An autofocusing method for dynamic surface-enhanced Raman spectroscopy detection realized by optimized hill-climbing algorithm with long time stable hotspots

In the manual dynamic surface-enhanced Raman spectroscopy (D-SERS) detection process, it is difficult to focus on sample drop due to the constantly changing hotspot and easy judgment method. In this paper, we proposed an automatic focusing method based on long time stable hotspot with aid of optimization of hill-climbing algorithm and achieved on a designed device. First, set up a high temperature accelerating evaporation process to obtain hotspot and then cool to a low temperature rapidly to maintain it. Then, the spectral intensity was used as a focus of feedback signal in optimized hill-climbing algorithm to drive the sample stage to move up and down to adjust the depth of the laser on the samples to realize automatic focusing. As a result, the hotspot can be maintained for 5 min, and the autofocusing result can be achieved within 9 s, while the sensitivity was improved with two orders of magnitude in D-SERS detection of crystal violet (CV) compared with manual focusing.

Simulation and analysis of variable numerical aperture wide-field microscopy for telecentricity with constant resolution

In this work, we propose simulation and analysis of a novel combination of a variable numerical aperture wide-field microscope objective with an Electrically Tunable Lens (ETL) for axial scanning with a telecentric image space. This work resolves the challenges of the conventional ETL based wide-field microscopic systems viz. variable magnification, field-of-view (FOV), an inconsistent lateral and axial resolution. The proposed combination performs the tuning of the object plane by changing ETL current and effectively modifies the object space numerical aperture using an aperture controller to provide a stationary telecentric image plane. Moreover, with the proposed combination, the lateral resolution of the system is preserved over an axial range of 7.586mm with a magnification error of 2.55 %. The proposed work witnesses the advantages of providing fast axial scanning, extended axial scanning range, autofocusing, invariant magnification, constant FOV, and constant resolution along with a compact optical setup.

A practical criterion for focusing of unstained cell samples using a digital holographic microscope

Digital holographic microscopy (DHM) is an important technique that may be used for quantitative phase imaging of unstained biological cell samples. Since the DHM technology is not commonly used in clinics or bioscience research labs, at present there is no well-accepted focusing criterion for unstained samples that users can follow while recording image plane digital holograms of cells. The usual sharpness metrics that are useful for auto-focusing of stained cells do not work well for unstained cells as there is no amplitude contrast. In this work, we report a practical method for estimating the best focus plane for unstained cells in the digital hologram domain. The method is based on an interesting observation that for the best focus plane the fringe pattern associated with individual unstained cells predominantly shows phase modulation effect in the form of bending of fringes and minimal amplitude modulation. This criterion when applied to unstained red blood cells shows that the central dip in the doughnut-like phase profile of cells is maximal in this plane. The proposed methodology is helpful for standardizing the usage of DHM technology across different users and application development efforts. LAY DESCRIPTION: Digital holographic microscopy (DHM) is slowly but steadily becoming an important microscopy modality and gaining acceptability for basic bio-science research as well as clinical usage. One of the important features of DHM is that it allows users to perform quantitative imaging of unstained transparent cells. Instead of using dyes or fluorescent labelling, DHM systems use quantitative phase as a contrast mechanism which depends on the natural refractive index variation within the cell samples. Since minimal wet lab processing is required in order to image cell samples with a DHM, cells can be imaged in their natural state. While DHM is gaining popularity among users, the imaging protocols across the labs or users need to be standardized in order to make sure that the same quantitative phase parameters are used for tasks such as quantitative phased based cell classification. One of the important operational tasks for any microscopy work is to focus the sample under study. While focusing comes naturally to users of brightfield microscopes based on image contrast, the focusing is not straightforward when samples are unstained so that they do not offer any amplitude contrast. When performing quantitative phase imaging, defocus can actually change the phase profile of the cell due to near-zone (Fresnel) diffraction effects. So unless a standardized focusing methodology is used, it will be difficult for multiple DHM users (potentially at different sites) to agree on quantitative results out of their phase images. DHM literature has prior works which perform numerical focusing of recovered complex wave-field in the hologram plane to find the best focus plane. However such methods are not user friendly and do not allow user the same focusing experience as in a brightfield microscope. The numerical focusing is therefore a reasonably good method for an optics researcher but not necessarily so for a microscopy technician looking at cell samples with a DHM system in a clinical setting. The present work provides a simple focusing criterion for unstained samples that works directly in the hologram domain. The technique is based on an interesting observation that the when an unstained cell sample is in the best-focus plane, its corresponding hologram (or fringe pattern) predominantly shows phase modulation manifested by bending of fringes at the location of the cell. This criterion can be converted into a simple numerical method as we have used to find the best-focus plane using a stack of through focus holograms. We believe that the technique can be used manually by visually observing the holograms or can be converted to an auto-focus algorithm for a motorized DHM system.