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Wu Y, Pates S, Pauly D, Zhang X, Fu D. Rapid growth in a large Cambrian apex predator. Natl Sci Rev 2024; 11:nwad284. [PMID: 38312385 PMCID: PMC10833464 DOI: 10.1093/nsr/nwad284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 10/09/2023] [Accepted: 11/02/2023] [Indexed: 02/06/2024] Open
Abstract
Despite the importance of ontogenetic data on early diverging euarthropods to our understanding of the ecology and evolution of past life, the data are distinctly lacking, as reconstructing life histories of fossil animals is often challenging. Here we report the growth trajectory of frontal appendages of the apex predator Amplectobelua symbrachiata, one of the most common radiodont arthropods from the early Cambrian Chengjiang biota (c. 520 Ma) of China. Analysis of 432 specimens (9.1-137.1 mm length; 1.3-25.6 mm height) reveals that appendages grew isometrically, with an estimated maximum size of the whole animal of c. 90 cm. Individuals grew rapidly compared to extant arthropods, as assessed using the electronic length-frequency analysis (ELEFAN) approach. Therefore, we show that the Cambrian apex predator A. symbrachiata was an extremely fast-growing arthropod, with an unusual life history strategy that formed as part of the escalatory 'arms race' that shaped the Cambrian explosion over 500 Ma.
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Affiliation(s)
- Yu Wu
- State Key Laboratory of Continental Dynamics and Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi’an 710069, China
- Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK
| | - Stephen Pates
- Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK
| | - Daniel Pauly
- Institute for the Oceans and Fisheries, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Xingliang Zhang
- State Key Laboratory of Continental Dynamics and Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi’an 710069, China
- Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Dongjing Fu
- State Key Laboratory of Continental Dynamics and Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi’an 710069, China
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Wei ZG, Zhang XD, Fan XG, Qian Y, Liu F, Wu FX. pathMap: a path-based mapping tool for long noisy reads with high sensitivity. Brief Bioinform 2024; 25:bbae107. [PMID: 38517696 PMCID: PMC10959152 DOI: 10.1093/bib/bbae107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 12/25/2023] [Accepted: 02/28/2024] [Indexed: 03/24/2024] Open
Abstract
With the rapid development of single-molecule sequencing (SMS) technologies, the output read length is continuously increasing. Mapping such reads onto a reference genome is one of the most fundamental tasks in sequence analysis. Mapping sensitivity is becoming a major concern since high sensitivity can detect more aligned regions on the reference and obtain more aligned bases, which are useful for downstream analysis. In this study, we present pathMap, a novel k-mer graph-based mapper that is specifically designed for mapping SMS reads with high sensitivity. By viewing the alignment chain as a path containing as many anchors as possible in the matched k-mer graph, pathMap treats chaining as a path selection problem in the directed graph. pathMap iteratively searches the longest path in the remaining nodes; more candidate chains with high quality can be effectively detected and aligned. Compared to other state-of-the-art mapping methods such as minimap2 and Winnowmap2, experiment results on simulated and real-life datasets demonstrate that pathMap obtains the number of mapped chains at least 11.50% more than its closest competitor and increases the mapping sensitivity by 17.28% and 13.84% of bases over the next-best mapper for Pacific Biosciences and Oxford Nanopore sequencing data, respectively. In addition, pathMap is more robust to sequence errors and more sensitive to species- and strain-specific identification of pathogens using MinION reads.
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Affiliation(s)
- Ze-Gang Wei
- School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
- Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada
| | - Xiao-Dan Zhang
- School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Xing-Guo Fan
- School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Yu Qian
- School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Fei Liu
- School of Physics and Opto-Electronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Fang-Xiang Wu
- Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada
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Guo R, Chen C, Bannenberg LJ, Wang H, Liu H, Yu M, Sofer Z, Lei Z, Wang X. Interfacial Designs of MXenes for Mild Aqueous Zinc-Ion Storage. Small Methods 2023; 7:e2201683. [PMID: 36932899 DOI: 10.1002/smtd.202201683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 02/16/2023] [Indexed: 06/18/2023]
Abstract
Limited Li resources, high cost, and safety risks of using organic electrolytes have stimulated a strong motivation to develop non-Li aqueous batteries. Aqueous Zn-ion storage (ZIS) devices offer low-cost and high-safety solutions. However, their practical applications are at the moment restricted by their short cycle life arising mainly from irreversible electrochemical side reactions and processes at the interfaces. This review sums up the capability of using 2D MXenes to increase the reversibility at the interface, assist the charge transfer process, and thereby improve the performance of ZIS. First, they discuss the ZIS mechanism and irreversibility of typical electrode materials in mild aqueous electrolytes. Then, applications of MXenes in different ZIS components are highlighted, including as electrodes for Zn2+ intercalation, protective layers of Zn anode, hosts for Zn deposition, substrates, and separators. Finally, perspectives are put forward on further optimizing MXenes to improve the ZIS performance.
