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Scicutella F, Cucu MA, Mannelli F, Pastorelli R, Daghio M, Paoli P, Pazzagli L, Turini L, Mantino A, Luti S, Genovese M, Viti C, Buccioni A. Rumen microbial community and milk quality in Holstein lactating cows fed olive oil pomace as part in a sustainable feeding strategy. Animal 2023; 17:100815. [PMID: 37167820 DOI: 10.1016/j.animal.2023.100815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 04/01/2023] [Accepted: 04/06/2023] [Indexed: 05/13/2023] Open
Abstract
The use of alternative feed ingredients from the Agro-industry could be an efficient tool to improve the sustainability of dairy cow production. Since the richness in polyphenols, olive oil pomace (OOP), produced during olive oil milling, seems a promising by-product to ameliorate milk's nutritional value. The aim of this study was to test the use of OOP produced by means of a new technology (biphasic with stone deprivation) in dairy cow feeding strategy to evaluate the effect on animal performances, rumen microbiota, biohydrogenation processes and milk quality by a multidisciplinary approach. Forty multiparous Italian-Friesian dairy cows, at middle lactation, were randomly allotted into two homogenous groups and fed respectively a commercial diet (CON) and the experimental diet (OOPD) obtained by adding OOP to CON as partial replacement of maize silage. The two diets were formulated to be isoproteic and isoenergetic. The same diets were tested also in an in vitro trial aimed to evaluate their rumen degradability (% DEG). The dietary supplementation with OOP did not affect DM intake, rumen % DEG and milk production. The milk's nutritional quality was improved by increasing several important functional fatty acids (FAs; i.e., linoleic acid, conjugated linoleic acid, oleic acid, vaccenic acid). This finding was related to a decrease in rumen liquor biohydrogenation rate of unsaturated FAs. The stochiometric relation between volatile FA production in the rumen and methanogenesis suggested that OOP lowers the methane potential production (CON = 0.050 mol/L vs OOPD = 0.024 mol/L, SEM = 0.005, P = 0.0011). Rumen microbiota and fungi community did not be strongly altered by OOP dietary inclusion because few bacteria were affected at the genus level only. Particularly, Acetobacter, Prevotellaceae_UCG-004, Prevotellaceae_UCG-001, Eubacterium coprostanoligenes, Lachnospira, Acetitomaulatum, Lachnospiraceae_NK3A20 group were more abundant with OOPD condition (P < 0.05). Data reported in this study confirm that the use of OOP in dairy cow feeding can be an interesting strategy to improve milk nutritional quality increasing functional FA content without compromising the rumen degradability of the diet or causing strong perturbation of rumen ecosystem and maintaining animal performances.
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Affiliation(s)
- F Scicutella
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali. University of Florence, Piazzale delle Cascine 18, 50144 Firenze, Italy
| | - M A Cucu
- Centro di ricerca Agricoltura e Ambiente, Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-AA), via di Lanciola 12/A, 50125 Firenze, Italy
| | - F Mannelli
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali. University of Florence, Piazzale delle Cascine 18, 50144 Firenze, Italy
| | - R Pastorelli
- Centro di ricerca Agricoltura e Ambiente, Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-AA), via di Lanciola 12/A, 50125 Firenze, Italy
| | - M Daghio
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali. University of Florence, Piazzale delle Cascine 18, 50144 Firenze, Italy
| | - P Paoli
- Dipartimento di Scienze Biomediche, Sperimentali e Cliniche Mario Serio, Università degli studi di Firenze, 50100 Florence, Italy
| | - L Pazzagli
- Dipartimento di Scienze Biomediche, Sperimentali e Cliniche Mario Serio, Università degli studi di Firenze, 50100 Florence, Italy
| | - L Turini
- Dipartimento di Scienze Agrarie, Alimentari e Agro-ambientali, Università di Pisa, via del borghetto, 80, 56124 Pisa, Italy; Centro di Ricerche Agro-ambientali "E. Avanzi", Università di Pisa, via Vecchia di Marina, 6, 56122, Pisa, Italy
| | - A Mantino
- Dipartimento di Scienze Agrarie, Alimentari e Agro-ambientali, Università di Pisa, via del borghetto, 80, 56124 Pisa, Italy; Centro di Ricerche Agro-ambientali "E. Avanzi", Università di Pisa, via Vecchia di Marina, 6, 56122, Pisa, Italy
| | - S Luti
- Dipartimento di Scienze Biomediche, Sperimentali e Cliniche Mario Serio, Università degli studi di Firenze, 50100 Florence, Italy
| | - M Genovese
- Dipartimento di Scienze Biomediche, Sperimentali e Cliniche Mario Serio, Università degli studi di Firenze, 50100 Florence, Italy
| | - C Viti
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali. University of Florence, Piazzale delle Cascine 18, 50144 Firenze, Italy
| | - A Buccioni
- Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali. University of Florence, Piazzale delle Cascine 18, 50144 Firenze, Italy; Centro Interdipartimentale di Ricerca e la Valorizzazione degli Alimenti, University of Florence, viale Pieraccini 6, 50139 Firenze, Italy.
