cytotoxic conditions, respectively, to those in the fluorescent obtained using the commercially available reagent, alamarBlue. CONCLUSION By employing a reliable and stable expression system in a mammalian artificial chromosome, the activity of an Hprt-SLG reporter can reflect cell numbers under cell growth condition and cell viability in the evaluation of cytotoxic conditions.
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Affiliation(s)
- Takeshi Endo
- Tottori Industrial Promotion Organization, Tottori 689-1112, Japan
| | - Natsumi Noda
- Tottori Industrial Promotion Organization, Tottori 689-1112, Japan
| | - Yasushi Kuromi
- Tottori Industrial Promotion Organization, Tottori 689-1112, Japan; ‡Division of Laboratory Animal Science, Research Center for Bioscience and Technology, Tottori University, Yonago 683-8503, Japan
| | - Kenji Kokura
- §Chromosome Engineering Research Center, Tottori University, Yonago 683-8503, Japan
| | - Yasuhiro Kazuki
- §Chromosome Engineering Research Center, Tottori University, Yonago 683-8503, Japan; ||Department of Biomedical Science, Institute of Regenerative Medicine and Biofunction, Tottori University, Yonago 683-8503, Japan; ¶Division of Molecular and Cell Genetics, Department of Molecular and Cellular Biology, School of Life Sciences, Tottori University Faculty of Medicine, Yonago 683-8503, Japan
| | - Mitsuo Oshimura
- §Chromosome Engineering Research Center, Tottori University, Yonago 683-8503, Japan
| | - Tetsuya Ohbayashi
- ‡Division of Laboratory Animal Science, Research Center for Bioscience and Technology, Tottori University, Yonago 683-8503, Japan
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Abstract
The interaction of several 3,6-diaminoacridines with DNAs of various base composition has been studied by steady-state and transient fluorescence measurements. The acridine dyes employed are of the following two classes: class I - proflavine, acriflavine and 10-benzyl proflavine; class II - acridine yellow, 10-methyl acridine yellow and benzoflavine. It is found that the fluorescence decay kinetics follows a single-exponential decay law for free dye and the poly[d(A-T)]-dye complex, while that of the dye bound to DNA obeys a two-exponential decay law. The long lifetime (tau 1) for each complex is almost the same as the lifetime for the poly[d(A-T)]-dye complex, and the amplitude alpha 1 decreases with increasing GC content of DNA. The fluorescence quantum yields (phi F) of dye upon binding to DNA decrease with increasing GC content; the phi F values for class I are nearly zero when bound to poly(dG) X poly(dC), but those for class II are not zero. This is in harmony with the finding that GMP almost completely quenches the fluorescence for class I, whereas a weak fluorescence arises from the GMP-dye complex for class II. The fluorescence spectra of the DNA-dye complexes gradually shift toward longer wavelengths with increasing GC content. In this connection, the fluorescence decay parameters show a dependence on the emission wavelength; alpha 1 decreases with an increase in the emission wavelength. In view of these results, it is proposed that the decay behavior of the DNA-dye complexes has its origin in the heterogeneity of the emitting sites; the long lifetime tau 1 results from the dye bound to AT-AT sites, while the short lifetime tau 2 is attributable to the dye bound in the vicinity of GC pairs. Since GC pairs almost completely quench the fluorescence for class I, partly intercalated or externally bound dye molecules may play an important role in the component tau 2.
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