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Affiliation(s)
- Rui Guo
- Department of Radiation Science and Technology, Faculty of Applied Sciences, Delft University of Technology, Delft, 2629JB, The Netherlands
- Key Laboratory of Applied Surface and Colloid Chemistry, MOE, Shaanxi Engineering Lab for Advanced Energy Technology, Shaanxi Key Laboratory for Advanced Energy Devices, School of Materials Science and Engineering, Shaanxi Normal University, Xi'an, Shaanxi, 710119, China
| | - Chaofan Chen
- Department of Radiation Science and Technology, Faculty of Applied Sciences, Delft University of Technology, Delft, 2629JB, The Netherlands
| | - Lars J Bannenberg
- Department of Radiation Science and Technology, Faculty of Applied Sciences, Delft University of Technology, Delft, 2629JB, The Netherlands
| | - Hao Wang
- Department of Radiation Science and Technology, Faculty of Applied Sciences, Delft University of Technology, Delft, 2629JB, The Netherlands
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University, Shanghai, 201620, China
| | - Haozhe Liu
- Department of Radiation Science and Technology, Faculty of Applied Sciences, Delft University of Technology, Delft, 2629JB, The Netherlands
| | - Minghao Yu
- Faculty of Chemistry and Food Chemistry, Center for Advancing Electronics Dresden Technische Universität Dresden Modulgebäude, 01217, Dresden, Germany
| | - Zdenek Sofer
- Institute of Chemical Technology, University of Chemistry and Technology Prague, Prague 6, 16628, Czech Republic
| | - Zhibin Lei
- Key Laboratory of Applied Surface and Colloid Chemistry, MOE, Shaanxi Engineering Lab for Advanced Energy Technology, Shaanxi Key Laboratory for Advanced Energy Devices, School of Materials Science and Engineering, Shaanxi Normal University, Xi'an, Shaanxi, 710119, China
| | - Xuehang Wang
- Department of Radiation Science and Technology, Faculty of Applied Sciences, Delft University of Technology, Delft, 2629JB, The Netherlands
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Zhang M, Wu Y, Lin W, Ma J, Wu Y, Fu D. Amplectobeluid Radiodont Guanshancaris gen. nov. from the Lower Cambrian (Stage 4) Guanshan Lagerstätte of South China: Biostratigraphic and Paleobiogeographic Implications. Biology (Basel) 2023; 12:biology12040583. [PMID: 37106783 PMCID: PMC10136193 DOI: 10.3390/biology12040583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 04/06/2023] [Accepted: 04/07/2023] [Indexed: 04/29/2023]
Abstract
Radiodonta, an extinct stem-euarthropod group, has been considered as the largest predator of Cambrian marine ecosystems. As one of the radiodont-bearing Konservat-Lagerstätten, the Guanshan biota (South China, Cambrian Stage 4) has yielded a diverse assemblage of soft-bodied and biomineralized taxa that are exclusive to this exceptional deposit. "Anomalocaris" kunmingensis, the most abundant radiodont in the Guanshan biota, was originally assigned to Anomalocaris within the Anomalocarididae. Despite this taxon being formally assigned to the family Amplectobeluidae more recently, its generic assignment remains uncertain. Here, we present new materials of "Anomalocaris" kunmingensis from the Guanshan biota, and reveal that the frontal appendages possess two enlarged endites; all endites bear one posterior auxiliary spine and up to four anterior auxiliary spines; three robust dorsal spines and one terminal spine protrude from the distal part. These new observations, allied with anatomical features illustrated by previous studies, allow us to assign this taxon to a new genus, Guanshancaris gen. nov. Brachiopod shell bearing embayed injury and incomplete trilobites, associated with frontal appendages in our specimens, to some extent confirm Guanshancaris as a possible durophagous predator. The distribution of amplectobeluids demonstrates that this group is restricted to Cambrian Stage 3 to Drumian, and occurs across South China and Laurentia within the tropics/subtropics belt. Moreover, the amount and abundance of amplectobeluids evidently decreases after the Early-Middle Cambrian boundary, which indicates its possible preference for shallow water, referring to its paleoenvironmental distribution and may be influenced by geochemical, tectonic, and climatic variation.
