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Liu Z, Yuan Y, Zhang C, Zhu Q, Xu X, Yuan M, Tan W. Hierarchical classification of early microscopic lung nodule based on cascade network. Health Inf Sci Syst 2024; 12:13. [PMID: 38404714 PMCID: PMC10891040 DOI: 10.1007/s13755-024-00273-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Accepted: 01/08/2024] [Indexed: 02/27/2024] Open
Abstract
Purpose Early-stage lung cancer is typically characterized clinically by the presence of isolated lung nodules. Thousands of cases are examined each year, and one case usually contains numerous lung CT slices. Detecting and classifying early microscopic lung nodules is demanding due to their diminutive dimensions and restricted characterization capabilities. Therefore, a lung nodule classification model that performs well and is sensitive to microscopic lung nodules is needed to accurately classify lung nodules. Methods This paper uses the Resnet34 network as a basic classification model. A new cascade lung nodule classification method is proposed to classify lung nodules into 6 classes instead of the traditional 2 or 4 classes. It can effectively classify six different nodule types including ground-glass and solid nodules, benign and malignant nodules, and nodules with predominantly ground-glass or solid components. Results In this paper, the traditional multi-classification method and the cascade classification method proposed in this paper were tested using real lung nodule data collected in the clinic. The test results demonstrate that the cascade classification method in this study achieves an accuracy of 80.04% , outperforming the conventional multi-classification approach. Conclusions Different from the existing methods for categorizing the benign and malignant nature of lung nodules, the approach presented in this paper can classify lung nodules into 6 categories more accurately. At the same time, This paper proposes a rapid, precise, and dependable approach for classifying six distinct categories of lung nodules, which increases the accuracy categorization compared with the traditional multivariate categorization method.
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Affiliation(s)
- Ziang Liu
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Ye Yuan
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Cui Zhang
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Quan Zhu
- Department of Thoracic Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029 China
| | - Xinfeng Xu
- Department of Thoracic Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029 China
| | - Mei Yuan
- Department of Thoracic Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029 China
| | - Wenjun Tan
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
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Chi J, Zhao J, Wang S, Yu X, Wu C. LGDNet: local feature coupling global representations network for pulmonary nodules detection. Med Biol Eng Comput 2024:10.1007/s11517-024-03043-w. [PMID: 38429443 DOI: 10.1007/s11517-024-03043-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 02/06/2024] [Indexed: 03/03/2024]
Abstract
Detection of suspicious pulmonary nodules from lung CT scans is a crucial task in computer-aided diagnosis (CAD) systems. In recent years, various deep learning-based approaches have been proposed and demonstrated significant potential for addressing this task. However, existing deep convolutional neural networks exhibit limited long-range dependency capabilities and neglect crucial contextual information, resulting in reduced performance on detecting small-size nodules in CT scans. In this work, we propose a novel end-to-end framework called LGDNet for the detection of suspicious pulmonary nodules in lung CT scans by fusing local features and global representations. To overcome the limited long-range dependency capabilities inherent in convolutional operations, a dual-branch module is designed to integrate the convolutional neural network (CNN) branch that extracts local features with the transformer branch that captures global representations. To further address the issue of misalignment between local features and global representations, an attention gate module is proposed in the up-sampling stage to selectively combine misaligned semantic data from both branches, resulting in more accurate detection of small-size nodules. Our experiments on the large-scale LIDC dataset demonstrate that the proposed LGDNet with the dual-branch module and attention gate module could significantly improve the nodule detection sensitivity by achieving a final competition performance metric (CPM) score of 89.49%, outperforming the state-of-the-art nodule detection methods, indicating its potential for clinical applications in the early diagnosis of lung diseases.
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Affiliation(s)
- Jianning Chi
- Faculty of Robot Science and Engineering, Northeastern University, Shenyang, Liaoning, 110167, China.
- Key Laboratory of Intelligent Computing in Medical Image of Ministry of Education, Northeastern University, Shenyang, Liaoning, 110167, China.
| | - Jin Zhao
- Faculty of Robot Science and Engineering, Northeastern University, Shenyang, Liaoning, 110167, China
| | - Siqi Wang
- Faculty of Robot Science and Engineering, Northeastern University, Shenyang, Liaoning, 110167, China
| | - Xiaosheng Yu
- Faculty of Robot Science and Engineering, Northeastern University, Shenyang, Liaoning, 110167, China
| | - Chengdong Wu
- Faculty of Robot Science and Engineering, Northeastern University, Shenyang, Liaoning, 110167, China
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Chi J, Sun Z, Tian S, Wang H, Wang S. A Hybrid Framework of Dual-Domain Signal Restoration and Multi-depth Feature Reinforcement for Low-Dose Lung CT Denoising. J Imaging Inform Med 2024:10.1007/s10278-023-00934-6. [PMID: 38424278 DOI: 10.1007/s10278-023-00934-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 09/05/2023] [Accepted: 09/06/2023] [Indexed: 03/02/2024]
Abstract
Low-dose computer tomography (LDCT) has been widely used in medical diagnosis. Various denoising methods have been presented to remove noise in LDCT scans. However, existing methods cannot achieve satisfactory results due to the difficulties in (1) distinguishing the characteristics of structures, textures, and noise confused in the image domain, and (2) representing local details and global semantics in the hierarchical features. In this paper, we propose a novel denoising method consisting of (1) a 2D dual-domain restoration framework to reconstruct noise-free structure and texture signals separately, and (2) a 3D multi-depth reinforcement U-Net model to further recover image details with enhanced hierarchical features. In the 2D dual-domain restoration framework, the convolutional neural networks are adopted in both the image domain where the image structures are well preserved through the spatial continuity, and the sinogram domain where the textures and noise are separately represented by different wavelet coefficients and processed adaptively. In the 3D multi-depth reinforcement U-Net model, the hierarchical features from the 3D U-Net are enhanced by the cross-resolution attention module (CRAM) and dual-branch graph convolution module (DBGCM). The CRAM preserves local details by integrating adjacent low-level features with different resolutions, while the DBGCM enhances global semantics by building graphs for high-level features in intra-feature and inter-feature dimensions. Experimental results on the LUNA16 dataset and 2016 NIH-AAPM-Mayo Clinic LDCT Grand Challenge dataset illustrate the proposed method outperforms the state-of-the-art methods on removing noise from LDCT images with clear structures and textures, proving its potential in clinical practice.
