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Thiengo CC, Galindo FS, Bernardes JVS, da Rocha LO, da Silva CD, Burak DL, Lavres J. Nitrogen fertilization regulates crosstalk between marandu palisadegrass and Herbaspirillum seropedicae: An investigation based on 15N isotopic analysis and root morphology. Environ Res 2024; 249:118345. [PMID: 38331147 DOI: 10.1016/j.envres.2024.118345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 01/16/2024] [Accepted: 01/27/2024] [Indexed: 02/10/2024]
Abstract
Strategies seeking to increase the use efficiency of nitrogen (N) fertilizers and that benefit plant growth through multiple mechanisms can reduce production costs and contribute to more sustainable agriculture free of polluting residues. Under controlled conditions, we investigated the compatibility between foliar inoculation with an endophytic diazotrophic bacterium (Herbaspirillum seropedicae HRC54) at control and low, medium and high N fertilization levels (0, 25, 50 and 100 mg of N kg-1 as urea, respectively) in Marandu palisadegrass. Common procedures in our research field (biometric and nutritional assessments) were combined with isotopic techniques (natural abundance - δ15N‰ and 15N isotope dilution) and root scanning to determine the contribution of fixed N and recovery of N fertilizer by the grass. Overall, the combined use of 15N isotopic techniques revealed that inoculation not only improved the recovery of applied N-urea from the soil but also provided fixed nitrogen to Marandu palisade grass, resulting in an increase in the total accumulated N. When inoculated plants grew at control and low levels of N, a positive cascade effect encompassing root growth stimulation (nodes of smaller diameter roots), better soil and fertilizer resource exploitation and increased forage production was observed. In contrast, increasing N reduced the contributions of N fixed by H. seropedicae from 21.5% at the control level to 8.6% at the high N level. Given the minimal to no observed growth promotion, this condition was deemed inhibitory to the positive effects of H. seropedicae. We discuss how to make better use of H. seropedicae inoculation in Marandu palisadegrass, albeit on a small scale, thus contributing to a more rational and efficient use of N fertilizers. Finally, we pose questions for future investigations based on 15N isotopic techniques under field conditions, which have great applicability potential.
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Affiliation(s)
- Cassio Carlette Thiengo
- Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13418-900, Brazil.
| | - Fernando Shintate Galindo
- Faculty of Agricultural and Technological Sciences, São Paulo State University, Dracena, 17900-000, Brazil.
| | | | - Leticia Oliveira da Rocha
- Nucleus for the Development of Biological Inputs for Agriculture, North Fluminense State University Darcy Ribeiro, Campos dos Goytacazes, 28013-602, Brazil.
| | - Carlos Diego da Silva
- Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13418-900, Brazil.
| | - Diego Lang Burak
- Center for Agricultural Sciences and Engineering, Federal University of Espírito Santo, Alegre, 29500-000, Brazil.
| | - José Lavres
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, 13416-000, Brazil.
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Pessoa DDV, Dos-Santos CM, Vidal MS, Baldani JI, Tadra-Sfeir MZ, de Souza EM, Simoes-Araujo JL. Herbaspirillum seropedicae strain HRC54 expression profile in response to sugarcane apoplastic fluid. 3 Biotech 2021; 11:292. [PMID: 34136329 DOI: 10.1007/s13205-021-02848-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 05/17/2021] [Indexed: 10/21/2022] Open
Abstract
Bacterial transcriptome profiling in the presence of plant fluids or extracts during microbial growth may provide relevant information on plant-bacteria interactions. Here, RNA sequencing (RNA-Seq) was used to determine the transcriptomic profile of Herbaspirillum seropedicae strain HRC54 at the early stages of response to sugarcane apoplastic fluid. Differentially expressed gene (DEG) analysis was performed using the DESeq2 and edgeR packages, followed by functional annotation using Blast2GO and gene ontology enrichment analysis using the COG and KEGG databases. After 2 h of sugarcane apoplastic fluid addition to the H. seropedicae HRC54 culture, respectively, 44 and 45 genes were upregulated and downregulated. These genes were enriched in bacterial metabolism (e.g., oxidoreductase and transferase), ABC transporters, motility, secretion systems, and signal transduction. RNA-Seq expression profiles of 12 genes identified in data analyses were verified by RT-qPCR. The results suggested that H. seropedicae HRC54 recognized sugarcane apoplastic fluid as the host signal, and some DEGs were closely involved at the early stages of the establishment of plant-bacteria interactions. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s13205-021-02848-y.
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Carvalho TLG, Ballesteros HGF, Thiebaut F, Ferreira PCG, Hemerly AS. Nice to meet you: genetic, epigenetic and metabolic controls of plant perception of beneficial associative and endophytic diazotrophic bacteria in non-leguminous plants. Plant Mol Biol 2016; 90:561-74. [PMID: 26821805 DOI: 10.1007/s11103-016-0435-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2015] [Accepted: 01/07/2016] [Indexed: 05/02/2023]
Abstract
A wide range of rhizosphere diazotrophic bacteria are able to establish beneficial associations with plants, being able to associate to root surfaces or even endophytically colonize plant tissues. In common, both associative and endophytic types of colonization can result in beneficial outcomes to the plant leading to plant growth promotion, as well as increase in tolerance against biotic and abiotic stresses. An intriguing question in such associations is how plant cell surface perceives signals from other living organisms, thus sorting pathogens from beneficial ones, to transduce this information and activate proper responses that will finally culminate in plant adaptations to optimize their growth rates. This review focuses on the recent advances in the understanding of genetic and epigenetic controls of plant-bacteria signaling and recognition during beneficial associations with associative and endophytic diazotrophic bacteria. Finally, we propose that "soil-rhizosphere-rhizoplane-endophytes-plant" could be considered as a single coordinated unit with dynamic components that integrate the plant with the environment to generate adaptive responses in plants to improve growth. The homeostasis of the whole system should recruit different levels of regulation, and recognition between the parties in a given environment might be one of the crucial factors coordinating these adaptive plant responses.
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Affiliation(s)
- T L G Carvalho
- Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica Leopoldo de Meis, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Bl. L-29ss, Cidade Universitária, Rio de Janeiro, RJ, CEP: 21941-599, Brazil
| | - H G F Ballesteros
- Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica Leopoldo de Meis, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Bl. L-29ss, Cidade Universitária, Rio de Janeiro, RJ, CEP: 21941-599, Brazil
| | - F Thiebaut
- Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica Leopoldo de Meis, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Bl. L-29ss, Cidade Universitária, Rio de Janeiro, RJ, CEP: 21941-599, Brazil
| | - P C G Ferreira
- Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica Leopoldo de Meis, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Bl. L-29ss, Cidade Universitária, Rio de Janeiro, RJ, CEP: 21941-599, Brazil
| | - A S Hemerly
- Laboratório de Biologia Molecular de Plantas, Instituto de Bioquímica Médica Leopoldo de Meis, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho, 373, Bl. L-29ss, Cidade Universitária, Rio de Janeiro, RJ, CEP: 21941-599, Brazil.
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