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M B, P C. Comparative analysis of differential proteome-wide protein-protein interaction network of Methanobrevibacter ruminantium M1. Biochem Biophys Rep 2019; 20:100698. [PMID: 31763465 PMCID: PMC6859225 DOI: 10.1016/j.bbrep.2019.100698] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 10/12/2019] [Accepted: 10/14/2019] [Indexed: 11/22/2022] Open
Abstract
A proteome-wide protein-protein interaction (PPI) network of Methanobrevibacter ruminantium M1 (MRU), a predominant rumen methanogen, was constructed from its metabolic genes using a gene neighborhood algorithm and then compared with closely related rumen methanogens Using proteome-wide PPI approach, we constructed network encompassed 2194 edges and 637 nodes interacting with 634 genes. Network quality and robustness of functional modules were assessed with gene ontology terms. A structure-function-metabolism mapping for each protein has been carried out with efforts to extract experimental PPI concomitant information from the literature. The results of our study revealed that some topological properties of its network were robust for sharing homologous protein interactions across heterotrophic and hydrogenotrophic methanogens. MRU proteome has shown to establish many PPI sub-networks for associated metabolic subsystems required to survive in the rumen environment. MRU genome found to share interacting proteins from its PPI network involved in specific metabolic subsystems distinct to heterotrophic and hydrogenotrophic methanogens. Across these proteomes, the interacting proteins from differential PPI networks were shared in common for the biosynthesis of amino acids, nucleosides, and nucleotides and energy metabolism in which more fractions of protein pairs shared with Methanosarcina acetivorans. Our comparative study expedites our knowledge to understand a complex proteome network associated with typical metabolic subsystems of MRU and to improve its genome-scale reconstruction in the future.
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Affiliation(s)
| | - Chellapandi P
- Molecular Systems Engineering Lab, Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli, 620 024, Tamil Nadu, India
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Latham EA, Pinchak WE, Trachsel J, Allen HK, Callaway TR, Nisbet DJ, Anderson RC. Paenibacillus 79R4, a potential rumen probiotic to enhance nitrite detoxification and methane mitigation in nitrate-treated ruminants. Sci Total Environ 2019; 671:324-328. [PMID: 30933788 DOI: 10.1016/j.scitotenv.2019.03.390] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 03/23/2019] [Accepted: 03/24/2019] [Indexed: 06/09/2023]
Abstract
The effects of supplemental nitrate administered alone or with a denitrifying ruminal bacterium, designated Paenibacillus 79R4 (79R4) intentionally selected for enhanced nitrate- and nitrite-metabolizing ability, on select rumen fermentation characteristics was examined in vivo. Rumen and blood samples were collected from cannulated Holstein steers one day prior to and one day after initiation of treatments applied as three consecutive intra-ruminal administrations of nitrate, to achieve the equivalent of 83 mg sodium nitrate/kg body weight day, given alone or with the nitrite-selected 79R4 (provided to achieve 106 cells/mL rumen fluid). Results revealed a day effect on methane-producing activity, with rates of methane production by ruminal microbes being more rapid when collected one day before than one day after initiation of treatments. Nitrate-metabolizing activity of the rumen microbes was unaffected by day, treatment or their interaction. A day by treatment interaction was observed on nitrite-metabolizing activity, with rates of nitrite metabolism by rumen microbes being most rapid in populations collected one day after initiation of treatment from steers treated with nitrate plus 79R4. A day by treatment interaction was also observed on plasma methemoglobin concentrations, with concentrations being lower from steers one day after initiation of treatments than from collected one day prior to treatment initiation and concentrations being lowest in steers treated with nitrate plus 79R4. A major effect of treatment was observed on accumulations of most prominent and branched chain volatile fatty acids produced and amounts of hexose fermented in the rumen of animals administered nitrate, with concentrations being decreased in steers administered nitrate alone when compared to steers treated with nitrate plus the 79R4. These results demonstrate that the nitrite-selected Paenibacillus 79R4 may help prevent nitrite toxicity in nitrate-treated ruminants while maintaining benefits of reduced methane emissions and preventing inhibition of fermentation efficiency by the microbial ecosystem.
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Affiliation(s)
- Elizabeth A Latham
- Department of Animal Science, Texas A&M University, College Station, TX 77843, USA; Texas A&M AgriLife Research, Vernon, TX 76385, USA.