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Affiliation(s)
- Jianning Chi
- Faculty of Robot Science and Engineering, Northeastern University, Zhihui Street, Shenyang, 110169, Liaoning, China.
- Key Laboratory of Intelligent Computing in Medical Image of Ministry of Education, Northeastern University, Zhihui Street, Shenyang, 110169, Liaoning, China.
| | - Zhiyi Sun
- Faculty of Robot Science and Engineering, Northeastern University, Zhihui Street, Shenyang, 110169, Liaoning, China
| | - Shuyu Tian
- Graduate School, Dalian Medical University, Lyushunnan, Dalian, 116000, Liaoning, China
| | - Huan Wang
- Faculty of Robot Science and Engineering, Northeastern University, Zhihui Street, Shenyang, 110169, Liaoning, China
| | - Siqi Wang
- Faculty of Robot Science and Engineering, Northeastern University, Zhihui Street, Shenyang, 110169, Liaoning, China
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Zhou Q, Tan W, Li Q, Li B, Zhou L, Liu X, Yang J, Zhao D. A new segment method for pulmonary artery and vein. Health Inf Sci Syst 2023; 11:47. [PMID: 37810417 PMCID: PMC10558422 DOI: 10.1007/s13755-023-00245-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 09/01/2023] [Indexed: 10/10/2023] Open
Abstract
Accurate differentiation between pulmonary arteries and veins (A/V) holds pivotal importance in the realm of diagnosing and treating pulmonary ailments. This study presents a new approach that leverages grayscale differences between A/V. Distinctions are measured using median and mean grayscale values within the vessel area. Initially, adherent regions are removed based on vessel structure. The trunk regions are segmented using gray level information near the heart region of the lung boundary. Incorrectly segmented vessels are corrected based on connectivity. For distal lung vessels, a similar distance field is established using a graph-cut method. Experimental results show the algorithm's superior segmentation accuracy, achieving 97.26% compared to the CNN-based average accuracy of 91.67%. Error branches are more concentrated, aiding subsequent manual and automatic correction. This demonstrates the algorithm's effective segmentation of pulmonary A/V.
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Affiliation(s)
- Qinghua Zhou
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Wenjun Tan
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Qingya Li
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Baoting Li
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Luyu Zhou
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Xin Liu
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Jinzhu Yang
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
| | - Dazhe Zhao
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, 110189 China
- College of Computer Science and Engineering, Northeastern University, Shenyang, 110189 China
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Liu R, Liu S, Wu S, Xia M, Liu W, Wang L, Dong M, Niu W. Milk-Derived Small Extracellular Vesicles Promote Osteogenic Differentiation and Inhibit Inflammation via microRNA-21. Int J Mol Sci 2023; 24:13873. [PMID: 37762176 PMCID: PMC10531249 DOI: 10.3390/ijms241813873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 09/02/2023] [Accepted: 09/07/2023] [Indexed: 09/29/2023] Open
Abstract
Chronic apical periodontitis (CAP) is a disease with characteristics of inflammation and bone loss. In this study, our objective was to examine the function of small extracellular vesicles (sEVs) obtained from milk in encouraging osteogenic differentiation and inhibiting inflammation by miR-21 in CAP. The expression of miR-21 was detected using qRT-PCR in human CAP samples. The impact of miR-21 on the process of osteogenic differentiation was investigated using CCK-8, qRT-PCR, immunofluorescence staining, and Western blot analysis. The evaluation of RAW 264.7 cell polarization and the assessment of inflammatory factor expression were conducted through qRT-PCR. The influence of sEVs on MC3T3-E1 cells and RAW 264.7 cells was examined, with a particular emphasis on the involvement of miR-21. In human CAP samples, a decrease in miR-21 expression was observed. MiR-21 increased the expression of osteogenesis-related genes and M2 polarization genes while decreasing the expression of M1 polarization genes and inflammatory cytokines. Treatment with milk-derived sEVs also promoted osteogenesis and M2 polarization while inhibiting M1 polarization and inflammation. Conversely, the addition of miR-21 inhibitors resulted in opposite effects. Our results indicated that sEVs derived from milk had a positive effect on bone formation and activation of anti-inflammatory (M2) macrophages and simultaneously reduced inflammation by regulating miR-21 in CAP.
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Affiliation(s)
| | | | | | | | | | | | - Ming Dong
- School of Stomatology, Dalian Medical University, Dalian 116044, China
| | - Weidong Niu
- School of Stomatology, Dalian Medical University, Dalian 116044, China
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