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Affiliation(s)
- Mingjing Zhang
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi'an 710069, China
- Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi'an 710069, China
| | - Yu Wu
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi'an 710069, China
- Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi'an 710069, China
| | - Weiliang Lin
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi'an 710069, China
- Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi'an 710069, China
| | - Jiaxin Ma
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi'an 710069, China
- Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi'an 710069, China
| | - Yuheng Wu
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi'an 710069, China
- Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi'an 710069, China
| | - Dongjing Fu
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi'an 710069, China
- Shaanxi Key Laboratory of Early Life and Environment, Department of Geology, Northwest University, Xi'an 710069, China
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Gao X, Du J, Gao L, Hao D, Hui H, He B, Yan L. Risk factors for bone cement displacement after percutaneous vertebral augmentation for osteoporotic vertebral compression fractures. Front Surg 2022; 9:947212. [PMID: 35965863 PMCID: PMC9366098 DOI: 10.3389/fsurg.2022.947212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 07/14/2022] [Indexed: 12/01/2022] Open
Abstract
Purpose To explore the risk factors of bone cement displacement after percutaneous vertebral augmentation (PVA) in patients with osteoporotic vertebral compression fracture (OVCF). Methods We retrospectively reviewed the records of 1,538 patients with OVCF treated with percutaneous vertebroplasty (PVP) or percutaneous vertebroplasty (PKP) from January 2016 to June 2021. Patients were divided into bone cement displacement group (n = 78) and bone cement non-displacement group (n = 1,460) according to the radiographic images. Possible risk factors for bone cement displacement were noted, including age, gender, body mass index (BMI), bone mineral density (BMD), underlying disease, number of fractured vertebrae, involved vertebral segment, surgical method, surgical approach, vertebral height, Cobb angle, cement leakage, the viscosity of bone cement, bone cement diffuse ratio, degree of bone cement interweaving, sagittal bone cement placement, targeted location of bone cement, the distance between the bone cement and the upper and lower endplates, the time of wearing brace and postoperative osteoporosis treatment. Risk factors were identified with univariate and multivariate logistic regressions and the discrimination ability of the predictive indicators was evaluated using area under the curve (AUC) of the receiver operating characteristic (ROC). Results In multivariate regression, independent risk factors for bone cement displacement included: high restoration of Cobb angle (OR = 2.019, 95%[CI] 1.545–4.852, P < 0.001), cement leakage (anterior edge) (OR = 1.727, 95%[CI] 1.05–2.20, P < 0.001), small degree of bone cement interweaving (OR = 1.917, 95%[CI] 1.129–2.747, P < 0.001), non-targeted location of bone cement (OR = 2.323, 95%[CI] 1.645–4.134, P < 0.001), short duration of brace wearing (OR = 3.207, 95%[CI] 2.036–4.348, P < 0.001) and postoperative osteoporosis treatment (OR = 0.422, 95% CI = 0.323–0.547, P < 0.001). The AUCs for the high restoration of Cobb angle, cement leakage (anterior edge), small degree of bone cement interweaving, non-targeted location of bone cement, short duration of brace wearing and non-postoperative osteoporosis treatment were 0.784 (95% CI, 0.747–0.821), 0.811 (95% CI 0.764–0.859), 0.917 (95%CI 0.864–0.970), 0.610 (95%CI 0.552–0.669), 0.854 (95%CI 0.816–0.892) and 0.756 (95% CI, 0.712–0.800), respectively. Conclusion High restoration of Cobb angle, cement leakage (anterior edge), small degree of bone cement interweaving, non-targeted location of bone cement, short duration of brace wearing and non-postoperative osteoporosis treatment were the independent risk factors of bone cement displacement after PVA.
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Affiliation(s)
- Xiangcheng Gao
- Department of Spine Surgery, Honghui Hospital, Xi’an Jiaotong University, Xi’an, China
- Medical College, Yan'an University, Yan'an, China
| | - Jinpeng Du
- Department of Spine Surgery, Honghui Hospital, Xi’an Jiaotong University, Xi’an, China
| | - Lin Gao
- Department of Spine Surgery, Honghui Hospital, Xi’an Jiaotong University, Xi’an, China
| | - Dingjun Hao
- Department of Spine Surgery, Honghui Hospital, Xi’an Jiaotong University, Xi’an, China
| | - Hua Hui
- Department of Spine Surgery, Honghui Hospital, Xi’an Jiaotong University, Xi’an, China
| | - Baorong He
- Department of Spine Surgery, Honghui Hospital, Xi’an Jiaotong University, Xi’an, China
- Correspondence: Liang Yan Baorong He
| | - Liang Yan
- Department of Spine Surgery, Honghui Hospital, Xi’an Jiaotong University, Xi’an, China
- Correspondence: Liang Yan Baorong He
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