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Kost V, Sukhov D, Ivanov I, Kasheverov I, Ojomoko L, Shelukhina I, Mozhaeva V, Kudryavtsev D, Feofanov A, Ignatova A, Utkin Y, Tsetlin V. Comparison of Conformations and Interactions with Nicotinic Acetylcholine Receptors for E. coli-Produced and Synthetic Three-Finger Protein SLURP-1. Int J Mol Sci 2023; 24:16950. [PMID: 38069271 PMCID: PMC10707033 DOI: 10.3390/ijms242316950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 11/10/2023] [Accepted: 11/13/2023] [Indexed: 12/18/2023] Open
Abstract
SLURP-1 is a three-finger human protein targeting nicotinic acetylcholine receptors (nAChRs). The recombinant forms of SLURP-1 produced in E. coli differ in added fusion fragments and in activity. The closest in sequence to the naturally occurring SLURP-1 is the recombinant rSLURP-1, differing by only one additional N-terminal Met residue. sSLURP-1 can be prepared by peptide synthesis and its amino acid sequence is identical to that of the natural protein. In view of recent NMR analysis of the conformational mobility of rSLURP-1 and cryo-electron microscopy structures of complexes of α-bungarotoxin (a three-finger snake venom protein) with Torpedo californica and α7 nAChRs, we compared conformations of sSLURP-1 and rSLURP-1 by Raman spectroscopy and CD-controlled thermal denaturation, analyzed their competition with α-bungarotoxin for binding to the above-mentioned nAChRs, compared the respective receptor complexes with computer modeling and compared their inhibitory potency on the α9α10 nAChR. The CD revealed a higher thermostability of sSLURP-1; some differences between sSLURP-1 and rSLURP-1 were observed in the regions of disulfides and tyrosine residues by Raman spectroscopy, but in binding, computer modeling and electrophysiology, the proteins were similar. Thus, sSLURP-1 and rSLURP-1 with only one additional Met residue appear close in structure and functional characteristics, being appropriate for research on nAChRs.
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Affiliation(s)
- Vladimir Kost
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Dmitry Sukhov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Igor Ivanov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Igor Kasheverov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Lucy Ojomoko
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Irina Shelukhina
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Vera Mozhaeva
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
- Prokhorov General Physics Institute of the Russian Academy of Sciences, 119991 Moscow, Russia
| | - Denis Kudryavtsev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
- Department of Biology and General Genetics, I.M. Sechenov First Moscow State Medical University, 8, bldg. 2 Trubetskaya Str., 119048 Moscow, Russia
| | - Alexey Feofanov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Anastasia Ignatova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Yuri Utkin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
| | - Victor Tsetlin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia; (V.K.); (D.S.); (I.I.); (I.K.); (L.O.); (I.S.); (V.M.); (D.K.); (A.F.); (Y.U.)
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