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Delourme D, Brémaud L, Plazanet I, Pélissier P, Label P, Boizot N, Breton C, Durand S, Costa G. Transcriptomic monitoring of Douglas-fir heartwood formation. BMC Genom Data 2023; 24:69. [PMID: 37986039 PMCID: PMC10662504 DOI: 10.1186/s12863-023-01172-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 11/10/2023] [Indexed: 11/22/2023] Open
Abstract
OBJECTIVES Molecular cues linked to heartwood formation open new (complementary) perspectives to genetic breeding programs of Douglas-fir, a tree species largely cultivated in Europe for the natural durability and civil engineering properties of its wood. DATA DESCRIPTION RNAs from a single genotype of Douglas-fir, extracted from three distinct wood zones (outer sapwood, inner sapwood and transition zone) at four vegetative seasons to generate an extensive RNA-seq dataset used to apprehend the in-wood dynamic and seasonality of heartwood formation in this hardwood model species. Previously published data collected on somatic embryos of the same genotype could be merged with the present dataset to upgrade grade the Douglas-fir reference transcriptome.
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Affiliation(s)
- Didier Delourme
- Université de Limoges, LABCIS, UR 22722, 123 avenue Albert Thomas, Limoges, F-87060, France
| | - Laure Brémaud
- Université de Limoges, LABCIS, UR 22722, 123 avenue Albert Thomas, Limoges, F-87060, France
| | - Idelette Plazanet
- Université de Limoges, LABCIS, UR 22722, 123 avenue Albert Thomas, Limoges, F-87060, France
| | - Patrick Pélissier
- Université de Limoges, LABCIS, UR 22722, 123 avenue Albert Thomas, Limoges, F-87060, France
| | | | | | | | - Stéphanie Durand
- Université de Limoges, CAPTuR, UMR INSERM/CHU 1308, 2 Rue du Docteur Marcland, Limoges, F-87025, France
| | - Guy Costa
- Université de Limoges, LABCIS, UR 22722, 123 avenue Albert Thomas, Limoges, F-87060, France.
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