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Dussert E, Tourret M, Deracinois B, Duban M, Leclère V, Cudennec B, Ravallec R, Behra-Miellet J. Dataset on phenotypic characterization, on protein and genome analysis of three fluorescent Pseudomonas strains from mid-mountain water. Data Brief 2020; 30:105466. [PMID: 32322618 PMCID: PMC7168345 DOI: 10.1016/j.dib.2020.105466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 03/17/2020] [Indexed: 11/13/2022] Open
Abstract
The identification of non-fermentative Gram negative bacilli from run-off and spring water, including fluorescent Pseudomonas is very complex and investigations are needed to contribute to the systematic of these bacteria. In this dataset, the phenotypical profiles of three strains isolated from Vosges mountains first identified as Pseudomonas fluorescens were determined using APIⓇ 50 CH galleries. Then, the identification of their proteins released directly into water was carried out using tandem/mass spectrometry after separating proteins on native two-dimensional polyacrylamide gels. Finally, genotypic analysis data is presented, that illustrates biodiversity in this fluorescent bacterial group. This data is referred by a research article entitled “Fluorescent Pseudomonas strains from mid-mountain water able to release antioxidant proteins directly into water”.
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Key Words
- ANI, average nucleotide identity
- Bacterial identification
- Fluorescent Pseudomonas
- Genome sequencing
- MALDI, matrix assisted laser desorption ionization
- MS, mass spectrometry
- MS/MS, tandem mass spectrometry
- MW, molecular weight
- NCBI, National Center for Biotechnology Information
- NR, not reviewed
- Nb, number of experimental peptides recognized
- P., Pseudomonas
- PFF, peptide fragment fingerprinting
- PMF, peptide mass fingerprinting
- Proteomics
- R, reviewed
- Spot no., spot number
- TCS, tetra correlation search
- TOF/TOF, time-of-flight/time-of-flight
- ppm, parts per million
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Affiliation(s)
- Elodie Dussert
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Mélissa Tourret
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Barbara Deracinois
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Matthieu Duban
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Valérie Leclère
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Benoit Cudennec
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Rozenn Ravallec
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Josette Behra-Miellet
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, F-59000 Lille, France
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