| | | | - Julian Trachsel
- United States Department of Agriculture, Agricultural Research Service, National Animal Disease Center, Food Safety and Enteric Pathogens Research Unit, 1920 Dayton Ave, Ames, IA 50010, USA
| | - Heather K Allen
- United States Department of Agriculture, Agricultural Research Service, National Animal Disease Center, Food Safety and Enteric Pathogens Research Unit, 1920 Dayton Ave, Ames, IA 50010, USA
| | - Todd R Callaway
- United States Department of Agriculture, Agricultural Research Service, Southern Plains Agricultural Research Center, Food and Feed Safety Research Unit, College Station, TX 77845, USA
| | - David J Nisbet
- United States Department of Agriculture, Agricultural Research Service, Southern Plains Agricultural Research Center, Food and Feed Safety Research Unit, College Station, TX 77845, USA
| | - Robin C Anderson
- United States Department of Agriculture, Agricultural Research Service, Southern Plains Agricultural Research Center, Food and Feed Safety Research Unit, College Station, TX 77845, USA
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Chellapandi P, Bharathi M, Sangavai C, Prathiviraj R. Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review. Vet Anim Sci 2018; 6:86-94. [PMID: 32734058 PMCID: PMC7386643 DOI: 10.1016/j.vas.2018.09.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Revised: 08/29/2018] [Accepted: 09/12/2018] [Indexed: 12/18/2022] Open
Abstract
Methanobacterium formicicum (Methanobacteriaceae family) is an endosymbiotic methanogenic Archaean found in the digestive tracts of ruminants and elsewhere. It has been significantly implicated in global CH4 emission during enteric fermentation processes. In this review, we discuss current genomic and metabolic aspects of this microorganism for the purpose of the discovery of novel veterinary therapeutics. This microorganism encompasses a typical H2 scavenging system, which facilitates a metabolic symbiosis across the H2 producing cellulolytic bacteria and fumarate reducing bacteria. To date, five genome-scale metabolic models (iAF692, iMG746, iMB745, iVS941 and iMM518) have been developed. These metabolic reconstructions revealed the cellular and metabolic behaviors of methanogenic archaea. The characteristics of its symbiotic behavior and metabolic crosstalk with competitive rumen anaerobes support understanding of the physiological function and metabolic fate of shared metabolites in the rumen ecosystem. Thus, systems biological characterization of this microorganism may provide a new insight to realize its metabolic significance for the development of a healthy microbiota in ruminants. An in-depth knowledge of this microorganism may allow us to ensure a long term sustainability of ruminant-based agriculture.
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Affiliation(s)
- P Chellapandi
- Molecular Systems Engineering Lab, Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu 620 024, India
| | - M Bharathi
- Molecular Systems Engineering Lab, Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu 620 024, India
| | - C Sangavai
- Molecular Systems Engineering Lab, Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu 620 024, India
| | - R Prathiviraj
- Molecular Systems Engineering Lab, Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu 620 024, India
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Cobellis G, Trabalza-Marinucci M, Yu Z. Critical evaluation of essential oils as rumen modifiers in ruminant nutrition: A review. Sci Total Environ 2016; 545-546:556-68. [PMID: 26760275 DOI: 10.1016/j.scitotenv.2015.12.103] [Citation(s) in RCA: 120] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Revised: 12/21/2015] [Accepted: 12/21/2015] [Indexed: 05/22/2023]
Abstract
Ruminant livestock systems contribute significantly to emission of methane, a potent greenhouse gas as they waste a portion of the ingested energy (2-15%) as methane and a large proportion (75-95%) of the ingested nitrogen as ammonia. Recently, numerous researches have been conducted to evaluate plant secondary metabolites, including essential oils (EO), as natural feed additives in ruminant nutrition and to exploit their potential to improve rumen fermentation efficiency. Essential oils appeared to be very promising compounds as they selectively reduced methane production and protein breakdown in both in vitro and in vivo studies. However, in some studies, the use of EO as feed additives was accompanied with decreased feed degradability and lowered volatile fatty acid. These adverse effects could be attributed to their broad and often non-specific antimicrobial activities within the rumen. Future research should be directed to identification of the active and useful EO compounds, optimization of EO doses, and use of a whole-farm approach with a focus on animal welfare, performance and economic benefits.
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Affiliation(s)
- Gabriella Cobellis
- Dipartimento di Medicina Veterinaria, Università degli Studi di Perugia, Perugia, Italy; Department of Animal Sciences, The Ohio State University, Columbus, OH 43210, USA.
| | | | - Zhongtang Yu
- Department of Animal Sciences, The Ohio State University, Columbus, OH 43210, USA
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Singh B, Bhat TK, Kurade NP, Sharma OP. Metagenomics in animal gastrointestinal ecosystem: a microbiological and biotechnological perspective. Indian J Microbiol 2008; 48:216-27. [PMID: 23100715 DOI: 10.1007/s12088-008-0027-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2007] [Accepted: 12/15/2007] [Indexed: 01/04/2023] Open
Abstract
Metagenomics- the application of the genomics technologies to nonculturable microbial communities, is coming of age. These approaches can be used for the screening and selection of nonculturable rumen microbiota for assessing their role in gastrointestinal (GI) nutrition, plant material fermentation and the health of the host. The technologies designed to access this wealth of genetic information through environmental nucleic acid extraction have provided a means of overcoming the limitations of culture-dependent microbial genetic exploitation. The molecular procedures and techniques will result in reliable insights into the GI microbial structure and activity of the livestock gut microbes in relation to functional interactions, temporal and spatial relationships among different microbial consortia and dietary ingredients. Future developments and applications of these methods promise to provide the first opportunity to link distribution and identity of rumen microbes in their natural habitats with their genetic potential and in situ activities.
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Affiliation(s)
- B Singh
- Animal Biotechnology Lab. Regional Station, Indian Veterinary Research Institute, Palampur, 176 061 India
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